NO16G02340, NO16G02340 (gene) Nannochloropsis oceanica

Overview
NameNO16G02340
Unique NameNO16G02340
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1118
Alignment locationchr16:674165..675282 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:674165..675282 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of NO16G02340 vs. NCBI_GenBank
Match: EWM23930.1 (hypothetical protein Naga_100082g13 [Nannochloropsis gaditana])

HSP 1 Score: 187.2 bits (474), Expect = 3.400e-44
Identity = 97/139 (69.78%), Postives = 108/139 (77.70%), Query Frame = 0 
Query:    1 MFQGRRVLATFLLVVGLLGTA--AFYLRTAPPPGSCSALHAE-KNDMTTRRAWIPQIALSLLTPLVLTVGAGAGAAQAVDPARLGTKKDPVYEKCLNQCIYFCLKPKGVNVRTRSDCLQDCKAQCAQTDAQKMLGLPKK 137
            MF GRR     LL+VGL+GTA  AF LRT PP  SCSAL AE +++M TRR  + QIA SLLTP VLT  AGA  A AVDPAR+GTKKDP YEKCL+ CIYFCLKPKG   RTRSDCL DCKA+CAQTDAQK+LG+PKK
Sbjct:   22 MFPGRRSFLLVLLMVGLIGTATLAFLLRTGPPSRSCSALDAERRSEMATRRVGVQQIAFSLLTPFVLT--AGADVAAAVDPARVGTKKDPAYEKCLSSCIYFCLKPKGAETRTRSDCLPDCKAKCAQTDAQKLLGVPKK 158
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BLAST of NO16G02340 vs. NCBI_GenBank
Match: XP_002179565.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC48551.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 85.1 bits (209), Expect = 1.800e-13
Identity = 45/109 (41.28%), Postives = 60/109 (55.05%), Query Frame = 0 
Query:   28 APPPGSCSALHAEKNDMTTRRAWIPQIALSLLTPLVLTVGAGAGAAQAVDPARLGTKKDPVYEKCLNQCIYFCLKPKGVNVRTRSDCLQDCKAQCAQTDAQKMLGLPKK 137
            APPP S  A     + + +RR +   +AL+   P          AA+ VD +  GTKKDP YE CL++C+Y C KPKG   ++R+ CL +CK  CA    Q MLG P K
Sbjct:   28 APPPSSFRAPPDTVDPLQSRRVFGSVLALAWTIPT-------TAAAKDVDSSVKGTKKDPTYEACLSKCVYECTKPKGTEQKSRAVCLPECKQTCATNKEQLMLGQPLK 129
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BLAST of NO16G02340 vs. NCBI_GenBank
Match: EJK66018.1 (hypothetical protein THAOC_13082 [Thalassiosira oceanica])

HSP 1 Score: 82.8 bits (203), Expect = 9.100e-13
Identity = 43/124 (34.68%), Postives = 66/124 (53.23%), Query Frame = 0 
Query:   12 LLVVGLLGTAAFYLRTAPPPGSCSALHAEKNDMTTRRAWIPQIALSLLTPLVLTVGAGAGAAQAVDPARLGTKKDPVYEKCLNQCIYFCLKPKGVNVRTRSDCLQDCKAQCAQTDAQKMLGLPK 136
            +L++  +G +  Y        S S   +    ++ R A++  I        +L     +  A+ +DPA  GTK DP Y+ CL+ CIY C KPKGV  +TR++CL +CK++CA T  Q + G PK
Sbjct:   13 ILLLAAIGRSTSY--------SVSTSRSNLGSVSNRGAFLRHIGAGCAATFLLP--TQSAIAKEIDPALKGTKADPEYQSCLSTCIYECTKPKGVEQKTRAECLPECKSKCATTKQQLLTGAPK 126
[Close]
BLAST of NO16G02340 vs. NCBI_GenBank
Match: EWM23931.1 (hypothetical protein Naga_100082g13 [Nannochloropsis gaditana])

HSP 1 Score: 77.8 bits (190), Expect = 2.900e-11
Identity = 46/76 (60.53%), Postives = 52/76 (68.42%), Query Frame = 0 
Query:    1 MFQGRRVLATFLLVVGLLGTA--AFYLRTAPPPGSCSALHAE-KNDMTTRRAWIPQIALSLLTPLVLTVGAGAGAA 74
            MF GRR     LL+VGL+GTA  AF LRT PP  SCSAL AE +++M TRR  + QIA SLLTP VLT GA   AA
Sbjct:   22 MFPGRRSFLLVLLMVGLIGTATLAFLLRTGPPSRSCSALDAERRSEMATRRVGVQQIAFSLLTPFVLTAGADVAAA 97
The following BLAST results are available for this feature:
BLAST of NO16G02340 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 4
Match NameE-valueIdentityDescription
EWM23930.13.400e-4469.78hypothetical protein Naga_100082g13 [Nannochlorops... [more]
XP_002179565.11.800e-1341.28predicted protein [Phaeodactylum tricornutum CCAP ... [more]
EJK66018.19.100e-1334.68hypothetical protein THAOC_13082 [Thalassiosira oc... [more]
EWM23931.12.900e-1160.53hypothetical protein Naga_100082g13 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL153nonsL153Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR018ncniR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR035ngnoR035Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003186NSK003186Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO16G02340.1NO16G02340.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593835gene_6129Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100082g13gene6536Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO16G02340.1NO16G02340.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO16G02340 ID=NO16G02340|Name=NO16G02340|organism=Nannochloropsis oceanica|type=gene|length=1118bp
TATGGCGGCATAGAAATCGCTCGTTTCAGATGAACGACCGTCCCGACTTT
TATAGCGTAGCTTGCGTGCCTGTGCCTGTGTCCCTTTGGGCCTCTGGGAC
AGCAACATGTGAGGACGATGCTGAAATTTATTGAGGCATACATGCGGAGA
GTTAGTCCGCTGTGTCCACTGCGTCTTTATTACTCAACGTGATATATATA
CGATACTACCCTTCGCCACCATCATCCGACCGTCGTCATCACTAATTTCT
TGCTTGCCCCTTCCCAACCCACCCACTCACAGCACAACACCAAATCTCTA
CACCTCAGGCCCCTTAACATCTTCTAACTCCTCTTCAGCATGTTTCAAGg
taggggtactttatctgccttgcacaggcagtcgccttgagttactcgcc
cagtcacccagagtgtgtgtcgcaccccgtttgcattgtcgagggcacgc
gagcacgcacaggcttaccaccaaggactttgtgccccatccctcccaca
cacgcacgcttctttagGTCGTCGAGTCCTCGCAACGTTTCTGTTGGTGG
TGGGCTTGCTGGGTACGGCCGCGTTTTATCTGCGGACAGCCCCGCCACCG
GGGTCTTGCAGCGCACTTCACGCTGAGAAAAATGACATGACGACGCGCCG
CGCATGGATCCCCCAAATTGCCTTGAGTTTATTGACGCCACTAGTATTGA
CGGTGGGTGCCGGTGCCGGTGCCGCGCAAGCAGTGgtaagtgcctattct
tcttcatctatcactttcactagccaaaactctacttcttctttctctct
catttttctctcctccaccccttcaacagGACCCGGCCCGCCTTGGCACG
AAGAAGGATCCGGTGTACGAGAAATGTCTGAATCAGTGCATCTATTTTTG
CCTCAAGCCCAAGGGCGTGAATGTGAGGACACGGTCGGACTGTCTGCAAG
ACTGCAAGGCGCAGTGTGCGCAGACGGACGCACAAAAGATGTTGGGGCTT
CCGAAGAAGTGAGCGGGAGTTAGAAGGAGCACTCTAAGAGGAATAGCGAA
TTTTTTTTCGAGGGATGCTCTCCGCAATTCCTTTGAGATATAGAAAGAAG
ACGAGAAACACTAAACAG
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protein sequence of NO16G02340.1

>NO16G02340.1-protein ID=NO16G02340.1-protein|Name=NO16G02340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=137bp
MFQGRRVLATFLLVVGLLGTAAFYLRTAPPPGSCSALHAEKNDMTTRRAW
IPQIALSLLTPLVLTVGAGAGAAQAVDPARLGTKKDPVYEKCLNQCIYFC
LKPKGVNVRTRSDCLQDCKAQCAQTDAQKMLGLPKK*
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Synonyms
Publications