NO16G02840, NO16G02840 (gene) Nannochloropsis oceanica

Overview
NameNO16G02840
Unique NameNO16G02840
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2814
Alignment locationchr16:817492..820305 -

Link to JBrowse

Properties
Property NameValue
DescriptionNse4, component of Smc5/6 DNA repair complex
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:817492..820305 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006281DNA repair
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0030915Smc5-Smc6 complex
Vocabulary: INTERPRO
TermDefinition
IPR027786Nse4/EID
IPR014854Nse4_C
Homology
BLAST of NO16G02840 vs. NCBI_GenBank
Match: XP_022091752.1 (non-structural maintenance of chromosomes element 4 homolog A-like [Acanthaster planci])

HSP 1 Score: 124.0 bits (310), Expect = 1.100e-24
Identity = 94/307 (30.62%), Postives = 151/307 (49.19%), Query Frame = 0
Query:   85 NPEERFKARQVLRAEGSALLEDAKDLADPTKKALNEGITRNDKLGEMVAH---PREAILDAENVNKLANAAKKQAESLSSTVRRYDWQAVLDGL-------RENPELRDGRGI-----NWIKLGASVAACFKNVPEIDFMLGPLEK---PVPVRKERMKRVRHADEKGPEVQPEEVTQQTEKETEDIGAVRVKAMMDVMGKTFQTNRTERSQQTTE-VDIFNFLFDPLSFTQTVENIFDVSFLVKEDKTAIQLDANGIPVVRPVSAAAASQNVRK--KTQAVLSLSMGEWKELCDVFAVSSPSVPHR 371
            N E+R + RQ  R   +    + +DL  P    L   + R D L   V      REA LDA+ +  +++   +QA+ L S    +D     + L       R   E  + R +      W KLG +  +CF+  P   FMLG  E+   PV  RK+   R +  D  GP V P++V Q   K  +++    V+ M+ ++ +   TN  +  Q   E V +F F+ +P SF++TVENIF +SFLVK+    ++LD + +P++ P +     Q   +  + Q ++SL M +WKE+ +VF +  P +P R
Sbjct:   13 NHEKRRQLRQDYRNLIAETQRNRQDLIQPESDGLKNTLDRADTLFTQVTKSKCSREAALDAQLMVLVSSLGHEQAQKLHSDFHTFDPSEFAEKLITFMGDRRIRNEEGERRNVPFPKEGWSKLGRAAKSCFRRAPAFHFMLGSFERGEAPVKTRKQSAARQKEKD-SGPAVVPKQV-QSMGKSHQEVTTEEVERMLGILHQV--TNFDQEDQSEVEPVSLFEFVINPHSFSETVENIFHLSFLVKDGHAEVRLDDDRLPIIIPTTPYVEGQTNEQVDRKQVMISLDMQQWKEIVNVFEIKEPLIPRR 315          
BLAST of NO16G02840 vs. NCBI_GenBank
Match: CCI47806.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 120.2 bits (300), Expect = 1.600e-23
Identity = 94/285 (32.98%), Postives = 146/285 (51.23%), Query Frame = 0
Query:   93 RQVLRAEGSALLED----AKDLADPTKKALNEGITRNDKLGEMVAHPREAILDAENVNKLANAAKKQAESL-SSTVRRYDWQAVLDGLRENPELRDGRGINWIKLGASVAACFKNVPEIDFMLGPLEKPVPVRKERMKRVRHADEKGPEVQPEEVTQQTEK-ETEDIGAVRVKAMMDVMGKTFQTNRTERSQQTTEVDIFNFLFDPLSFTQTVENIFDVSFLVKEDKTAIQLDANGIPVVRPVSAAAASQNVRKKTQAVLSLSMGEWKELCDVFAVSSPSVPHRE 372
            R+ +R +   +L+D    AK+LA  T     E     +++ E + +PREA LDA N+ +L  A  KQ++SL S+  ++YD   ++   R N    DG   NW KLG  VA+CF  VPEI+F  G ++  V  ++    R R  DE    +Q    TQ + K + +D  A R++ M   +         ERS +    ++F     P SFTQT+EN+FDVSFLV+     I +D N  P +     +   +++  +TQ ++SL+  +W+EL       +P V  RE
Sbjct:   21 RRKIRCKERDILQDIRKNAKELATVTSTKFIETTEELNQVYEQICYPREANLDASNLEELNQAVVKQSQSLGSNNCQQYDATDLIRASRSN-FASDGT-FNWEKLGRKVASCFHCVPEINFFFGLMDTKVTEKQRHRSRRRRNDE---SIQTSHPTQYSAKSDRQDAQARRLETMRLAL---------ERSNRQ---NLFRVALHPQSFTQTIENLFDVSFLVRNGALEIGMDDNEAPYLEH-HESRPDESMPAQTQTIISLTPDQWEELAGAMDAEAPLVGTRE 287          
BLAST of NO16G02840 vs. NCBI_GenBank
Match: XP_009062782.1 (hypothetical protein LOTGIDRAFT_235347 [Lottia gigantea] >ESO86547.1 hypothetical protein LOTGIDRAFT_235347 [Lottia gigantea])

HSP 1 Score: 117.9 bits (294), Expect = 7.700e-23
Identity = 96/322 (29.81%), Postives = 160/322 (49.69%), Query Frame = 0
Query:   59 AAACEKRTKSQKRQEQENFQKFIASKNPEERFKARQVLRAEGSALLEDAKDLADPTKKALNEGITRNDKLGEMVAHPREAILDAENVNKLANAAKKQAESLSSTVRRYDWQAVLDGLRE---NPELRDG--RGINWIKLGASVAACFKNVPEIDFMLGPLEK-PVPVRKERMKRVRHADEKGPEVQ-PEEVTQQTEKETEDIGAVRVKAMMDVMGKTFQTNRTERSQQTTEVDIFNFLFDPLSFTQTVENIFDVSFLVKEDKTAIQLDANGIPVVRPV--SAAAASQNVRKKTQAVLSLSMGEWKELCDVFAVSSPSVPHRE 372
            A  C+         E+ N +     ++ +ER + RQ  R     L  D  DL +P    LNE + + D+  + V   REA LD++ +  +AN  +++A++L++   ++     ++ L+       L  G      W  LGA+V   FK  P   FM G  EK  V VRKER+K+VR  D    +   P +V +  + +  +     V+ +  ++ K ++  +         +  F F+ +P SF QT+ENIF VSFLV++    I LD + +PV+ P+  S    ++NV+ K Q ++SLS  EWKE+   F ++   +PHR+
Sbjct:   14 ATDCDDEDIDLANTEENNLKYLKPIQDADERREIRQNYRKLIEDLERDKHDLINPESDELNERLKQADEYYKPVKMTREAALDSQALVMIANMGRQKAQALNTEFVKFQPVEFVEKLKTFVCGNVLETGTISTEKWSTLGAAVQPFFKRSPPFRFMNGAFEKGEVDVRKERVKKVREKDSGVDKATVPIQVQRVQDTDKMEATTAEVERIYKILEKCYEKTK------NNPLCYFEFVTNPHSFGQTIENIFYVSFLVRDGVLKISLDEDKLPVLEPIKESDKKTNKNVKNK-QVIISLSPAEWKEVVKTFNITESVIPHRK 328          
BLAST of NO16G02840 vs. NCBI_GenBank
Match: XP_024580074.1 (non-structural maintenance of chromosomes element 4 homolog a [Plasmopara halstedii] >CEG43705.1 non-structural maintenance of chromosomes element 4 homolog a [Plasmopara halstedii])

HSP 1 Score: 117.5 bits (293), Expect = 1.000e-22
Identity = 86/285 (30.18%), Postives = 151/285 (52.98%), Query Frame = 0
Query:   89 RFKARQVLRAEGSALLEDAKDLADPTKKALNEGITRNDKLGEMVAHPREAILDAENVNKLANAAKKQAESL-SSTVRRYDWQAVLDGLRENPELRDGRG-INWIKLGASVAACFKNVPEIDFMLGPLEKPVPVRKERMKRVRHADEKGPEVQPEEVTQQTEKETEDIGAVRVKAMMDVMGKTFQTNRTERSQQTTEVDIFNFLFDPLSFTQTVENIFDVSFLVKEDKTAIQLDA-NGIPVVRPVSAAAASQNVRKKTQAVLSLSMGEWKELCDVFAVSSPSVPHR 371
            R+K R++L+    ++ E+A DLA  +    +      D++ + V +PREA LDA N+++L  A  KQ+E+L SS + +YD   ++   +    +    G  +W  LG +  ACF++VPE  F+ G ++  V  ++ +  R    D    E QP E T   +K+ +D  A R++ +        QT  TE  +    +D+   + +P SFTQTVEN+FD SFLV+ +   I +D  +G+P ++         N+   +Q+++S++  +W++L  V   + P + HR
Sbjct:   46 RYKERELLQ----SIKENAHDLAKLSSDQFHTHTQELDQMYDSVCYPREANLDASNLDELNVAVAKQSEALGSSDLTKYDTTDLIRAAQNVCTIESQNGEFDWNTLGNAAGACFRSVPESCFLFGLMDTEVTHKERKKARRVEEDVNAQETQPTEYT--NKKDRKDAQARRLEIL--------QTKLTEGERVKPLLDL---VINPKSFTQTVENLFDTSFLVRNNSAEIGIDGDSGLPYLKN-QEGLGEVNLPASSQSIISITPAQWEQLVRVMGRNEPLLGHR 312          
BLAST of NO16G02840 vs. NCBI_GenBank
Match: CCI47805.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 116.7 bits (291), Expect = 1.700e-22
Identity = 91/279 (32.62%), Postives = 143/279 (51.25%), Query Frame = 0
Query:   93 RQVLRAEGSALLED----AKDLADPTKKALNEGITRNDKLGEMVAHPREAILDAENVNKLANAAKKQAESL-SSTVRRYDWQAVLDGLRENPELRDGRGINWIKLGASVAACFKNVPEIDFMLGPLEKPVPVRKERMKRVRHADEKGPEVQPEEVTQQTEK-ETEDIGAVRVKAMMDVMGKTFQTNRTERSQQTTEVDIFNFLFDPLSFTQTVENIFDVSFLVKEDKTAIQLDANGIPVVRPVSAAAASQNVRKKTQAVLSLSMGEWKELCDVFAVSSP 366
            R+ +R +   +L+D    AK+LA  T     E     +++ E + +PREA LDA N+ +L  A  KQ++SL S+  ++YD   ++   R N    DG   NW KLG  VA+CF  VPEI+F  G ++  V  ++    R R  DE    +Q    TQ + K + +D  A R++ M   +         ERS +    ++F     P SFTQT+EN+FDVSFLV+     I +D N  P +     +   +++  +TQ ++SL+  +W+EL       +P
Sbjct:   21 RRKIRCKERDILQDIRKNAKELATVTSTKFIETTEELNQVYEQICYPREANLDASNLEELNQAVVKQSQSLGSNNCQQYDATDLIRASRSN-FASDGT-FNWEKLGRKVASCFHCVPEINFFFGLMDTKVTEKQRHRSRRRRNDE---SIQTSHPTQYSAKSDRQDAQARRLETMRLAL---------ERSNRQ---NLFRVALHPQSFTQTIENLFDVSFLVRNGALEIGMDDNEAPYLEH-HESRPDESMPAQTQTIISLTPDQWEELAGAMDAEAP 281          
BLAST of NO16G02840 vs. NCBI_GenBank
Match: XP_009863355.1 (PREDICTED: non-structural maintenance of chromosomes element 4 homolog A-like, partial [Apaloderma vittatum])

HSP 1 Score: 116.7 bits (291), Expect = 1.700e-22
Identity = 94/301 (31.23%), Postives = 140/301 (46.51%), Query Frame = 0
Query:  105 EDAKDLADPTKKALNEGITRNDKLGEMVAHPREAILDAENVNKLANAAKKQAESLSSTVRRYDWQAVLDGL---------RENPELRDGRGIN--------WIKLGASVAACFKNVPEIDFMLGPLEKPVPV---RKERMKRVRHADEKGP-----EVQPEEVTQQTEKETEDIGAVRVKAMMDVMGKTFQTNRTERSQQTTEVDIFNFLFDPLSFTQTVENIFDVSFLVKEDKTAIQLDANGIPVVRPVSAAAASQNVR---KKTQAVLSLSMGEWKELCDVFAVSSP--SVPHRENSDL 376
            ++ +D+  P    L E +   +KL   V+  REA LDA+ +   +N  K++A  L S +  +D  A  D L             +  D  G++        W KLG      F+  P   +MLG  +   PV   R ER K+ R  +EK       +   E   + TEKE E     R+ A++    +T  TN  E     T +  F F+ DP SF +TVENIF VSFL+++    ++LD N +PV+ P       ++ R    + Q VLSLS  EWKE+ D + ++ P  S PH    D+
Sbjct:   39 QNREDMLSPKSNRLTEALEEANKLFSGVSCAREAALDAQFLVLASNLGKEKANELRSEMTTFDSLAFADDLLTFMGINRIEIEDKDSDSEGVSSGYLPSNAWHKLGEEAEKYFRRAPTFHYMLGSFKSDPPVTRQRIERQKKARGGEEKRAMPAQLKKMEESPQEATEKEVE-----RILALL----QTHSTNDPE-----TPISFFEFVIDPNSFARTVENIFHVSFLIRDGFARLKLDENELPVIEPSKDDERRKDDRGAGARNQLVLSLSHQEWKEMIDAYGITEPMISPPHGNEEDM 325          
BLAST of NO16G02840 vs. NCBI_GenBank
Match: CCA18531.1 (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 115.9 bits (289), Expect = 2.900e-22
Identity = 84/277 (30.32%), Postives = 144/277 (51.99%), Query Frame = 0
Query:   93 RQVLRAEGSALLED----AKDLADPTKKALNEGITRNDKLGEMVAHPREAILDAENVNKLANAAKKQAESLSSTVRRYDWQAVLDGLRENPELRDGRGINWIKLGASVAACFKNVPEIDFMLGPLEKPVPVRKERMKRVRHADEKGPEVQPEEVTQQTEKETEDIGAVRVKAMMDVMGKTFQTNRTERSQQTTEVDIFNFLFDPLSFTQTVENIFDVSFLVKEDKTAIQLDANGIPVVRPVSAAAASQNVRKKTQAVLSLSMGEWKELCDVFAVSSP 366
            R+ +R +   +L+D    AK+LA+ T     E     +++ E +  PREA LDA N+ +L  A  KQA+SL +  ++YD   ++   RE+         +W KLG +VA+ F+ VPEI+F  G ++  V  ++ +  R    DE     QP + + + ++  +D  A R++ M   M       R++R       D+F     P SF+QTVEN+FDVSFLV+     I +D    P +     +   +++  +TQ+++S++  +W+EL +V  +  P
Sbjct:   21 RRKIRCKERDILQDIRKNAKELANVTSNKFIETTEELNQVYEQICFPREANLDASNLEELNQAIIKQAQSLGTIRQQYDAADLIRASRES--FASDEAFDWEKLGGTVASSFRCVPEINFFFGLMDTKVTEKQRQPTRRIRNDESIQTSQPTKYSAKNDQ--QDAQARRLETMRLAM------KRSDRQ------DLFRVALHPQSFSQTVENLFDVSFLVRNGALEIGIDDKETPYIEH-HPSRTDESMPPQTQSIISITPNQWEELANVMELEEP 280          
BLAST of NO16G02840 vs. NCBI_GenBank
Match: XP_012198508.1 (hypothetical protein SPRG_04712 [Saprolegnia parasitica CBS 223.65] >KDO30811.1 hypothetical protein SPRG_04712 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 115.5 bits (288), Expect = 3.800e-22
Identity = 87/297 (29.29%), Postives = 154/297 (51.85%), Query Frame = 0
Query:   79 KFIASKNPEERFKARQVLRAEGSALLEDAKDLADPTKKALNEGITRNDKLGEMVAHPREAILDAENVNKLANAAKKQAESL-SSTVRRYDWQAVLDGLRENPELRD-GRGINWIKLGASVAACFKNVPEIDFMLGPLEKPVPVRKER--MKRVRHADEKGPEVQPEEVTQQTEKETEDIGAVRVKAMMDVMGKTFQTNRTERSQQTTEVDIFNFLFDPLSFTQTVENIFDVSFLVKEDKTAIQ-LDANGIPVVRPVSAAAASQNVRKKTQAVLSLSMGEWKELCDVFAVSSPSVPHR 371
            K   ++  E R K R++L    + L E+ +D+      A        D + E V +PREA LDA N+++ +N   KQA  + SS + ++D   ++  ++E     + G G++W +LG++V ACF +   I FM G ++  V V+KE+  ++R R  D    E QP +++ +   + ED+ AVR++ ++  +            +   +VD+F+   +P SF QTVEN FD+SFL++     IQ  +A+  P ++        + +   TQ V+++S  +W+ L  ++    P V HR
Sbjct:   20 KITEAERREIRCKEREIL----TDLRENNRDVVQIASNAFKTKTHELDSVYERVFYPREANLDACNLDEFSNVVVKQAGLMGSSDLTKFDVADLMSAIKEKCIADERGNGLDWDRLGSAVGACFSSTIGISFMYGSMDTQV-VQKEKKTVRRRRQDDLDEVETQPTQISGENRPDKEDVQAVRLQKLVKTL-----------KRSAKKVDVFDLCVNPESFAQTVENFFDMSFLIRNGHAKIQRANASAAPTIQN-HDGINDEELPPSTQCVITISYKQWEALSKIY--RDPLVGHR 297          
BLAST of NO16G02840 vs. NCBI_GenBank
Match: XP_006001805.2 (PREDICTED: non-structural maintenance of chromosomes element 4 homolog A-like [Latimeria chalumnae] >XP_006001806.2 PREDICTED: non-structural maintenance of chromosomes element 4 homolog A-like [Latimeria chalumnae] >XP_014347348.1 PREDICTED: non-structural maintenance of chromosomes element 4 homolog A-like [Latimeria chalumnae] >XP_014347349.1 PREDICTED: non-structural maintenance of chromosomes element 4 homolog A-like [Latimeria chalumnae])

HSP 1 Score: 115.2 bits (287), Expect = 5.000e-22
Identity = 91/309 (29.45%), Postives = 151/309 (48.87%), Query Frame = 0
Query:   85 NPEERFKARQVLRAEGSALLEDAKDLADPTKKALNEGITRNDKLGEMVAHPREAILDAENVNKLANAAKKQAESLSSTVRRYDWQAV------------LDGLRENPELRDGRG-----INWIKLGASVAACFKNVPEIDFMLGPLEKPVPVRKERMKRVR-HADEKGPEVQPE-----EVTQQ--TEKETEDIGAVRVKAMMDVMGKTFQTNRTERSQQ-TTEVDIFNFLFDPLSFTQTVENIFDVSFLVKEDKTAIQLDANGIPVVRPVSAAAASQNVRKKTQAVLSLSMGEWKELCDVFAVSSPSV 368
            +P+ R   R   R   +++ ++  D+ +PT   L E +   +KL   V   REA LDA+ +   +N  K++A  L S +  +D  A             LDG   + E  +  G       W KLG      FK  P   +MLG  +   P  ++R++R R  A  +   + P      E +QQ  TEKE E     R+ A++          ++  SQ  +T + +F+F+ DP SF +TVENIF VSF+V++   AI+LD + +P++ P+S  A     + + QAV+SLS  +W+++ + F ++   +
Sbjct:   38 DPDTRRIIRHQYRELINSVQQNRMDMLNPTSNKLTEALEEANKLFNNVNQAREAALDAQFLVLASNLGKEKANQLHSDMTVFDPAAFVEDLLTFMGLNRLDGYESDSEDDNSVGGFLPNDAWYKLGKEADKYFKRAPVFHYMLGSFKADPPAPRQRIERQRKDASTEEQRMMPAQLKKMEASQQEATEKEVE-----RILALL----------QSYHSQDPSTPIPLFDFVIDPKSFARTVENIFHVSFIVRDGFAAIKLDKDKLPIIEPISGDAGKDTTQVRNQAVISLSKQDWRDIIETFEITEAMI 331          
BLAST of NO16G02840 vs. NCBI_GenBank
Match: XP_020389443.1 (non-structural maintenance of chromosomes element 4 homolog A [Rhincodon typus] >XP_020389444.1 non-structural maintenance of chromosomes element 4 homolog A [Rhincodon typus])

HSP 1 Score: 114.4 bits (285), Expect = 8.500e-22
Identity = 84/313 (26.84%), Postives = 147/313 (46.96%), Query Frame = 0
Query:   85 NPEERFKARQVLRAEGSALLEDAKDLADPTKKALNEGITRNDKLGEMVAHPREAILDAENVNKLANAAKKQAESLSSTVRRYDWQAVLDGLRENPELRDGRGIN---------------------WIKLGASVAACFKNVPEIDFMLGPLEKPVPVRKERMKRVRHADEKGP-EVQPEEVTQQTEKETEDIGAVRVKAMMDVMGKTFQTNRTERSQQTTEVDIFNFLFDPLSFTQTVENIFDVSFLVKEDKTAIQLDANGIPVVRPVSAAAASQN-VRKKTQAVLSLSMGEWKELCDVFAVSSPSVPHRENSD 375
            +P  R   R   R   +++ ++ +D+  P    L E +   +KL   V   REA LDA+ +    N  +++A  L + +  +D     +      EL    G+N                     W KLG      FK  P   FMLG  +   PV ++R +R + A  K    + P ++ +  E   ++     V+ ++ ++ + F      +S   T ++ F+F+ DP S+ +TVENIF VSF+V++   AI LD + +P++ PV+ A  ++   +++ Q V+SLS  EWKE+ D F ++   +P  +  D
Sbjct:   70 DPNRRRMLRHQYRELINSVQQNREDMIRPNSNKLTEALEEANKLFSNVRQTREAALDAQFLVLATNLGQEKANQLHTDMMVFDPSVFAE------ELLTFMGLNRLETEGSDDDDESAGWLPKDAWTKLGKEAEKYFKRAPAFHFMLGSFKSEPPVPRQRTERQKRAPTKEEHRIMPTQLKKMDESH-QEATEKEVERILGLLQEYF------KSDPETPINFFDFVIDPHSYARTVENIFHVSFIVRDGFAAIGLDQDKLPIIEPVNEAVDNERPQQQRQQTVISLSQQEWKEIIDTFEIADAMIPPSKQGD 369          
The following BLAST results are available for this feature:
BLAST of NO16G02840 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_022091752.11.100e-2430.62non-structural maintenance of chromosomes element ... [more]
CCI47806.11.600e-2332.98unnamed protein product [Albugo candida][more]
XP_009062782.17.700e-2329.81hypothetical protein LOTGIDRAFT_235347 [Lottia gig... [more]
XP_024580074.11.000e-2230.18non-structural maintenance of chromosomes element ... [more]
CCI47805.11.700e-2232.62unnamed protein product [Albugo candida][more]
XP_009863355.11.700e-2231.23PREDICTED: non-structural maintenance of chromosom... [more]
CCA18531.12.900e-2230.32conserved hypothetical protein [Albugo laibachii N... [more]
XP_012198508.13.800e-2229.29hypothetical protein SPRG_04712 [Saprolegnia paras... [more]
XP_006001805.25.000e-2229.45PREDICTED: non-structural maintenance of chromosom... [more]
XP_020389443.18.500e-2226.84non-structural maintenance of chromosomes element ... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR018ncniR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR034ngnoR034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR032ngnoR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO16G02840.1NO16G02840.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|671811gene_6181Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO16G02840.1NO16G02840.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO16G02840 ID=NO16G02840|Name=NO16G02840|organism=Nannochloropsis oceanica|type=gene|length=2814bp
ATGAGGGCGTGGTGTGATGCTATTCGTCACTGCGGGGTCATCGCCGACGG
CGACACGGACACGCCAGACTCGGGGCTAATCGTTCCACCATCCCACTCCC
CCAACCCCACCCTCTACGATAGGAGCCGGTACAAAAAACGACCACAACGA
AGCCGGACAATGCCTGCGGCGCAAGCAGCGGCTTGCGAGAAGCGAACCAA
ATCACAGAAGCGCCAAGAGCAGgtgagctttcgcctcgcctccccccctc
cctccctcccttgttcctccctcctttacgccgtgcgcccaaaattgtct
ctccttacagctctcacgcgtgcagcacacggtaaacttcggttaagaca
gagccgtactccgttttccgtctttggaccgattgctgacctccctcctg
cttccttccctcccttcctttcaccttccctctttccttccctccctctt
tccctcctttcctccctccgatcagGAAAACTTCCAGAAGTTCATCGCCT
CGAAAAATCCCGAAGAAAGATTCAAGGCCCGGCAAGTACTCCGCGCGGAG
GGGAGCGCGCTCTTGGAAGATGCCAAGGACTTGGCAGACCCGACGAAGAA
GGCCTTAAACGAGGGGATAACCCGAAATGATAAATTGGGAGAGATGgtaa
gagagggaggggaagggatggaaggcataaggatgagtagggatggaatt
tctttgattgttacgacggaatgtgctggaaagttgtgtacaaaacgtcg
acgggtcctgaagctcacttcccttctactactcccctcccttcttccct
cccttccttccattcctcccttccttcctcctcctgcagGTGGCCCATCC
CCGCGAGGCTATCTTGGACGCCGAGAACGTGAACAAGCTGGCCAATGCCG
CCAAGAAGCAAGCAGAGTCCTTGTCGTCGACTGTCCGACGgtagggaggg
aggggggacggagggacggagggatcgagtcgaggaagttatgtccatta
ccgtccctatcgcactcattaattttgaattttcaaaccaacagTTATGA
CTGGCAGGCGGTGCTGGATGGCTTACGAGAGAATCCCGAATTGAGGGATG
GGCGGGGAATAAACTGGATTAAACTCGGGgtaggtagcaccctccctccc
tccctccctccctccctctcatcctgtcccttccctccctctctccagGC
CTCGGTCGCTGCTTGTTTTAAGAATGTTCCAGAAATAGACTTCATGCTCG
GGCCACTGGAGAAGCCCGTGCCCGTCAGAAAGGAGCGGATGAAGAGgtga
ggaagggagggagggagggagggagggagggagggagggagggagggatg
gggtgagggtggtggagaaggggggattctacatatcgttcatcaaaggg
agggacggaaggagacgagaggggaaggaaggaaggcgggccgattcatt
cgtaatttaatttaaatcctgtaataattgctggtaatttatattaattg
ccatatattattgcttgctaatatagGGTGAGGCATGCGGATGAGAAGGG
TCCGGAGGTCCAGCCGGAGGAGGTGACACAGCAGACAGAGAAGGAGACGG
AGgtaggtgtgtttggcggggtgttgctgaagtccttcctccctccctcc
ctcccttcttccctctccaaattcgttcttccaggctgcaggcctcgaga
ccgatggagctacataaaggccacttcctccctcccttcctttccatttt
accgtctcactcattgatcctccctccttcccttcctccttcccctccct
cgctccctccctccctccctccctcagGACATAGGCGCCGTGCGGGTCAA
GGCAATGATGGATGTAATGGGAAAGACCTTTCAGACAAACAGGACGGAAC
GAAGCCAGCAGACGACGGAAGTAGATATTTTCAACTTCTTGTTCGATCCT
TTATCGTTTACCCAGgtcaaaagggaggagggagggagggagggagggag
ggagggaggggcagacagtcaatgcatgggaagagtagtcattttattga
ttcggacctcgttcttccctcctcccttcctccttcttccatcctccccc
tcctctagACTGTTGAGAATATATTCGACGTCTCTTTTCTGGTCAAAGAG
GACAAGACCGCCATCCAGTTGGATGCGgtaggtgcatgctcccccccccc
tccctccctccctccctccctccctccctccttccctcgcaccatttctc
cagcgtccttcccatccatccctccctccctcccttcctccctccctcag
AATGGTATACCCGTCGTGCGTCCCGTCAGTGCTGCAGCTGCTTCTCAAAA
CGTCCGCAAGAAGACGCAGgtacctccctcccttcttctctccctccctc
cctccctccctttcttaggccgtcatcactctctctgtctctctctgtct
gtctgtctctctctgtctctctctctgtctctctctctctctctctcctc
tctctctctctctctctctctttgtcatctcatctcctgtccttgaccac
acttatcctccctccctccctccttccctccttccctccctccctcagGC
CGTCCTCTCTCTCTCCATGGGCGAGTGGAAGGAGCTGTGTGACGTGTTTG
CCGTCTCCTCTCCCTCAGTTCCACACAGGGAAAATAGTGACCTCTACAAA
CCCTGCCCACTGCTCAAGAAAATCAAGGAGGGAGGGAGGGAGGGAGGGAG
GGAGGGAGGGAGGGCAGCAGAGGAGGAGGGAGGCGGGAAGGGAAAGAGGC
CAAAAGCATCATAA
back to top

protein sequence of NO16G02840.1

>NO16G02840.1-protein ID=NO16G02840.1-protein|Name=NO16G02840.1|organism=Nannochloropsis oceanica|type=polypeptide|length=415bp
MRAWCDAIRHCGVIADGDTDTPDSGLIVPPSHSPNPTLYDRSRYKKRPQR
SRTMPAAQAAACEKRTKSQKRQEQENFQKFIASKNPEERFKARQVLRAEG
SALLEDAKDLADPTKKALNEGITRNDKLGEMVAHPREAILDAENVNKLAN
AAKKQAESLSSTVRRYDWQAVLDGLRENPELRDGRGINWIKLGASVAACF
KNVPEIDFMLGPLEKPVPVRKERMKRVRHADEKGPEVQPEEVTQQTEKET
EDIGAVRVKAMMDVMGKTFQTNRTERSQQTTEVDIFNFLFDPLSFTQTVE
NIFDVSFLVKEDKTAIQLDANGIPVVRPVSAAAASQNVRKKTQAVLSLSM
GEWKELCDVFAVSSPSVPHRENSDLYKPCPLLKKIKEGGREGGREGGRAA
EEEGGGKGKRPKAS*
back to top
Synonyms
Publications