NO16G01110, NO16G01110 (gene) Nannochloropsis oceanica

Overview
NameNO16G01110
Unique NameNO16G01110
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1885
Alignment locationchr16:349317..351201 +

Link to JBrowse

Properties
Property NameValue
DescriptionLate embryogenesis abundant protein (LEA) family protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:349317..351201 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO16G01110 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL150nonsL150Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR018ncniR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR031ngnoR031Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO16G01110.1NO16G01110.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO16G01110.2NO16G01110.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO16G01110.1NO16G01110.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO16G01110.2NO16G01110.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO16G01110 ID=NO16G01110|Name=NO16G01110|organism=Nannochloropsis oceanica|type=gene|length=1885bp
ATGGACCGCTTCCTCCTTGTGGCACGTGCGGCCAAGGCCCTGCCTGTGGC
GTGTGGTGGACGCCCTACTTCTGCGACGGCCCGTAACGCCATGGCTTCCT
TTACCATTGCACGTAGCTCTTGTGCTGGTAGAGTCGTCTCATCGCGCACC
ACACTTATGGCTCATCGTCCTTTCTTCCTTTGCAGCCGTGGTGTTGGCGC
GGGAGGTGGGCGTGAGGAGGAAACGCTCGTCGTCCAGCCTTTCGCGGTCA
ACGCCCTCAACACTCCGGGGGTGCGACAAGGgtacgtttgtgtcagggat
cgagatcccacaggtcgtgtgttctgatgtgtcgatcgatattctgccac
ctacagGTGCACTGAAAACAGGAACATTCGCCTTTCGCGCTTTGTCCGGC
ACTTTGCCTCTTCCTCAACCCCCCCGCCAAACCCGCCGCCAGGACGAGAA
GGGGATTCCCACAAGCACAAGACAACTGAGCTTTATGAAGACGCCAAGGA
CAAAGCCGAGCATTTATGGGAGGATACAAAAGAGGCAGCAAGCGAGGCGA
AAGAGACACTGGCCGATGCTACATCCGTTGCTAAAGAGAAACTCCAGAAA
ACGTCTGGCACGGTAGCGGAGAAAGTGAAGGATATGACTCAGACTATGAA
AGAGAAGGCGCAAGAGGCGAAAGGAAAGGTCAAGGACACCAAGGAGgtga
gcgacacggaagttgttatgcggaatattttgggtcatcggaccactatt
cattcccaatcgcatcttgtaactcttcgctactttatcacggcttttta
tttcttatgcagAGCGCCAAGCACAAGGCGGAGGAGGCATACGACACAGT
GACAGAGAAGCTAGGAACTACGAAGCAAAGCGCACGAGAGTACCAGAAAG
GCTTAGAAGAGACAGCGAGCGAGACCATGGACGgtaagtgtacgacgagg
aaatgaaattcttcagaagcggaaggtcgggacttgtcgtgtcttggttc
aaggtgtgtttattgatgagtagaaggggggggagggggggggggcaacg
atttctctgatttggcttttgattacttcccactgactcatctctcttaa
tttccaattacagCAGCGGGAGATAACGTGCACCTCAAGCAAAAGgtaat
tgcattgggagcaagttgtgcgtgccccaagtttgtttttgatttggaat
ggaagacaccgtatttgtttgcaacctcagtaccttattctgtccgtcct
tgtttttcgttgcacagGCATCTGAGGCCAAGAGCAAGGCCGCACACACG
CTCGATAACGCCCAAGACGCCGTTCAGGAGGGGATGAAGGACGCAGAGGA
TTATTTGGAAGGAAAGAGCGAGCAGGCCAGTGAGATGGTAAGCCCCCGGT
GGAGGAGAGAGGGAGGGAAGGGGGGTAGGAGGGTAGTGGGAGGGCGAGAG
TATCCTGTATATGCGTCGTTTTGTCTGAAAATTTCCGCTTTGATCAATCG
AGGGGCTTACAACATCGCGTGAAGTAACATCACGACACCGTCTTCTATCC
CAAAATCTTTCATGGAATCCCCTGCCTCGTCGTGCAGGGAGAGGATGTCA
AGGATCGTGCCAGTCGGGCCAAGGAGGAGCTTAAGACGTCCAAGGACAAG
AAGTAGACGAAAGGGCTGAAATGAGAGAGAGAAACGAGGGGAAATAGAAA
GAGCAGACACGAAGGCGAAAAGCGAGGTTGCAGGATAGTCGGTCGATTCA
TGATGCTGAGAAAAGGAAGAACATGTCATCAAACAAGCATTAAAAAAATA
TAGGGGGAGGCGTGCGAGGTAAAAAAGAAGAAAAAAGGGAGAGGGATACA
TGAAGAAAACGTAATCAAACAAGCATGAAAAAAAG
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protein sequence of NO16G01110.1

>NO16G01110.1-protein ID=NO16G01110.1-protein|Name=NO16G01110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=343bp
MDRFLLVARAAKALPVACGGRPTSATARNAMASFTIARSSCAGRVVSSRT
TLMAHRPFFLCSRGVGAGGGREEETLVVQPFAVNALNTPGVRQGCTENRN
IRLSRFVRHFASSSTPPPNPPPGREGDSHKHKTTELYEDAKDKAEHLWED
TKEAASEAKETLADATSVAKEKLQKTSGTVAEKVKDMTQTMKEKAQEAKG
KVKDTKESAKHKAEEAYDTVTEKLGTTKQSAREYQKGLEETASETMDAAG
DNVHLKQKASEAKSKAAHTLDNAQDAVQEGMKDAEDYLEGKSEQASEMVS
PRWRREGGKGGRRVVGGREYPVYASFCLKISALINRGAYNIA*
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protein sequence of NO16G01110.2

>NO16G01110.2-protein ID=NO16G01110.2-protein|Name=NO16G01110.2|organism=Nannochloropsis oceanica|type=polypeptide|length=322bp
MDRFLLVARAAKALPVACGGRPTSATARNAMASFTIARSSCAGRVVSSRT
TLMAHRPFFLCSRGVGAGGGREEETLVVQPFAVNALNTPGVRQGCTENRN
IRLSRFVRHFASSSTPPPNPPPGREGDSHKHKTTELYEDAKDKAEHLWED
TKEAASEAKETLADATSVAKEKLQKTSGTVAEKVKDMTQTMKEKAQEAKG
KVKDTKESAKHKAEEAYDTVTEKLGTTKQSAREYQKGLEETASETMDAAG
DNVHLKQKVIALGASCACPKFVFDLEWKTPYLFATSVPYSVRPCFSLHRH
LRPRARPHTRSITPKTPFRRG*
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Synonyms
Publications