NO16G02400.1, NO16G02400.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G02400.1
Unique NameNO16G02400.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1206
Alignment locationchr16:690085..692151 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:690085..692151 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO16G02400.1 vs.
Match: EWM23917.1 (hypothetical protein Naga_100082g20 [Nannochloropsis gaditana])

HSP 1 Score: 506.5 bits (1303), Expect = 7.400e-140
Identity = 268/383 (69.97%), Postives = 312/383 (81.46%), Query Frame = 0 
Query:   15 VLTAGVSVCSTIMIISGARGVAASTGAFAFPLGFWGTSDRIRLGQST----GARRQHISLSHGDSDRRATVPW----GVHATRLSRPSSRMPSSFSSTPPDGHAT-GEKKGMITVEDFVAQLEPFGVTGVRFGEDGQEDELAVCCPESRRLMDCTVDMYATVNGTQYCVALPIFSPVAICYHKGERLIPVENECELMDRLYDFLAPTLEQEDLFLIRSPVCLTLDGDLGDLGEDGEFSEEELAGWEEFDSEEDPWQDGEEEDEDEEDENKSEPLDEEIEKLTNPKYWDDEEASDVREAYGEDWEKIAAFTYDGVDYTMVKILEPVLVLAKDDPEFKGITKWVLPSEEEAEEVAPIMEGIIKVKLGIDDQGEEEREEEEEEEEE 389
            +LT  VSVCST MI+  +R V AS GAF    G WG       G  T    G  +   S+ HG++ R A+ PW    GV A+  + P     +   ++P D HA  G+++ M+TV+DF AQLEPFGVTGVRFGEDG++DELAVCCPESRRLMDCTVDMYATVN T YCVALPIFSPVA+CYHKG RLIPVENECELMDRLYDFLAPTLEQEDLFLIRSPVCLTLDGDLGDLGE+GEFSEEELAGWEEFDSE+DPW+DG+EE+E+EE+++ +   D+E+EK+TNPKYWDDE+ASDVREAYGEDWEKIAAFTYDGVDYTMVKILEPVLVLAK+DP+FKGITKWVLPSE+EAEE+APIMEGIIK+KLGIDDQ  E+     ++EE+
Sbjct:   15 LLTTAVSVCST-MILMSSRSVRASRGAFV-KQGLWGMPHSSHTGSRTPHKKGIEKLRFSVFHGNNYRGASFPWSTRSGVLASSRASPRLVARAPAMASPSDEHAEEGKRRSMLTVQDFAAQLEPFGVTGVRFGEDGEDDELAVCCPESRRLMDCTVDMYATVNSTNYCVALPIFSPVALCYHKGARLIPVENECELMDRLYDFLAPTLEQEDLFLIRSPVCLTLDGDLGDLGEEGEFSEEELAGWEEFDSEDDPWEDGDEEEEEEEEDSMAGTFDDEVEKMTNPKYWDDEQASDVREAYGEDWEKIAAFTYDGVDYTMVKILEPVLVLAKEDPDFKGITKWVLPSEDEAEEIAPIMEGIIKIKLGIDDQDAEDETRGGDDEED 395
The following BLAST results are available for this feature:
BLAST of NO16G02400.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23917.17.400e-14069.97hypothetical protein Naga_100082g20 [Nannochlorops... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G02400NO16G02400Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G02400.1NO16G02400.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G02400.1.cds1NO16G02400.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G02400.1.cds2NO16G02400.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G02400.1.cds3NO16G02400.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G02400.1.cds4NO16G02400.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G02400.1.cds5NO16G02400.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G02400.1 ID=NO16G02400.1|Name=NO16G02400.1|organism=Nannochloropsis oceanica|type=mRNA|length=1206bp
ACACACTCAAGTATGGCACGAGATGACGACGGCAATATCATCCAGCGGCG
GTGGGTGCTCACGGCCGGCGTCAGTGTCTGCTCGACGATTATGATAATAT
CAGGCGCAAGAGGCGTAGCAGCAAGCACGGGCGCCTTTGCCTTCCCGCTA
GGCTTTTGGGGAACATCAGATAGGATCCGACTTGGGCAAAGCACCGGCGC
CAGGAGACAACACATTTCTCTTTCACATGGCGATAGTGACAGAAGAGCCA
CAGTACCGTGGGGCGTGCATGCCACCCGCCTGTCACGACCCTCCTCGCGC
ATGCCTTCTTCCTTTTCATCTACACCTCCAGATGGTCACGCCACAGGAGA
AAAGAAAGGAATGATCACGGTGGAGGACTTTGTTGCGCAGCTAGAGCCGT
TTGGAGTGACGGGAGTGCGCTTCGGGGAGGACGGGCAGGAGGACGAGCTG
GCCGTGTGCTGCCCCGAATCACGGCGGCTAATGGATTGTACGGTGGATAT
GTACGCAACAGTGAATGGGACGCAGTACTGCGTGGCCTTGCCCATCTTTA
GCCCGGTAGCCATTTGCTATCACAAAGGCGAGCGGCTGATTCCTGTTGAG
AACGAGTGCGAGCTCATGGACCGCCTGTACGATTTCTTGGCACCCACGCT
CGAACAGGAGGACCTTTTTCTCATCCGTAGCCCAGTGTGTTTGACACTGG
ATGGGGACCTGGGTGATTTGGGGGAGGACGGCGAATTCTCGGAAGAGGAG
CTGGCTGGCTGGGAGGAGTTTGACAGCGAGGAGGACCCATGGCAGGATGG
AGAGGAGGAGGACGAGGACGAGGAAGATGAGAATAAGTCCGAGCCTCTGG
ACGAGGAGATAGAGAAGCTGACAAACCCCAAATACTGGGACGATGAGGAA
GCGAGCGATGTTCGAGAAGCGTACGGAGAAGATTGGGAGAAGATTGCGGC
CTTCACTTACGATGGCGTGGACTACACGATGGTCAAGATCCTGGAGCCCG
TGCTCGTGCTGGCAAAGGATGACCCGGAGTTCAAGGGCATAACGAAATGG
GTTCTTCCCAGCGAAGAGGAAGCTGAGGAAGTTGCTCCTATCATGGAAGG
AATTATCAAGGTGAAGCTTGGCATTGACGACCAAGGCGAGGAGGAGAGGG
AAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAGAAGAAGAAGAGGAGGAG
GAGTAG
back to top

protein sequence of NO16G02400.1

>NO16G02400.1-protein ID=NO16G02400.1-protein|Name=NO16G02400.1|organism=Nannochloropsis oceanica|type=polypeptide|length=398bp
MARDDDGNIIQRRWVLTAGVSVCSTIMIISGARGVAASTGAFAFPLGFWG
TSDRIRLGQSTGARRQHISLSHGDSDRRATVPWGVHATRLSRPSSRMPSS
FSSTPPDGHATGEKKGMITVEDFVAQLEPFGVTGVRFGEDGQEDELAVCC
PESRRLMDCTVDMYATVNGTQYCVALPIFSPVAICYHKGERLIPVENECE
LMDRLYDFLAPTLEQEDLFLIRSPVCLTLDGDLGDLGEDGEFSEEELAGW
EEFDSEEDPWQDGEEEDEDEEDENKSEPLDEEIEKLTNPKYWDDEEASDV
REAYGEDWEKIAAFTYDGVDYTMVKILEPVLVLAKDDPEFKGITKWVLPS
EEEAEEVAPIMEGIIKVKLGIDDQGEEEREEEEEEEEEEEEEEEEEE*
back to top

mRNA from alignment at chr16:690085..692151+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G02400.1 ID=NO16G02400.1|Name=NO16G02400.1|organism=Nannochloropsis oceanica|type=mRNA|length=2067bp|location=Sequence derived from alignment at chr16:690085..692151+ (Nannochloropsis oceanica)
ACACACTCAAGTATGGCACGAGATGACGACGGCAATATCATCCAGCGGCG
GTGGGTGCTCACGGCCGGCGTCAGTGTCTGCTCGACGATTATGATAATAT
CAGGCGCAAGAGGCGTAGCAGCAAGCACGGGCGCCTTTGCCTTCCCGCTA
GGCTTTTGGGGAACATCAGATAGGATCCGACTTGGTACGTAAGGGACAAG
GGCATAGATGTGCAAATGAGAGGCATCTACCACGCTCTTTTTTTCCTGGC
ACTGAATTTCTCGCATTGGATCTTCAATACTAATCACCCCACATGCATCA
TTCCCTACAGGGCAAAGCACCGGCGCCAGGAGACAACACATTTCTCTTTC
ACATGGCGATAGTGACAGAAGAGCCACAGTACCGTGGTACGTTTTAGAGA
CTCCGGGGGTCTACCCCTGCTGGCATTATCCTATTTTGCCCGTGGAAACC
CGACACATACATGGGCCTGCGCATTCACACTCTCACACACAATAACCGTA
CGGCCTCCATTTCTTGTCTCTACACATTCTCTGAGTGCACCATAAATGCC
ATTAAGGCGGGTCCATCATAACCTAATGCCTGGCTTGCGTTGAATGTTCT
CACCAATCAGGGCCTGACCCCGCTCCCCTTTCCTATTTTCCTCCTTCACC
TGATACTAGGGGCGTGCATGCCACCCGCCTGTCACGACCCTCCTCGCGCA
TGCCTTCTTCCTTTTCATCTACACCTCCAGATGGTCACGCCACAGGAGAA
AAGAAAGGAATGATCACGGTGGAGGACTTTGTTGCGCAGCTAGAGCCGTT
TGGAGTGACGGGAGTGCGCTTCGGGGAGGACGGGCAGGAGGACGAGCTGG
CCGTGTGCTGCCCCGAATCACGGCGGCTAATGGATTGTACGGTGGATATG
TACGCAACAGTGAATGGGACGCAGTACTGCGTGGCCTTGCCCATCTTTAG
CCCGGTAGCCATTTGCTATCACAAAGGCGAGCGGCTGATTCCTGTTGAGA
ACGAGTGCGAGCTCATGGACCGCCTGTACGATTTCTTGGCACCCACGCTC
GAACAGGAGGACCTTTTTCTCATCCGTAGCCCAGTGTGTTTGACACTGGA
TGGGGACCTGGGTGATTTGGGGGAGGACGGCGAATTCTCGGAAGAGGAGC
TGGCTGGCTGGGAGGAGTTTGACAGCGAGGAGGACCCATGGCAGGATGGA
GAGGAGGAGGACGAGGACGAGGAAGATGAGAATAAGTCCGAGCCTCTGGA
CGAGGAGATAGAGAAGCTGGTACGTATGTGTATGTCCAGGCGGTGCAAGG
AAGAAGGGTGTCGTGTATCGCGGGGCCGGGGAGAGAAGGAAACGCACGTT
TCTTTGATTGTTGTAATAGAAATAGAGGAAGACAATGATGCAATGCGTGT
GATGATTATCATATGCACTCAGGTACTTAAAATAATCCTGTCCTATTAAC
ACTGGCACGATTATACATTTTATTTTCTTGCACTTTCCCATTCAATCTCC
CCATCCCAATCCTCTTCCCGACTCTCACCATTCCTCACCTCCCCAACCCC
TCCCTCCATTCCTCCAGACAAACCCCAAATACTGGGACGATGAGGAAGCG
AGCGATGTTCGAGAAGCGTACGGAGAAGATTGGGAGAAGATTGCGGCCTT
CACTTACGATGGCGTGGACTACACGATGGTCAAGATCCTGGAGCCCGTGC
TCGTGCTGGCAAAGGATGACCCGGTATGTTTGTGGGCGGGAGAAGAGAAA
AGGGGAGGGAGAAGACGTGCCAATCATTCACGTATGGCAATACATAACAA
AGGACGGCGTGTGTCTGACAAAGCCCTTTGTATCAATCCCCATCTCTGAC
CTGCCCATATATCCCTCCTTCCCTCCCCAAACGACAGGAGTTCAAGGGCA
TAACGAAATGGGTTCTTCCCAGCGAAGAGGAAGCTGAGGAAGTTGCTCCT
ATCATGGAAGGAATTATCAAGGTGAAGCTTGGCATTGACGACCAAGGCGA
GGAGGAGAGGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAGAAGAAG
AAGAGGAGGAGGAGTAG
back to top

Coding sequence (CDS) from alignment at chr16:690085..692151+

>NO16G02400.1 ID=NO16G02400.1|Name=NO16G02400.1|organism=Nannochloropsis oceanica|type=CDS|length=1194bp|location=Sequence derived from alignment at chr16:690085..692151+ (Nannochloropsis oceanica)
ATGGCACGAGATGACGACGGCAATATCATCCAGCGGCGGTGGGTGCTCAC
GGCCGGCGTCAGTGTCTGCTCGACGATTATGATAATATCAGGCGCAAGAG
GCGTAGCAGCAAGCACGGGCGCCTTTGCCTTCCCGCTAGGCTTTTGGGGA
ACATCAGATAGGATCCGACTTGGGCAAAGCACCGGCGCCAGGAGACAACA
CATTTCTCTTTCACATGGCGATAGTGACAGAAGAGCCACAGTACCGTGGG
GCGTGCATGCCACCCGCCTGTCACGACCCTCCTCGCGCATGCCTTCTTCC
TTTTCATCTACACCTCCAGATGGTCACGCCACAGGAGAAAAGAAAGGAAT
GATCACGGTGGAGGACTTTGTTGCGCAGCTAGAGCCGTTTGGAGTGACGG
GAGTGCGCTTCGGGGAGGACGGGCAGGAGGACGAGCTGGCCGTGTGCTGC
CCCGAATCACGGCGGCTAATGGATTGTACGGTGGATATGTACGCAACAGT
GAATGGGACGCAGTACTGCGTGGCCTTGCCCATCTTTAGCCCGGTAGCCA
TTTGCTATCACAAAGGCGAGCGGCTGATTCCTGTTGAGAACGAGTGCGAG
CTCATGGACCGCCTGTACGATTTCTTGGCACCCACGCTCGAACAGGAGGA
CCTTTTTCTCATCCGTAGCCCAGTGTGTTTGACACTGGATGGGGACCTGG
GTGATTTGGGGGAGGACGGCGAATTCTCGGAAGAGGAGCTGGCTGGCTGG
GAGGAGTTTGACAGCGAGGAGGACCCATGGCAGGATGGAGAGGAGGAGGA
CGAGGACGAGGAAGATGAGAATAAGTCCGAGCCTCTGGACGAGGAGATAG
AGAAGCTGACAAACCCCAAATACTGGGACGATGAGGAAGCGAGCGATGTT
CGAGAAGCGTACGGAGAAGATTGGGAGAAGATTGCGGCCTTCACTTACGA
TGGCGTGGACTACACGATGGTCAAGATCCTGGAGCCCGTGCTCGTGCTGG
CAAAGGATGACCCGGAGTTCAAGGGCATAACGAAATGGGTTCTTCCCAGC
GAAGAGGAAGCTGAGGAAGTTGCTCCTATCATGGAAGGAATTATCAAGGT
GAAGCTTGGCATTGACGACCAAGGCGAGGAGGAGAGGGAAGAGGAGGAGG
AGGAGGAGGAGGAGGAAGAAGAAGAAGAAGAGGAGGAGGAGTAG
back to top
Synonyms
Publications