NO16G02840.1, NO16G02840.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G02840.1
Unique NameNO16G02840.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1245
Alignment locationchr16:817492..820305 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:817492..820305 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO16G02840.1 vs.
Match: XP_022091752.1 (non-structural maintenance of chromosomes element 4 homolog A-like [Acanthaster planci])

HSP 1 Score: 123.6 bits (309), Expect = 1.400e-24
Identity = 94/307 (30.62%), Postives = 151/307 (49.19%), Query Frame = 0 
Query:   85 NPEERFKARQVLRAEGSALLEDAKDLADPTKKALNEGITRNDKLGEMVAHP---REAILDAENVNKLANAAKKQAESLSSTVRRYDWQAVLDGL-------RENPELRDGRGI-----NWIKLGASVAACFKNVPEIDFMLGPLEK---PVPVRKERMKRVRHADEKGPEVQPEEVTQQTEKETEDIGAVRVKAMMDVMGKTFQTNRTERSQQTTE-VDIFNFLFDPLSFTQTVENIFDVSFLVKEDKTAIQLDANGIPVVRPVSAAAASQNVRK--KTQAVLSLSMGEWKELCDVFAVSSPSVPHR 371
            N E+R + RQ  R   +    + +DL  P    L   + R D L   V      REA LDA+ +  +++   +QA+ L S    +D     + L       R   E  + R +      W KLG +  +CF+  P   FMLG  E+   PV  RK+   R +  D  GP V P++V Q   K  +++    V+ M+ ++ +   TN  +  Q   E V +F F+ +P SF++TVENIF +SFLVK+    ++LD + +P++ P +     Q   +  + Q ++SL M +WKE+ +VF +  P +P R
Sbjct:   13 NHEKRRQLRQDYRNLIAETQRNRQDLIQPESDGLKNTLDRADTLFTQVTKSKCSREAALDAQLMVLVSSLGHEQAQKLHSDFHTFDPSEFAEKLITFMGDRRIRNEEGERRNVPFPKEGWSKLGRAAKSCFRRAPAFHFMLGSFERGEAPVKTRKQSAARQKEKDS-GPAVVPKQV-QSMGKSHQEVTTEEVERMLGILHQV--TNFDQEDQSEVEPVSLFEFVINPHSFSETVENIFHLSFLVKDGHAEVRLDDDRLPIIIPTTPYVEGQTNEQVDRKQVMISLDMQQWKEIVNVFEIKEPLIPRR 315
The following BLAST results are available for this feature:
BLAST of NO16G02840.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_022091752.11.400e-2430.62non-structural maintenance of chromosomes element ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G02840NO16G02840Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G02840.1NO16G02840.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G02840.1.cds1NO16G02840.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G02840.1.cds2NO16G02840.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G02840.1.cds3NO16G02840.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G02840.1.cds4NO16G02840.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G02840.1.cds5NO16G02840.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G02840.1.cds6NO16G02840.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G02840.1.cds7NO16G02840.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G02840.1.cds8NO16G02840.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G02840.1.cds9NO16G02840.1.cds9Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G02840.1.cds10NO16G02840.1.cds10Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G02840.1 ID=NO16G02840.1|Name=NO16G02840.1|organism=Nannochloropsis oceanica|type=mRNA|length=1245bp
ATGAGGGCGTGGTGTGATGCTATTCGTCACTGCGGGGTCATCGCCGACGG
CGACACGGACACGCCAGACTCGGGGCTAATCGTTCCACCATCCCACTCCC
CCAACCCCACCCTCTACGATAGGAGCCGGTACAAAAAACGACCACAACGA
AGCCGGACAATGCCTGCGGCGCAAGCAGCGGCTTGCGAGAAGCGAACCAA
ATCACAGAAGCGCCAAGAGCAGGAAAACTTCCAGAAGTTCATCGCCTCGA
AAAATCCCGAAGAAAGATTCAAGGCCCGGCAAGTACTCCGCGCGGAGGGG
AGCGCGCTCTTGGAAGATGCCAAGGACTTGGCAGACCCGACGAAGAAGGC
CTTAAACGAGGGGATAACCCGAAATGATAAATTGGGAGAGATGGTGGCCC
ATCCCCGCGAGGCTATCTTGGACGCCGAGAACGTGAACAAGCTGGCCAAT
GCCGCCAAGAAGCAAGCAGAGTCCTTGTCGTCGACTGTCCGACGTTATGA
CTGGCAGGCGGTGCTGGATGGCTTACGAGAGAATCCCGAATTGAGGGATG
GGCGGGGAATAAACTGGATTAAACTCGGGGCCTCGGTCGCTGCTTGTTTT
AAGAATGTTCCAGAAATAGACTTCATGCTCGGGCCACTGGAGAAGCCCGT
GCCCGTCAGAAAGGAGCGGATGAAGAGGGTGAGGCATGCGGATGAGAAGG
GTCCGGAGGTCCAGCCGGAGGAGGTGACACAGCAGACAGAGAAGGAGACG
GAGGACATAGGCGCCGTGCGGGTCAAGGCAATGATGGATGTAATGGGAAA
GACCTTTCAGACAAACAGGACGGAACGAAGCCAGCAGACGACGGAAGTAG
ATATTTTCAACTTCTTGTTCGATCCTTTATCGTTTACCCAGACTGTTGAG
AATATATTCGACGTCTCTTTTCTGGTCAAAGAGGACAAGACCGCCATCCA
GTTGGATGCGAATGGTATACCCGTCGTGCGTCCCGTCAGTGCTGCAGCTG
CTTCTCAAAACGTCCGCAAGAAGACGCAGGCCGTCCTCTCTCTCTCCATG
GGCGAGTGGAAGGAGCTGTGTGACGTGTTTGCCGTCTCCTCTCCCTCAGT
TCCACACAGGGAAAATAGTGACCTCTACAAACCCTGCCCACTGCTCAAGA
AAATCAAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGCAGCA
GAGGAGGAGGGAGGCGGGAAGGGAAAGAGGCCAAAAGCATCATAA
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protein sequence of NO16G02840.1

>NO16G02840.1-protein ID=NO16G02840.1-protein|Name=NO16G02840.1|organism=Nannochloropsis oceanica|type=polypeptide|length=415bp
MRAWCDAIRHCGVIADGDTDTPDSGLIVPPSHSPNPTLYDRSRYKKRPQR
SRTMPAAQAAACEKRTKSQKRQEQENFQKFIASKNPEERFKARQVLRAEG
SALLEDAKDLADPTKKALNEGITRNDKLGEMVAHPREAILDAENVNKLAN
AAKKQAESLSSTVRRYDWQAVLDGLRENPELRDGRGINWIKLGASVAACF
KNVPEIDFMLGPLEKPVPVRKERMKRVRHADEKGPEVQPEEVTQQTEKET
EDIGAVRVKAMMDVMGKTFQTNRTERSQQTTEVDIFNFLFDPLSFTQTVE
NIFDVSFLVKEDKTAIQLDANGIPVVRPVSAAAASQNVRKKTQAVLSLSM
GEWKELCDVFAVSSPSVPHRENSDLYKPCPLLKKIKEGGREGGREGGRAA
EEEGGGKGKRPKAS*
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mRNA from alignment at chr16:817492..820305-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G02840.1 ID=NO16G02840.1|Name=NO16G02840.1|organism=Nannochloropsis oceanica|type=mRNA|length=2814bp|location=Sequence derived from alignment at chr16:817492..820305- (Nannochloropsis oceanica)
ATGAGGGCGTGGTGTGATGCTATTCGTCACTGCGGGGTCATCGCCGACGG
CGACACGGACACGCCAGACTCGGGGCTAATCGTTCCACCATCCCACTCCC
CCAACCCCACCCTCTACGATAGGAGCCGGTACAAAAAACGACCACAACGA
AGCCGGACAATGCCTGCGGCGCAAGCAGCGGCTTGCGAGAAGCGAACCAA
ATCACAGAAGCGCCAAGAGCAGGTGAGCTTTCGCCTCGCCTCCCCCCCTC
CCTCCCTCCCTTGTTCCTCCCTCCTTTACGCCGTGCGCCCAAAATTGTCT
CTCCTTACAGCTCTCACGCGTGCAGCACACGGTAAACTTCGGTTAAGACA
GAGCCGTACTCCGTTTTCCGTCTTTGGACCGATTGCTGACCTCCCTCCTG
CTTCCTTCCCTCCCTTCCTTTCACCTTCCCTCTTTCCTTCCCTCCCTCTT
TCCCTCCTTTCCTCCCTCCGATCAGGAAAACTTCCAGAAGTTCATCGCCT
CGAAAAATCCCGAAGAAAGATTCAAGGCCCGGCAAGTACTCCGCGCGGAG
GGGAGCGCGCTCTTGGAAGATGCCAAGGACTTGGCAGACCCGACGAAGAA
GGCCTTAAACGAGGGGATAACCCGAAATGATAAATTGGGAGAGATGGTAA
GAGAGGGAGGGGAAGGGATGGAAGGCATAAGGATGAGTAGGGATGGAATT
TCTTTGATTGTTACGACGGAATGTGCTGGAAAGTTGTGTACAAAACGTCG
ACGGGTCCTGAAGCTCACTTCCCTTCTACTACTCCCCTCCCTTCTTCCCT
CCCTTCCTTCCATTCCTCCCTTCCTTCCTCCTCCTGCAGGTGGCCCATCC
CCGCGAGGCTATCTTGGACGCCGAGAACGTGAACAAGCTGGCCAATGCCG
CCAAGAAGCAAGCAGAGTCCTTGTCGTCGACTGTCCGACGGTAGGGAGGG
AGGGGGGACGGAGGGACGGAGGGATCGAGTCGAGGAAGTTATGTCCATTA
CCGTCCCTATCGCACTCATTAATTTTGAATTTTCAAACCAACAGTTATGA
CTGGCAGGCGGTGCTGGATGGCTTACGAGAGAATCCCGAATTGAGGGATG
GGCGGGGAATAAACTGGATTAAACTCGGGGTAGGTAGCACCCTCCCTCCC
TCCCTCCCTCCCTCCCTCTCATCCTGTCCCTTCCCTCCCTCTCTCCAGGC
CTCGGTCGCTGCTTGTTTTAAGAATGTTCCAGAAATAGACTTCATGCTCG
GGCCACTGGAGAAGCCCGTGCCCGTCAGAAAGGAGCGGATGAAGAGGTGA
GGAAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGATG
GGGTGAGGGTGGTGGAGAAGGGGGGATTCTACATATCGTTCATCAAAGGG
AGGGACGGAAGGAGACGAGAGGGGAAGGAAGGAAGGCGGGCCGATTCATT
CGTAATTTAATTTAAATCCTGTAATAATTGCTGGTAATTTATATTAATTG
CCATATATTATTGCTTGCTAATATAGGGTGAGGCATGCGGATGAGAAGGG
TCCGGAGGTCCAGCCGGAGGAGGTGACACAGCAGACAGAGAAGGAGACGG
AGGTAGGTGTGTTTGGCGGGGTGTTGCTGAAGTCCTTCCTCCCTCCCTCC
CTCCCTTCTTCCCTCTCCAAATTCGTTCTTCCAGGCTGCAGGCCTCGAGA
CCGATGGAGCTACATAAAGGCCACTTCCTCCCTCCCTTCCTTTCCATTTT
ACCGTCTCACTCATTGATCCTCCCTCCTTCCCTTCCTCCTTCCCCTCCCT
CGCTCCCTCCCTCCCTCCCTCCCTCAGGACATAGGCGCCGTGCGGGTCAA
GGCAATGATGGATGTAATGGGAAAGACCTTTCAGACAAACAGGACGGAAC
GAAGCCAGCAGACGACGGAAGTAGATATTTTCAACTTCTTGTTCGATCCT
TTATCGTTTACCCAGGTCAAAAGGGAGGAGGGAGGGAGGGAGGGAGGGAG
GGAGGGAGGGGCAGACAGTCAATGCATGGGAAGAGTAGTCATTTTATTGA
TTCGGACCTCGTTCTTCCCTCCTCCCTTCCTCCTTCTTCCATCCTCCCCC
TCCTCTAGACTGTTGAGAATATATTCGACGTCTCTTTTCTGGTCAAAGAG
GACAAGACCGCCATCCAGTTGGATGCGGTAGGTGCATGCTCCCCCCCCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCCCTCGCACCATTTCTC
CAGCGTCCTTCCCATCCATCCCTCCCTCCCTCCCTTCCTCCCTCCCTCAG
AATGGTATACCCGTCGTGCGTCCCGTCAGTGCTGCAGCTGCTTCTCAAAA
CGTCCGCAAGAAGACGCAGGTACCTCCCTCCCTTCTTCTCTCCCTCCCTC
CCTCCCTCCCTTTCTTAGGCCGTCATCACTCTCTCTGTCTCTCTCTGTCT
GTCTGTCTCTCTCTGTCTCTCTCTCTGTCTCTCTCTCTCTCTCTCTCCTC
TCTCTCTCTCTCTCTCTCTCTTTGTCATCTCATCTCCTGTCCTTGACCAC
ACTTATCCTCCCTCCCTCCCTCCTTCCCTCCTTCCCTCCCTCCCTCAGGC
CGTCCTCTCTCTCTCCATGGGCGAGTGGAAGGAGCTGTGTGACGTGTTTG
CCGTCTCCTCTCCCTCAGTTCCACACAGGGAAAATAGTGACCTCTACAAA
CCCTGCCCACTGCTCAAGAAAATCAAGGAGGGAGGGAGGGAGGGAGGGAG
GGAGGGAGGGAGGGCAGCAGAGGAGGAGGGAGGCGGGAAGGGAAAGAGGC
CAAAAGCATCATAA
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Coding sequence (CDS) from alignment at chr16:817492..820305-

>NO16G02840.1 ID=NO16G02840.1|Name=NO16G02840.1|organism=Nannochloropsis oceanica|type=CDS|length=1245bp|location=Sequence derived from alignment at chr16:817492..820305- (Nannochloropsis oceanica)
ATGAGGGCGTGGTGTGATGCTATTCGTCACTGCGGGGTCATCGCCGACGG
CGACACGGACACGCCAGACTCGGGGCTAATCGTTCCACCATCCCACTCCC
CCAACCCCACCCTCTACGATAGGAGCCGGTACAAAAAACGACCACAACGA
AGCCGGACAATGCCTGCGGCGCAAGCAGCGGCTTGCGAGAAGCGAACCAA
ATCACAGAAGCGCCAAGAGCAGGAAAACTTCCAGAAGTTCATCGCCTCGA
AAAATCCCGAAGAAAGATTCAAGGCCCGGCAAGTACTCCGCGCGGAGGGG
AGCGCGCTCTTGGAAGATGCCAAGGACTTGGCAGACCCGACGAAGAAGGC
CTTAAACGAGGGGATAACCCGAAATGATAAATTGGGAGAGATGGTGGCCC
ATCCCCGCGAGGCTATCTTGGACGCCGAGAACGTGAACAAGCTGGCCAAT
GCCGCCAAGAAGCAAGCAGAGTCCTTGTCGTCGACTGTCCGACGTTATGA
CTGGCAGGCGGTGCTGGATGGCTTACGAGAGAATCCCGAATTGAGGGATG
GGCGGGGAATAAACTGGATTAAACTCGGGGCCTCGGTCGCTGCTTGTTTT
AAGAATGTTCCAGAAATAGACTTCATGCTCGGGCCACTGGAGAAGCCCGT
GCCCGTCAGAAAGGAGCGGATGAAGAGGGTGAGGCATGCGGATGAGAAGG
GTCCGGAGGTCCAGCCGGAGGAGGTGACACAGCAGACAGAGAAGGAGACG
GAGGACATAGGCGCCGTGCGGGTCAAGGCAATGATGGATGTAATGGGAAA
GACCTTTCAGACAAACAGGACGGAACGAAGCCAGCAGACGACGGAAGTAG
ATATTTTCAACTTCTTGTTCGATCCTTTATCGTTTACCCAGACTGTTGAG
AATATATTCGACGTCTCTTTTCTGGTCAAAGAGGACAAGACCGCCATCCA
GTTGGATGCGAATGGTATACCCGTCGTGCGTCCCGTCAGTGCTGCAGCTG
CTTCTCAAAACGTCCGCAAGAAGACGCAGGCCGTCCTCTCTCTCTCCATG
GGCGAGTGGAAGGAGCTGTGTGACGTGTTTGCCGTCTCCTCTCCCTCAGT
TCCACACAGGGAAAATAGTGACCTCTACAAACCCTGCCCACTGCTCAAGA
AAATCAAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGCAGCA
GAGGAGGAGGGAGGCGGGAAGGGAAAGAGGCCAAAAGCATCATAA
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Synonyms
Publications