NO16G02710.1, NO16G02710.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G02710.1
Unique NameNO16G02710.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1047
Alignment locationchr16:781036..782082 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:781036..782082 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO16G02710.1 vs.
Match: EWM23837.1 (peptidyl-prolyl cis-trans isomerase [Nannochloropsis gaditana])

HSP 1 Score: 329.3 bits (843), Expect = 1.400e-86
Identity = 196/326 (60.12%), Postives = 233/326 (71.47%), Query Frame = 0 
Query:   34 PAFAFSWASHALRMPTSSLSMSLSSSFLSRGSSSS-----------SSSSSSSSSSSSRREHAFSVSLPFLLLGSAAFLHPSKSLASSTTSFLLSLDGSAPSPSPSSLPSLAPITDKVYFDMAIAGQPAGTFTMGLFGKNSPEIVGIFLKVLNGEGQSASYVYSTVWRVLGGSCIDMGRVVGGGGKKLTKEINESGVMRIKTGNAADWTRNTEVNELRHVEPFLLTMKRGGGTFEFSVTTQANAELDKDHVVFGRLLMKEGGEEERFKKGNEEVIKNILNVKVSKDDPIASKKVFAAAGKGFDPRAKIIYLNKPLQKIVVTAAGML 349
            P   F  A+ +  M +++   SL+ S LS  SSSS            S ++   SS +RR+    ++L  LLL S+   HP  +LASS  S       S+P+  PS LPS A +TDKV+FD++IAG PAGT +MG+FG  +P  VG FLKVLNG+GQSASY+YS+VWRVL GSCIDMGRV GGGGK+L +EINESGVMRIKT NAADWTRNTEVN L+H EPFLLTM RGGGTFEFSVTT     LD+DHVVFGRLLMK    EE+ ++ N+ V+  I  VKVS DD +ASK +FAAAGKGFDPRAKIIYLNKPLQKIVVTA GML
Sbjct:   33 PRRTFQRAASSSSMSSAASPSSLAHSSLSTSSSSSMDASTLCPPSPDSDTNKWDSSKTRRDVLAPMTLSLLLLSSSTLSHPVSTLASSPPS-----PSSSPALDPSFLPSNARVTDKVFFDISIAGVPAGTLSMGVFGDQAPVTVGNFLKVLNGQGQSASYMYSSVWRVLAGSCIDMGRVGGGGGKQLKREINESGVMRIKTENAADWTRNTEVNGLKHAEPFLLTMVRGGGTFEFSVTTAPVPALDRDHVVFGRLLMK---PEEKERESNQAVVDKIGRVKVSTDDIVASKTLFAAAGKGFDPRAKIIYLNKPLQKIVVTAVGML 350
The following BLAST results are available for this feature:
BLAST of NO16G02710.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23837.11.400e-8660.12peptidyl-prolyl cis-trans isomerase [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G02710NO16G02710Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G02710.1NO16G02710.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G02710.1.cds1NO16G02710.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G02710.1 ID=NO16G02710.1|Name=NO16G02710.1|organism=Nannochloropsis oceanica|type=mRNA|length=1047bp
ATGGCATCGTCATCTTTTGGTGTCCCAGGGCGGCGGTTAATGGCCTTGTT
GCTCGTGATAACGACGGCCTCCAGCTTCTGCGTCCTGCCCAACGTCGCTC
CTGCCTTTGCCTTTTCTTGGGCGTCGCATGCTTTGCGGATGCCCACTTCC
TCGCTTTCTATGTCGTTGTCCTCCTCTTTCTTGTCGAGAGGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGAAGAGAGC
ACGCCTTCTCCGTGTCCTTACCTTTCCTCCTTCTCGGCAGTGCCGCCTTT
CTCCATCCCTCTAAATCCCTAGCTTCTTCCACCACCTCCTTCCTTCTCTC
CCTCGATGGAAGCGCCCCCTCTCCCTCTCCCTCGAGCCTCCCCTCCCTTG
CACCCATCACTGATAAAGTCTACTTCGACATGGCCATTGCTGGCCAACCC
GCCGGAACATTTACCATGGGGCTGTTTGGTAAGAATTCACCGGAAATAGT
GGGAATATTCTTGAAGGTTTTAAACGGCGAGGGGCAGAGTGCTAGTTATG
TGTATTCGACTGTCTGGCGGGTGTTAGGTGGGTCCTGTATTGATATGGGG
AGAGTGGTGGGAGGTGGAGGTAAGAAATTGACGAAGGAGATAAACGAAAG
TGGGGTCATGAGAATCAAAACAGGGAATGCGGCAGATTGGACGAGAAATA
CAGAGGTGAATGAATTGAGACATGTGGAGCCTTTTCTGTTGACGATGAAG
AGGGGCGGGGGTACGTTTGAATTTAGTGTGACCACCCAAGCGAATGCGGA
GCTCGATAAGGACCACGTGGTGTTTGGGAGGCTGCTCATGAAGGAGGGCG
GAGAGGAGGAGAGATTCAAAAAGGGGAATGAGGAGGTGATCAAGAACATC
TTGAATGTTAAGGTCAGCAAGGACGACCCGATTGCTAGCAAGAAGGTGTT
TGCGGCGGCGGGGAAGGGCTTTGATCCCCGGGCCAAGATCATTTATTTGA
ATAAGCCGTTGCAGAAGATTGTGGTAACGGCCGCGGGGATGCTTTGA
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protein sequence of NO16G02710.1

>NO16G02710.1-protein ID=NO16G02710.1-protein|Name=NO16G02710.1|organism=Nannochloropsis oceanica|type=polypeptide|length=349bp
MASSSFGVPGRRLMALLLVITTASSFCVLPNVAPAFAFSWASHALRMPTS
SLSMSLSSSFLSRGSSSSSSSSSSSSSSSSRREHAFSVSLPFLLLGSAAF
LHPSKSLASSTTSFLLSLDGSAPSPSPSSLPSLAPITDKVYFDMAIAGQP
AGTFTMGLFGKNSPEIVGIFLKVLNGEGQSASYVYSTVWRVLGGSCIDMG
RVVGGGGKKLTKEINESGVMRIKTGNAADWTRNTEVNELRHVEPFLLTMK
RGGGTFEFSVTTQANAELDKDHVVFGRLLMKEGGEEERFKKGNEEVIKNI
LNVKVSKDDPIASKKVFAAAGKGFDPRAKIIYLNKPLQKIVVTAAGML*
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mRNA from alignment at chr16:781036..782082+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G02710.1 ID=NO16G02710.1|Name=NO16G02710.1|organism=Nannochloropsis oceanica|type=mRNA|length=1047bp|location=Sequence derived from alignment at chr16:781036..782082+ (Nannochloropsis oceanica)
ATGGCATCGTCATCTTTTGGTGTCCCAGGGCGGCGGTTAATGGCCTTGTT
GCTCGTGATAACGACGGCCTCCAGCTTCTGCGTCCTGCCCAACGTCGCTC
CTGCCTTTGCCTTTTCTTGGGCGTCGCATGCTTTGCGGATGCCCACTTCC
TCGCTTTCTATGTCGTTGTCCTCCTCTTTCTTGTCGAGAGGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGAAGAGAGC
ACGCCTTCTCCGTGTCCTTACCTTTCCTCCTTCTCGGCAGTGCCGCCTTT
CTCCATCCCTCTAAATCCCTAGCTTCTTCCACCACCTCCTTCCTTCTCTC
CCTCGATGGAAGCGCCCCCTCTCCCTCTCCCTCGAGCCTCCCCTCCCTTG
CACCCATCACTGATAAAGTCTACTTCGACATGGCCATTGCTGGCCAACCC
GCCGGAACATTTACCATGGGGCTGTTTGGTAAGAATTCACCGGAAATAGT
GGGAATATTCTTGAAGGTTTTAAACGGCGAGGGGCAGAGTGCTAGTTATG
TGTATTCGACTGTCTGGCGGGTGTTAGGTGGGTCCTGTATTGATATGGGG
AGAGTGGTGGGAGGTGGAGGTAAGAAATTGACGAAGGAGATAAACGAAAG
TGGGGTCATGAGAATCAAAACAGGGAATGCGGCAGATTGGACGAGAAATA
CAGAGGTGAATGAATTGAGACATGTGGAGCCTTTTCTGTTGACGATGAAG
AGGGGCGGGGGTACGTTTGAATTTAGTGTGACCACCCAAGCGAATGCGGA
GCTCGATAAGGACCACGTGGTGTTTGGGAGGCTGCTCATGAAGGAGGGCG
GAGAGGAGGAGAGATTCAAAAAGGGGAATGAGGAGGTGATCAAGAACATC
TTGAATGTTAAGGTCAGCAAGGACGACCCGATTGCTAGCAAGAAGGTGTT
TGCGGCGGCGGGGAAGGGCTTTGATCCCCGGGCCAAGATCATTTATTTGA
ATAAGCCGTTGCAGAAGATTGTGGTAACGGCCGCGGGGATGCTTTGA
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Coding sequence (CDS) from alignment at chr16:781036..782082+

>NO16G02710.1 ID=NO16G02710.1|Name=NO16G02710.1|organism=Nannochloropsis oceanica|type=CDS|length=1047bp|location=Sequence derived from alignment at chr16:781036..782082+ (Nannochloropsis oceanica)
ATGGCATCGTCATCTTTTGGTGTCCCAGGGCGGCGGTTAATGGCCTTGTT
GCTCGTGATAACGACGGCCTCCAGCTTCTGCGTCCTGCCCAACGTCGCTC
CTGCCTTTGCCTTTTCTTGGGCGTCGCATGCTTTGCGGATGCCCACTTCC
TCGCTTTCTATGTCGTTGTCCTCCTCTTTCTTGTCGAGAGGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGAAGAGAGC
ACGCCTTCTCCGTGTCCTTACCTTTCCTCCTTCTCGGCAGTGCCGCCTTT
CTCCATCCCTCTAAATCCCTAGCTTCTTCCACCACCTCCTTCCTTCTCTC
CCTCGATGGAAGCGCCCCCTCTCCCTCTCCCTCGAGCCTCCCCTCCCTTG
CACCCATCACTGATAAAGTCTACTTCGACATGGCCATTGCTGGCCAACCC
GCCGGAACATTTACCATGGGGCTGTTTGGTAAGAATTCACCGGAAATAGT
GGGAATATTCTTGAAGGTTTTAAACGGCGAGGGGCAGAGTGCTAGTTATG
TGTATTCGACTGTCTGGCGGGTGTTAGGTGGGTCCTGTATTGATATGGGG
AGAGTGGTGGGAGGTGGAGGTAAGAAATTGACGAAGGAGATAAACGAAAG
TGGGGTCATGAGAATCAAAACAGGGAATGCGGCAGATTGGACGAGAAATA
CAGAGGTGAATGAATTGAGACATGTGGAGCCTTTTCTGTTGACGATGAAG
AGGGGCGGGGGTACGTTTGAATTTAGTGTGACCACCCAAGCGAATGCGGA
GCTCGATAAGGACCACGTGGTGTTTGGGAGGCTGCTCATGAAGGAGGGCG
GAGAGGAGGAGAGATTCAAAAAGGGGAATGAGGAGGTGATCAAGAACATC
TTGAATGTTAAGGTCAGCAAGGACGACCCGATTGCTAGCAAGAAGGTGTT
TGCGGCGGCGGGGAAGGGCTTTGATCCCCGGGCCAAGATCATTTATTTGA
ATAAGCCGTTGCAGAAGATTGTGGTAACGGCCGCGGGGATGCTTTGA
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Synonyms
Publications