NO16G02710, NO16G02710 (gene) Nannochloropsis oceanica

Overview
NameNO16G02710
Unique NameNO16G02710
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1047
Alignment locationchr16:781036..782082 +

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Properties
Property NameValue
DescriptionPeptidyl-prolyl cis-trans isomerase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:781036..782082 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003755peptidyl-prolyl cis-trans isomerase activity
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0000413protein peptidyl-prolyl isomerization
Vocabulary: INTERPRO
TermDefinition
IPR029000Cyclophilin-like_dom
IPR024936Cyclophilin-type_PPIase
IPR002130Cyclophilin-type_PPIase_dom
Homology
BLAST of NO16G02710 vs. NCBI_GenBank
Match: EWM23837.1 (peptidyl-prolyl cis-trans isomerase [Nannochloropsis gaditana])

HSP 1 Score: 335.1 bits (858), Expect = 2.600e-88
Identity = 178/261 (68.20%), Postives = 205/261 (78.54%), Query Frame = 0
Query:   88 VSLPFLLLGSAAFLHPSKSLASSTTSFLLSLDGSAPSPSPSSLPSLAPITDKVYFDMAIAGQPAGTFTMGLFGKNSPEIVGIFLKVLNGEGQSASYVYSTVWRVLGGSCIDMGRVVGGGGKKLTKEINESGVMRIKTGNAADWTRNTEVNELRHVEPFLLTMKRGGGTFEFSVTTQANAELDKDHVVFGRLLMKEGGEEERFKKGNEEVIKNILNVKVSKDDPIASKKVFAAAGKGFDPRAKIIYLNKPLQKIVVTAAGML 349
            ++L  LLL S+   HP  +LASS  S       S+P+  PS LPS A +TDKV+FD++IAG PAGT +MG+FG  +P  VG FLKVLNG+GQSASY+YS+VWRVL GSCIDMGRV GGGGK+L +EINESGVMRIKT NAADWTRNTEVN L+H EPFLLTM RGGGTFEFSVTT     LD+DHVVFGRLLMK    EE+ ++ N+ V+  I  VKVS DD +ASK +FAAAGKGFDPRAKIIYLNKPLQKIVVTA GML
Sbjct:   98 MTLSLLLLSSSTLSHPVSTLASSPPS-----PSSSPALDPSFLPSNARVTDKVFFDISIAGVPAGTLSMGVFGDQAPVTVGNFLKVLNGQGQSASYMYSSVWRVLAGSCIDMGRVGGGGGKQLKREINESGVMRIKTENAADWTRNTEVNGLKHAEPFLLTMVRGGGTFEFSVTTAPVPALDRDHVVFGRLLMK---PEEKERESNQAVVDKIGRVKVSTDDIVASKTLFAAAGKGFDPRAKIIYLNKPLQKIVVTAVGML 350          
BLAST of NO16G02710 vs. NCBI_GenBank
Match: CEM14588.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 104.4 bits (259), Expect = 7.400e-19
Identity = 73/230 (31.74%), Postives = 120/230 (52.17%), Query Frame = 0
Query:  125 PSPSSLPSLAPITDKVYFDMAIAGQPAGTFTMGLFGKNSPEIVGIFLKVLNGEGQSA-SYVYSTVWRVLGGSCIDMGRVVGGGGKKLTKEINESGVMRIK-TGNAADWTRNTEVNELRHVEPFLLTMKRGGGTFEFSVTTQANAELDKDHVVFGRLLMKEGGEEERFKKGNEEVIKNILNVKVSKDDPIASKKVFAAAGKGF-DPRAK---IIYLNKPLQKIVVTAAGML 349
            P+P++ P    I+D+ Y DM + G+  G   +GL+G+ +P  V  F ++         SY YS + +V     + +G++ G G KK+ K+I+E+G +R+  T  A   T NT+     H    L++++RGGGTFEF VT Q   +LD+D++V G++L  EG           +VIK +  VK    + +  ++ F +  K   DPRA      Y   P+ K++    G+L
Sbjct:   18 PTPATAPR---ISDRCYLDMELNGKLLGRVVVGLWGEEAPTSVQTFAQLCGKTYPGGLSYAYSAMSKVFPNQLVVLGKITGDGTKKVDKKIDETGRVRVTYTDRATYETANTDSPSTSHSSEGLVSVRRGGGTFEFGVTLQPMPDLDRDYIVIGQVL--EG----------MDVIKRLSRVKYIPPEDL--REAFRSVAKAIGDPRASGGGDAY--SPVAKVITKNVGLL 228          
BLAST of NO16G02710 vs. NCBI_GenBank
Match: XP_005788569.1 (hypothetical protein EMIHUDRAFT_226708 [Emiliania huxleyi CCMP1516] >EOD36140.1 hypothetical protein EMIHUDRAFT_226708 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 88.2 bits (217), Expect = 5.500e-14
Identity = 52/155 (33.55%), Postives = 82/155 (52.90%), Query Frame = 0
Query:  136 ITDKVYFDMAIAGQPAGTFTMGLFGKNSPEIVGIFLKVLNG------EGQSASYVYSTVWRVLGGSCIDMGRVVGGGGKKLTKEINESGVMRIKTGNAADWTRNTEVNELRHVEPFLLTMKRGGGTFEFSVTTQANAELDKDHVVFGRLLMKEGG 285
            IT +    +AI   P  T ++GL+G  +PE V +F  +  G        ++ +Y  S++ R+     I  G + GG G+K+ +EI+ +G +R +T + AD   N + N L H    LL+M+RGG  FEF +T  AN  LD   +V G +L +  G
Sbjct:   16 ITSRAELRIAIGDSPPQTLSLGLYGTAAPESVALFEGLCRGISDAGRPPKTLTYAGSSISRIERDRIIVGGSLSGGNGRKVDREIDATGYVRTETLSRADAFANDDSNALPHDRAGLLSMRRGGRAFEFGLTPCANRALDATRIVVGEVLGEADG 170          
BLAST of NO16G02710 vs. NCBI_GenBank
Match: XP_005828459.1 (hypothetical protein GUITHDRAFT_141964 [Guillardia theta CCMP2712] >EKX41479.1 hypothetical protein GUITHDRAFT_141964 [Guillardia theta CCMP2712])

HSP 1 Score: 82.0 bits (201), Expect = 3.900e-12
Identity = 56/168 (33.33%), Postives = 88/168 (52.38%), Query Frame = 0
Query:  177 EGQSASYVYSTVWRVLGGSCIDMGRVVGGGGKKLTKEINESGVMRIKTGNAADWTRNTEVNELRHVEPFLLTMKRGGGTFEFSVTTQANAELDKDHVVFGRLLMKEGGEEERFKKGNEEVIKNILNVKVSKDDPIASKKVFAAAGKGF-DPRAKIIYLNKPLQKIVVT 344
            E +   Y YS +WRV+    +D GR+      KL ++                   N + NEL+H    L++ +RGGG FEF++T +AN ELD+++V+FG +  +E        +G EE I+ + N+ V++   +  +  F  +G+   D RAKI   N+PLQKI VT
Sbjct:   94 EDKPVGYEYSQLWRVVKDKRLDFGRI-----NKLYRQTE----------------NNNDSNELKHDRAGLVSTRRGGGQFEFTITPKANPELDQENVIFGSIACRE------VLEGLEE-IEKLNNIPVTQGQFL--EAAFKMSGQVIGDDRAKIQTTNRPLQKIYVT 231          
BLAST of NO16G02710 vs. NCBI_GenBank
Match: WP_008676017.1 (cyclophilin [Rhodopirellula sallentina] >EMI57026.1 cyclophilin [Rhodopirellula sallentina SM41])

HSP 1 Score: 72.4 bits (176), Expect = 3.100e-9
Identity = 60/178 (33.71%), Postives = 83/178 (46.63%), Query Frame = 0
Query:  112 TSFLLSLDGSAPSPSPSSL-PSLAPITDKVYFDMAIAGQPAGTFTMGLFGKNSPEIVGIFLKVLNGE------GQSASYVYSTVWRVLGGSCIDMGRVVGGGGKKLTKEINESGVMRIKTGNAADWTRNTEVNELRHVEPFLLTMKRGG---GTFEFSVTTQANAELDKDHVVFGRLL 280
            T  L++L  +  S + S+  P  A +T+KVYFD+ I G+PAG   MGLFGK+ P+ V  F  +  GE      G    Y  S   RV+ G  +  G    G G         +G   I   +  D     E  + RH +P +L+M   G      +F +TT     LD  HVVFGR+L
Sbjct:    7 TFMLVTLFAAICSSTVSAADPMEAEVTNKVYFDVTIGGEPAGRIVMGLFGKDVPKTVENFRALCTGEKGEGKSGVPLDYEGSAFHRVIPGFMLQGGDFTRGNG---------TGGESIYGSDFDD-----ENFKFRHSQPGILSMANAGKNTNGSQFFITTVPTPHLDGRHVVFGRVL 170          
BLAST of NO16G02710 vs. NCBI_GenBank
Match: XP_022148324.1 (peptidyl-prolyl cis-trans isomerase CYP20-1-like [Momordica charantia])

HSP 1 Score: 72.0 bits (175), Expect = 4.100e-9
Identity = 63/183 (34.43%), Postives = 84/183 (45.90%), Query Frame = 0
Query:  109 SSTTSFLLS---LDGSAPSPSPSSLPSLAPITDKVYFDMAIAGQPAGTFTMGLFGKNSPEIVGIFLKVLNGE------GQSASYVYSTVWRVLGGSCIDMGRVVGGGGKKLTKEINESGVMRIKTGNAADWTRNTEVNELRHVEPFLLTMKRGG---GTFEFSVTTQANAELDKDHVVFGRLL 280
            + T SF+LS   L GS       +  +L  +T KVYFD+ I G+PAG   MGLFGK  P+ V  F  +  GE      G+S  Y  S   R++    I  G    G G+         G   I     AD     E  +L+H  P LL+M   G      +F +TT   + LD  HVVFG++L
Sbjct:    2 AKTASFILSIFLLLGSLTLIQAKAKKNLKEVTHKVYFDIEIDGKPAGRIEMGLFGKAVPKTVENFRALCTGEKGVGQSGKSLHYKGSAFHRIIPSFMIQGGDFTHGDGR---------GGESIYGEKFAD-----ENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVL 170          
BLAST of NO16G02710 vs. NCBI_GenBank
Match: XP_021909914.1 (peptidyl-prolyl cis-trans isomerase CYP20-1 [Carica papaya] >AEK80448.1 peptidyl-prolyl cis-trans isomerase [Carica papaya])

HSP 1 Score: 71.6 bits (174), Expect = 5.300e-9
Identity = 64/186 (34.41%), Postives = 86/186 (46.24%), Query Frame = 0
Query:  104 SKSLASSTTSFLLSLDGSAP-SPSPSSLPSLAPITDKVYFDMAIAGQPAGTFTMGLFGKNSPEIVGIFLKVLNGE------GQSASYVYSTVWRVLGGSCIDMGRVVGGGGKKLTKEINESGVMRIKTGNAADWTRNTEVNELRHVEPFLLTMKRGG---GTFEFSVTTQANAELDKDHVVFGRLL 280
            S SL S T  + L+L G+     +  S   L  IT+KVYFD+ I G+PAG   MGLFGK  P+ V  F  +  GE      G+   Y  ST+ R++    I  G    G G          G   I     AD     E  +L+H  P LL+M   G      +F +TT   + LD  HVVFG+++
Sbjct:    4 SSSLFSLTLLWFLALFGTLTLIQAKKSNEDLKEITNKVYFDIEIDGKPAGRIVMGLFGKTVPKTVENFRALCTGEKGIGKNGKPLHYKGSTLHRIIPSFMIQGGDFTHGNG---------MGGESIYGEKFAD-----ENFKLKHTGPGLLSMANAGKDTNGSQFFITTVTTSWLDGRHVVFGKVV 175          
BLAST of NO16G02710 vs. NCBI_GenBank
Match: WP_009102295.1 (peptidyl-prolyl cis-trans isomerase [Rhodopirellula sp. SWK7] >EMI41953.1 (CYCLOPHILIN 5) peptidyl-prolyl cis-trans isomerase [Rhodopirellula sp. SWK7])

HSP 1 Score: 71.6 bits (174), Expect = 5.300e-9
Identity = 59/180 (32.78%), Postives = 82/180 (45.56%), Query Frame = 0
Query:  112 TSFLLSLDGSAPSPSPSSLPSL-APITDKVYFDMAIAGQPAGTFTMGLFGKNSPEIVGIFLKVLNGE------GQSASYVYSTVWRVLGGSCIDMGRVVGGGGKKLTKEINESGVMRIKTGNAADWTRNTEVN--ELRHVEPFLLTMKRGG---GTFEFSVTTQANAELDKDHVVFGRLL 280
            T  L++L  S    S S+  +  A +T+KVYFD+ I G+PAG   MGLFGK+ P+ V  F  +  GE      G    Y  S   RV+ G  +  G    G G                TG  + + R+ E    + RH  P LL+M   G      +F +TT     LD  HV+FGR++
Sbjct:    7 TLMLVTLFASMSLSSASAQDATKAEVTNKVYFDVTIGGEPAGRIVMGLFGKDVPKTVENFRALCTGEKGEGKAGVPLDYEGSAFHRVIPGFMLQGGDFTRGNG----------------TGGESIYGRDFEDENFKFRHSVPGLLSMANAGRNTNGSQFFITTVPTPHLDGMHVIFGRVI 170          
BLAST of NO16G02710 vs. NCBI_GenBank
Match: OAY83628.1 (Peptidyl-prolyl cis-trans isomerase CYP20-1 [Ananas comosus])

HSP 1 Score: 71.2 bits (173), Expect = 7.000e-9
Identity = 53/162 (32.72%), Postives = 75/162 (46.30%), Query Frame = 0
Query:  128 SSLPSLAPITDKVYFDMAIAGQPAGTFTMGLFGKNSPEIVGIFLKVLNGE------GQSASYVYSTVWRVLGGSCIDMGRVVGGGGKKLTKEINESGVMRIKTGNAADWTRNTEVN-ELRHVEPFLLTMKRGG---GTFEFSVTTQANAELDKDHVVFGRLL 280
            SS  SL  +T KVYFD+ I G+PAG   MGLFGK  P+    F  +  GE      G+   Y  S+  R++    I  G    G G               + G +   T+  + N +++H  P LL+M   G      +F +TT   + LD  HVVFG++L
Sbjct:   32 SSKESLKEVTHKVYFDIEIGGKPAGRIEMGLFGKTVPKTAENFRALCTGEKGIGKSGKPLHYKGSSFHRIIPSFMIQGGDFTLGDG---------------RGGESIYGTKFADENFKIKHTGPGLLSMANAGQDTNGSQFFITTVTTSWLDGKHVVFGKVL 178          
BLAST of NO16G02710 vs. NCBI_GenBank
Match: XP_005704837.1 (cyclophilin [Galdieria sulphuraria] >EME28317.1 cyclophilin [Galdieria sulphuraria])

HSP 1 Score: 70.9 bits (172), Expect = 9.100e-9
Identity = 68/255 (26.67%), Postives = 108/255 (42.35%), Query Frame = 0
Query:  136 ITDKVYFDMAIAGQPAGTFTMGLFGKNSPEIVGIFLKVLNG----------------------------EGQSASYVYSTVWRVLGGSCIDMGRVVGGGGKKLTKEINESGVMRIKTGNAADWTRNTEVNELRHVEPFLLTMKRGGGTFEFSVTTQANAELDKDHVVFGRLLMKEGGEEERFKKGNEEVIKNILNVKVSKDD------PIASK------KVFAAAGKG--FDPRAKIIYLNKPLQKIVVTAAGML 349
            +T++VYFD+++  +  G     L+G+++PE V  FL+ L G                            E    SY +S  +R   G  ++ G++      +LT  + ++    I  G         E N L+H E  LLT KR     EF +T   + ELD  H VFG+L            +   EV++ I ++ V  D        ++SK       +F   G+    D RA  IY NK L+++ V ++GML
Sbjct:   53 VTNRVYFDISVGNEYLGRMVFDLYGRDAPETVSTFLQFLKGVHNKDRTKDLNLSDQKLVEEEEEDLIYSEEPFVSYDFSLFYRCSPGILLEGGKI---PNLRLT-SVGDTTFYDI-GGALIAANPQVETNSLKHTERGLLTRKRLQFGPEFGITLAGHPELDVSHTVFGKL------------EQGYEVLEAIESLPVLVDSNRREGKTLSSKLFDWQRNLFLTIGRDVFHDKRADEIYPNKLLRRVAVISSGML 290          
The following BLAST results are available for this feature:
BLAST of NO16G02710 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM23837.12.600e-8868.20peptidyl-prolyl cis-trans isomerase [Nannochlorops... [more]
CEM14588.17.400e-1931.74unnamed protein product [Vitrella brassicaformis C... [more]
XP_005788569.15.500e-1433.55hypothetical protein EMIHUDRAFT_226708 [Emiliania ... [more]
XP_005828459.13.900e-1233.33hypothetical protein GUITHDRAFT_141964 [Guillardia... [more]
WP_008676017.13.100e-933.71cyclophilin [Rhodopirellula sallentina] >EMI57026.... [more]
XP_022148324.14.100e-934.43peptidyl-prolyl cis-trans isomerase CYP20-1-like [... [more]
XP_021909914.15.300e-934.41peptidyl-prolyl cis-trans isomerase CYP20-1 [Caric... [more]
WP_009102295.15.300e-932.78peptidyl-prolyl cis-trans isomerase [Rhodopirellul... [more]
OAY83628.17.000e-932.72Peptidyl-prolyl cis-trans isomerase CYP20-1 [Anana... [more]
XP_005704837.19.100e-926.67cyclophilin [Galdieria sulphuraria] >EME28317.1 cy... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR018ncniR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR034ngnoR034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR032ngnoR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO16G02710.1NO16G02710.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594008gene_6169Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100273g4gene6621Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO16G02710.1NO16G02710.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO16G02710 ID=NO16G02710|Name=NO16G02710|organism=Nannochloropsis oceanica|type=gene|length=1047bp
ATGGCATCGTCATCTTTTGGTGTCCCAGGGCGGCGGTTAATGGCCTTGTT
GCTCGTGATAACGACGGCCTCCAGCTTCTGCGTCCTGCCCAACGTCGCTC
CTGCCTTTGCCTTTTCTTGGGCGTCGCATGCTTTGCGGATGCCCACTTCC
TCGCTTTCTATGTCGTTGTCCTCCTCTTTCTTGTCGAGAGGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGAAGAGAGC
ACGCCTTCTCCGTGTCCTTACCTTTCCTCCTTCTCGGCAGTGCCGCCTTT
CTCCATCCCTCTAAATCCCTAGCTTCTTCCACCACCTCCTTCCTTCTCTC
CCTCGATGGAAGCGCCCCCTCTCCCTCTCCCTCGAGCCTCCCCTCCCTTG
CACCCATCACTGATAAAGTCTACTTCGACATGGCCATTGCTGGCCAACCC
GCCGGAACATTTACCATGGGGCTGTTTGGTAAGAATTCACCGGAAATAGT
GGGAATATTCTTGAAGGTTTTAAACGGCGAGGGGCAGAGTGCTAGTTATG
TGTATTCGACTGTCTGGCGGGTGTTAGGTGGGTCCTGTATTGATATGGGG
AGAGTGGTGGGAGGTGGAGGTAAGAAATTGACGAAGGAGATAAACGAAAG
TGGGGTCATGAGAATCAAAACAGGGAATGCGGCAGATTGGACGAGAAATA
CAGAGGTGAATGAATTGAGACATGTGGAGCCTTTTCTGTTGACGATGAAG
AGGGGCGGGGGTACGTTTGAATTTAGTGTGACCACCCAAGCGAATGCGGA
GCTCGATAAGGACCACGTGGTGTTTGGGAGGCTGCTCATGAAGGAGGGCG
GAGAGGAGGAGAGATTCAAAAAGGGGAATGAGGAGGTGATCAAGAACATC
TTGAATGTTAAGGTCAGCAAGGACGACCCGATTGCTAGCAAGAAGGTGTT
TGCGGCGGCGGGGAAGGGCTTTGATCCCCGGGCCAAGATCATTTATTTGA
ATAAGCCGTTGCAGAAGATTGTGGTAACGGCCGCGGGGATGCTTTGA
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protein sequence of NO16G02710.1

>NO16G02710.1-protein ID=NO16G02710.1-protein|Name=NO16G02710.1|organism=Nannochloropsis oceanica|type=polypeptide|length=349bp
MASSSFGVPGRRLMALLLVITTASSFCVLPNVAPAFAFSWASHALRMPTS
SLSMSLSSSFLSRGSSSSSSSSSSSSSSSSRREHAFSVSLPFLLLGSAAF
LHPSKSLASSTTSFLLSLDGSAPSPSPSSLPSLAPITDKVYFDMAIAGQP
AGTFTMGLFGKNSPEIVGIFLKVLNGEGQSASYVYSTVWRVLGGSCIDMG
RVVGGGGKKLTKEINESGVMRIKTGNAADWTRNTEVNELRHVEPFLLTMK
RGGGTFEFSVTTQANAELDKDHVVFGRLLMKEGGEEERFKKGNEEVIKNI
LNVKVSKDDPIASKKVFAAAGKGFDPRAKIIYLNKPLQKIVVTAAGML*
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Synonyms
Publications