NO16G02340.1, NO16G02340.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G02340.1
Unique NameNO16G02340.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length856
Alignment locationchr16:674165..675282 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:674165..675282 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO16G02340.1 vs.
Match: EWM23930.1 (hypothetical protein Naga_100082g13 [Nannochloropsis gaditana])

HSP 1 Score: 187.2 bits (474), Expect = 3.400e-44
Identity = 97/139 (69.78%), Postives = 108/139 (77.70%), Query Frame = 0 
Query:    1 MFQGRRVLATFLLVVGLLGTA--AFYLRTAPPPGSCSALHAEK-NDMTTRRAWIPQIALSLLTPLVLTVGAGAGAAQAVDPARLGTKKDPVYEKCLNQCIYFCLKPKGVNVRTRSDCLQDCKAQCAQTDAQKMLGLPKK 137
            MF GRR     LL+VGL+GTA  AF LRT PP  SCSAL AE+ ++M TRR  + QIA SLLTP VLT  AGA  A AVDPAR+GTKKDP YEKCL+ CIYFCLKPKG   RTRSDCL DCKA+CAQTDAQK+LG+PKK
Sbjct:   22 MFPGRRSFLLVLLMVGLIGTATLAFLLRTGPPSRSCSALDAERRSEMATRRVGVQQIAFSLLTPFVLT--AGADVAAAVDPARVGTKKDPAYEKCLSSCIYFCLKPKGAETRTRSDCLPDCKAKCAQTDAQKLLGVPKK 158
The following BLAST results are available for this feature:
BLAST of NO16G02340.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23930.13.400e-4469.78hypothetical protein Naga_100082g13 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G02340NO16G02340Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G02340.1NO16G02340.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G02340.1.cds1NO16G02340.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G02340.1.cds2NO16G02340.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G02340.1.cds3NO16G02340.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G02340.1 ID=NO16G02340.1|Name=NO16G02340.1|organism=Nannochloropsis oceanica|type=mRNA|length=856bp
TATGGCGGCATAGAAATCGCTCGTTTCAGATGAACGACCGTCCCGACTTT
TATAGCGTAGCTTGCGTGCCTGTGCCTGTGTCCCTTTGGGCCTCTGGGAC
AGCAACATGTGAGGACGATGCTGAAATTTATTGAGGCATACATGCGGAGA
GTTAGTCCGCTGTGTCCACTGCGTCTTTATTACTCAACGTGATATATATA
CGATACTACCCTTCGCCACCATCATCCGACCGTCGTCATCACTAATTTCT
TGCTTGCCCCTTCCCAACCCACCCACTCACAGCACAACACCAAATCTCTA
CACCTCAGGCCCCTTAACATCTTCTAACTCCTCTTCAGCATGTTTCAAGG
TCGTCGAGTCCTCGCAACGTTTCTGTTGGTGGTGGGCTTGCTGGGTACGG
CCGCGTTTTATCTGCGGACAGCCCCGCCACCGGGGTCTTGCAGCGCACTT
CACGCTGAGAAAAATGACATGACGACGCGCCGCGCATGGATCCCCCAAAT
TGCCTTGAGTTTATTGACGCCACTAGTATTGACGGTGGGTGCCGGTGCCG
GTGCCGCGCAAGCAGTGGACCCGGCCCGCCTTGGCACGAAGAAGGATCCG
GTGTACGAGAAATGTCTGAATCAGTGCATCTATTTTTGCCTCAAGCCCAA
GGGCGTGAATGTGAGGACACGGTCGGACTGTCTGCAAGACTGCAAGGCGC
AGTGTGCGCAGACGGACGCACAAAAGATGTTGGGGCTTCCGAAGAAGTGA
GCGGGAGTTAGAAGGAGCACTCTAAGAGGAATAGCGAATTTTTTTTCGAG
GGATGCTCTCCGCAATTCCTTTGAGATATAGAAAGAAGACGAGAAACACT
AAACAG
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protein sequence of NO16G02340.1

>NO16G02340.1-protein ID=NO16G02340.1-protein|Name=NO16G02340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=137bp
MFQGRRVLATFLLVVGLLGTAAFYLRTAPPPGSCSALHAEKNDMTTRRAW
IPQIALSLLTPLVLTVGAGAGAAQAVDPARLGTKKDPVYEKCLNQCIYFC
LKPKGVNVRTRSDCLQDCKAQCAQTDAQKMLGLPKK*
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mRNA from alignment at chr16:674165..675282+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G02340.1 ID=NO16G02340.1|Name=NO16G02340.1|organism=Nannochloropsis oceanica|type=mRNA|length=1118bp|location=Sequence derived from alignment at chr16:674165..675282+ (Nannochloropsis oceanica)
TATGGCGGCATAGAAATCGCTCGTTTCAGATGAACGACCGTCCCGACTTT
TATAGCGTAGCTTGCGTGCCTGTGCCTGTGTCCCTTTGGGCCTCTGGGAC
AGCAACATGTGAGGACGATGCTGAAATTTATTGAGGCATACATGCGGAGA
GTTAGTCCGCTGTGTCCACTGCGTCTTTATTACTCAACGTGATATATATA
CGATACTACCCTTCGCCACCATCATCCGACCGTCGTCATCACTAATTTCT
TGCTTGCCCCTTCCCAACCCACCCACTCACAGCACAACACCAAATCTCTA
CACCTCAGGCCCCTTAACATCTTCTAACTCCTCTTCAGCATGTTTCAAGG
TAGGGGTACTTTATCTGCCTTGCACAGGCAGTCGCCTTGAGTTACTCGCC
CAGTCACCCAGAGTGTGTGTCGCACCCCGTTTGCATTGTCGAGGGCACGC
GAGCACGCACAGGCTTACCACCAAGGACTTTGTGCCCCATCCCTCCCACA
CACGCACGCTTCTTTAGGTCGTCGAGTCCTCGCAACGTTTCTGTTGGTGG
TGGGCTTGCTGGGTACGGCCGCGTTTTATCTGCGGACAGCCCCGCCACCG
GGGTCTTGCAGCGCACTTCACGCTGAGAAAAATGACATGACGACGCGCCG
CGCATGGATCCCCCAAATTGCCTTGAGTTTATTGACGCCACTAGTATTGA
CGGTGGGTGCCGGTGCCGGTGCCGCGCAAGCAGTGGTAAGTGCCTATTCT
TCTTCATCTATCACTTTCACTAGCCAAAACTCTACTTCTTCTTTCTCTCT
CATTTTTCTCTCCTCCACCCCTTCAACAGGACCCGGCCCGCCTTGGCACG
AAGAAGGATCCGGTGTACGAGAAATGTCTGAATCAGTGCATCTATTTTTG
CCTCAAGCCCAAGGGCGTGAATGTGAGGACACGGTCGGACTGTCTGCAAG
ACTGCAAGGCGCAGTGTGCGCAGACGGACGCACAAAAGATGTTGGGGCTT
CCGAAGAAGTGAGCGGGAGTTAGAAGGAGCACTCTAAGAGGAATAGCGAA
TTTTTTTTCGAGGGATGCTCTCCGCAATTCCTTTGAGATATAGAAAGAAG
ACGAGAAACACTAAACAG
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Coding sequence (CDS) from alignment at chr16:674165..675282+

>NO16G02340.1 ID=NO16G02340.1|Name=NO16G02340.1|organism=Nannochloropsis oceanica|type=CDS|length=411bp|location=Sequence derived from alignment at chr16:674165..675282+ (Nannochloropsis oceanica)
ATGTTTCAAGGTCGTCGAGTCCTCGCAACGTTTCTGTTGGTGGTGGGCTT
GCTGGGTACGGCCGCGTTTTATCTGCGGACAGCCCCGCCACCGGGGTCTT
GCAGCGCACTTCACGCTGAGAAAAATGACATGACGACGCGCCGCGCATGG
ATCCCCCAAATTGCCTTGAGTTTATTGACGCCACTAGTATTGACGGTGGG
TGCCGGTGCCGGTGCCGCGCAAGCAGTGGACCCGGCCCGCCTTGGCACGA
AGAAGGATCCGGTGTACGAGAAATGTCTGAATCAGTGCATCTATTTTTGC
CTCAAGCCCAAGGGCGTGAATGTGAGGACACGGTCGGACTGTCTGCAAGA
CTGCAAGGCGCAGTGTGCGCAGACGGACGCACAAAAGATGTTGGGGCTTC
CGAAGAAGTGA
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Synonyms
Publications