NO16G02400, NO16G02400 (gene) Nannochloropsis oceanica

Overview
NameNO16G02400
Unique NameNO16G02400
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2067
Alignment locationchr16:690085..692151 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:690085..692151 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO16G02400 vs. NCBI_GenBank
Match: EWM23917.1 (hypothetical protein Naga_100082g20 [Nannochloropsis gaditana])

HSP 1 Score: 465.7 bits (1197), Expect = 1.400e-127
Identity = 262/368 (71.20%), Postives = 290/368 (78.80%), Query Frame = 0 
Query:   15 VLTAGVSVCSTIMIISGARGVAASTGAFAFPLGFWGTSDRIRLGQST----GARRQHISLSHGDSDRRATVPW----GVHATRLSRPSSRMPSSFSSTPPDGHA-TGEKKGMITVEDFVAQLEPFGVTGVRFGEDGQEDELAVCCPESRRLMDCTVDMYATVNGTQYCVALPIFSPVAICYHKGERLIPVENECELMDRLYDFLAPTLEQEDLFLIRSPVCLTLDGDLGDLGEDGEFSEEELAGWEEFDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTNPKYWDDEEASDVREAYGEDWEKIAAFTYDGVDYTMVKILEPVLVLAKDDPEFKGITKWVLPSEEEAEEVAPIMEGIIKVKLGIDD 374
            +LT  VSVCST MI+  +R V AS GAF    G WG       G  T    G  +   S+ HG++ R A+ PW    GV A+  + P     +   ++P D HA  G+++ M+TV+DF AQLEPFGVTGVRFGEDG++DELAVCCPESRRLMDCTVDMYATVN T YCVALPIFSPVA+CYHKG RLIPVENECELMDRLYDFLAPTLEQEDLFLIRSPVCLTLDGDLG       FSEEELAGWEEFDS XXXXXXXXXXXXXXXXXXX          +TNPKYWDDE+ASDVREAYGEDWEKIAAFTYDGVDYTMVKILEPVLVLAK+DP+FKGITKWVLPSE+EAEE+APIMEGIIK+KLGIDD
Sbjct:   15 LLTTAVSVCST-MILMSSRSVRASRGAFV-KQGLWGMPHSSHTGSRTPHKKGIEKLRFSVFHGNNYRGASFPWSTRSGVLASSRASPRLVARAPAMASPSDEHAEEGKRRSMLTVQDFAAQLEPFGVTGVRFGEDGEDDELAVCCPESRRLMDCTVDMYATVNSTNYCVALPIFSPVALCYHKGARLIPVENECELMDRLYDFLAPTLEQEDLFLIRSPVCLTLDGDLGXXXXXXXFSEEELAGWEEFDSEXXXXXXXXXXXXXXXXXXXAGTFDDEVEKMTNPKYWDDEQASDVREAYGEDWEKIAAFTYDGVDYTMVKILEPVLVLAKEDPDFKGITKWVLPSEDEAEEIAPIMEGIIKIKLGIDD 380
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BLAST of NO16G02400 vs. NCBI_GenBank
Match: WP_009557003.1 (DUF3727 domain-containing protein [Oscillatoriales cyanobacterium JSC-12] >EKQ68236.1 Protein of unknown function (DUF3727) [Oscillatoriales cyanobacterium JSC-12])

HSP 1 Score: 73.2 bits (178), Expect = 2.100e-9
Identity = 43/122 (35.25%), Postives = 67/122 (54.92%), Query Frame = 0 
Query:  135 VRFGEDGQEDELAVCCPESRRLMDCTVDMYATVNGTQYCVALPIFSPVAICYHKG----ERLIPVENECELMDRLYDFLAPTLEQEDLFLIRSPVCLTLDGDLGDLGEDGEFSEEELAGWEE 253
            +R   D  EDE  V   E+ R + C+V+ Y  +    Y + LPI +PV I   +G    E  +PV+ E   +D L++     LE+++L L R+ V LT+DGDL +L ++ EF+E    G E+
Sbjct:    5 IRISGDPTEDETVVLTDEAGRTIACSVERYLEIENQDYVLLLPIDTPVEIFVWQGEDENEEAVPVDEED--IDALFNTAKAVLEEQNLTLKRTAVVLTVDGDLPELDDEDEFAEVAAEGDED 124
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BLAST of NO16G02400 vs. NCBI_GenBank
Match: EJK47607.1 (hypothetical protein THAOC_33661 [Thalassiosira oceanica])

HSP 1 Score: 71.2 bits (173), Expect = 7.900e-9
Identity = 41/106 (38.68%), Postives = 62/106 (58.49%), Query Frame = 0 
Query:  133 TGVRFGEDGQEDELAVCCPESRRL-MDCTVDMYATVNGTQYCVALPIFSPVAICY-HKGERLIPVENECELMDRLYDFLAPTLEQ---EDLFLIRSPVCLTLDGDL 234
            T  +F +  ++D+  +   +S R+ +DC VD YATV+G +Y +  P    VA+CY    E+L+P+E E ELMD +Y      +E    E+L L R+P  LTL G+L
Sbjct:   65 TSNKFEKVDEDDDQIISFVDSDRVGIDCYVDSYATVDGVEYTIGSPCDYAVALCYFDSNEQLVPIELEEELMDEIYPIAEEIIEDEFGEELVLQRTPQTLTLVGEL 170
The following BLAST results are available for this feature:
BLAST of NO16G02400 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM23917.11.400e-12771.20hypothetical protein Naga_100082g20 [Nannochlorops... [more]
WP_009557003.12.100e-935.25DUF3727 domain-containing protein [Oscillatoriales... [more]
EJK47607.17.900e-938.68hypothetical protein THAOC_33661 [Thalassiosira oc... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL153nonsL153Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR018ncniR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR035ngnoR035Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003177NSK003177Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO16G02400.1NO16G02400.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593867gene_6135Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100082g20gene6530Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO16G02400.1NO16G02400.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO16G02400 ID=NO16G02400|Name=NO16G02400|organism=Nannochloropsis oceanica|type=gene|length=2067bp
ACACACTCAAGTATGGCACGAGATGACGACGGCAATATCATCCAGCGGCG
GTGGGTGCTCACGGCCGGCGTCAGTGTCTGCTCGACGATTATGATAATAT
CAGGCGCAAGAGGCGTAGCAGCAAGCACGGGCGCCTTTGCCTTCCCGCTA
GGCTTTTGGGGAACATCAGATAGGATCCGACTTGgtacgtaagggacaag
ggcatagatgtgcaaatgagaggcatctaccacgctctttttttcctggc
actgaatttctcgcattggatcttcaatactaatcaccccacatgcatca
ttccctacagGGCAAAGCACCGGCGCCAGGAGACAACACATTTCTCTTTC
ACATGGCGATAGTGACAGAAGAGCCACAGTACCGTGgtacgttttagaga
ctccgggggtctacccctgctggcattatcctattttgcccgtggaaacc
cgacacatacatgggcctgcgcattcacactctcacacacaataaccgta
cggcctccatttcttgtctctacacattctctgagtgcaccataaatgcc
attaaggcgggtccatcataacctaatgcctggcttgcgttgaatgttct
caccaatcagggcctgaccccgctcccctttcctattttcctccttcacc
tgatactagGGGCGTGCATGCCACCCGCCTGTCACGACCCTCCTCGCGCA
TGCCTTCTTCCTTTTCATCTACACCTCCAGATGGTCACGCCACAGGAGAA
AAGAAAGGAATGATCACGGTGGAGGACTTTGTTGCGCAGCTAGAGCCGTT
TGGAGTGACGGGAGTGCGCTTCGGGGAGGACGGGCAGGAGGACGAGCTGG
CCGTGTGCTGCCCCGAATCACGGCGGCTAATGGATTGTACGGTGGATATG
TACGCAACAGTGAATGGGACGCAGTACTGCGTGGCCTTGCCCATCTTTAG
CCCGGTAGCCATTTGCTATCACAAAGGCGAGCGGCTGATTCCTGTTGAGA
ACGAGTGCGAGCTCATGGACCGCCTGTACGATTTCTTGGCACCCACGCTC
GAACAGGAGGACCTTTTTCTCATCCGTAGCCCAGTGTGTTTGACACTGGA
TGGGGACCTGGGTGATTTGGGGGAGGACGGCGAATTCTCGGAAGAGGAGC
TGGCTGGCTGGGAGGAGTTTGACAGCGAGGAGGACCCATGGCAGGATGGA
GAGGAGGAGGACGAGGACGAGGAAGATGAGAATAAGTCCGAGCCTCTGGA
CGAGGAGATAGAGAAGCTGgtacgtatgtgtatgtccaggcggtgcaagg
aagaagggtgtcgtgtatcgcggggccggggagagaaggaaacgcacgtt
tctttgattgttgtaatagaaatagaggaagacaatgatgcaatgcgtgt
gatgattatcatatgcactcaggtacttaaaataatcctgtcctattaac
actggcacgattatacattttattttcttgcactttcccattcaatctcc
ccatcccaatcctcttcccgactctcaccattcctcacctccccaacccc
tccctccattcctccagACAAACCCCAAATACTGGGACGATGAGGAAGCG
AGCGATGTTCGAGAAGCGTACGGAGAAGATTGGGAGAAGATTGCGGCCTT
CACTTACGATGGCGTGGACTACACGATGGTCAAGATCCTGGAGCCCGTGC
TCGTGCTGGCAAAGGATGACCCGgtatgtttgtgggcgggagaagagaaa
aggggagggagaagacgtgccaatcattcacgtatggcaatacataacaa
aggacggcgtgtgtctgacaaagccctttgtatcaatccccatctctgac
ctgcccatatatccctccttccctccccaaacgacagGAGTTCAAGGGCA
TAACGAAATGGGTTCTTCCCAGCGAAGAGGAAGCTGAGGAAGTTGCTCCT
ATCATGGAAGGAATTATCAAGGTGAAGCTTGGCATTGACGACCAAGGCGA
GGAGGAGAGGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAGAAGAAG
AAGAGGAGGAGGAGTAG
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protein sequence of NO16G02400.1

>NO16G02400.1-protein ID=NO16G02400.1-protein|Name=NO16G02400.1|organism=Nannochloropsis oceanica|type=polypeptide|length=398bp
MARDDDGNIIQRRWVLTAGVSVCSTIMIISGARGVAASTGAFAFPLGFWG
TSDRIRLGQSTGARRQHISLSHGDSDRRATVPWGVHATRLSRPSSRMPSS
FSSTPPDGHATGEKKGMITVEDFVAQLEPFGVTGVRFGEDGQEDELAVCC
PESRRLMDCTVDMYATVNGTQYCVALPIFSPVAICYHKGERLIPVENECE
LMDRLYDFLAPTLEQEDLFLIRSPVCLTLDGDLGDLGEDGEFSEEELAGW
EEFDSEEDPWQDGEEEDEDEEDENKSEPLDEEIEKLTNPKYWDDEEASDV
REAYGEDWEKIAAFTYDGVDYTMVKILEPVLVLAKDDPEFKGITKWVLPS
EEEAEEVAPIMEGIIKVKLGIDDQGEEEREEEEEEEEEEEEEEEEEE*
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Synonyms
Publications