NO16G01110.2, NO16G01110.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G01110.2
Unique NameNO16G01110.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1314
Alignment locationchr16:349317..351201 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:349317..351201 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO16G01110.2 vs.
Match: EWM24022.1 (hypothetical protein Naga_100040g27 [Nannochloropsis gaditana])

HSP 1 Score: 94.4 bits (233), Expect = 7.100e-16
Identity = 87/270 (32.22%), Postives = 133/270 (49.26%), Query Frame = 0 
Query:    1 MDRFLLVARAAKALPVACGGRPTSA--TARNAMASFTIARSSCAGRVVSSRTTLMAHRPFFLCSRGVGAGGGREEETLVVQPFAVNALNTPGVRQG----CTENRNIRLSR-FVRHFASSST--PPPNPP--PGREGDS-------------HKHKTTELYEDAKDKAEHLWEDTKEAASEAKETLADATSVAKEKLQKTSGTVAEKVKDMTQTMKEKAQEAKGKVKDTKESAKHKAEEAYDTVTEKLGTTKQSAREYQKGLEETASETM 247
            M+R   +  A K    ACGG  + A     ++ ASF  +R S   ++       ++H+     +R    GG    +  +   F   ++ TP ++ G      E ++   +R  +RHFASSS+  PPP PP  PG + +              HK K  ELY++ KD+A   W+ TK  ASEAKE + DA   AK+K+++  G V++K  D+ +  KEK    K  ++DT E AK KA EAY+ V++       +A EY++  EE A   M
Sbjct:   47 MERSTFLVHAMKPGVNACGGAKSWACNVGTSSRASFAASRGSNFNQLPP--VAFLSHKSSLTSNREYSRGG----KDTITHAFNCKSVTTP-IKSGNLLWSIEQKHSYAARDLIRHFASSSSSNPPPTPPRYPGPDDEERKKVHEKVESAHEHKSKAGELYDEVKDEAGTAWQGTKNFASEAKEGIVDAAVAAKDKVKEKLGVVSDKAHDIKEAAKEKVTGTKEALEDTTEQAKEKASEAYEKVSD-------TAYEYKERAEEAAEHAM 302
The following BLAST results are available for this feature:
BLAST of NO16G01110.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24022.17.100e-1632.22hypothetical protein Naga_100040g27 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G01110NO16G01110Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G01110.2NO16G01110.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G01110.2.cds1NO16G01110.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G01110.2.cds2NO16G01110.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G01110.2.cds3NO16G01110.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G01110.2.cds4NO16G01110.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G01110.2 ID=NO16G01110.2|Name=NO16G01110.2|organism=Nannochloropsis oceanica|type=mRNA|length=1314bp
ATGGACCGCTTCCTCCTTGTGGCACGTGCGGCCAAGGCCCTGCCTGTGGC
GTGTGGTGGACGCCCTACTTCTGCGACGGCCCGTAACGCCATGGCTTCCT
TTACCATTGCACGTAGCTCTTGTGCTGGTAGAGTCGTCTCATCGCGCACC
ACACTTATGGCTCATCGTCCTTTCTTCCTTTGCAGCCGTGGTGTTGGCGC
GGGAGGTGGGCGTGAGGAGGAAACGCTCGTCGTCCAGCCTTTCGCGGTCA
ACGCCCTCAACACTCCGGGGGTGCGACAAGGGTGCACTGAAAACAGGAAC
ATTCGCCTTTCGCGCTTTGTCCGGCACTTTGCCTCTTCCTCAACCCCCCC
GCCAAACCCGCCGCCAGGACGAGAAGGGGATTCCCACAAGCACAAGACAA
CTGAGCTTTATGAAGACGCCAAGGACAAAGCCGAGCATTTATGGGAGGAT
ACAAAAGAGGCAGCAAGCGAGGCGAAAGAGACACTGGCCGATGCTACATC
CGTTGCTAAAGAGAAACTCCAGAAAACGTCTGGCACGGTAGCGGAGAAAG
TGAAGGATATGACTCAGACTATGAAAGAGAAGGCGCAAGAGGCGAAAGGA
AAGGTCAAGGACACCAAGGAGAGCGCCAAGCACAAGGCGGAGGAGGCATA
CGACACAGTGACAGAGAAGCTAGGAACTACGAAGCAAAGCGCACGAGAGT
ACCAGAAAGGCTTAGAAGAGACAGCGAGCGAGACCATGGACGCAGCGGGA
GATAACGTGCACCTCAAGCAAAAGGTAATTGCATTGGGAGCAAGTTGTGC
GTGCCCCAAGTTTGTTTTTGATTTGGAATGGAAGACACCGTATTTGTTTG
CAACCTCAGTACCTTATTCTGTCCGTCCTTGTTTTTCGTTGCACAGGCAT
CTGAGGCCAAGAGCAAGGCCGCACACACGCTCGATAACGCCCAAGACGCC
GTTCAGGAGGGGATGAAGGACGCAGAGGATTATTTGGAAGGAAAGAGCGA
GCAGGCCAGTGAGATGGGAGAGGATGTCAAGGATCGTGCCAGTCGGGCCA
AGGAGGAGCTTAAGACGTCCAAGGACAAGAAGTAGACGAAAGGGCTGAAA
TGAGAGAGAGAAACGAGGGGAAATAGAAAGAGCAGACACGAAGGCGAAAA
GCGAGGTTGCAGGATAGTCGGTCGATTCATGATGCTGAGAAAAGGAAGAA
CATGTCATCAAACAAGCATTAAAAAAATATAGGGGGAGGCGTGCGAGGTA
AAAAAGAAGAAAAAAGGGAGAGGGATACATGAAGAAAACGTAATCAAACA
AGCATGAAAAAAAG
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protein sequence of NO16G01110.2

>NO16G01110.2-protein ID=NO16G01110.2-protein|Name=NO16G01110.2|organism=Nannochloropsis oceanica|type=polypeptide|length=322bp
MDRFLLVARAAKALPVACGGRPTSATARNAMASFTIARSSCAGRVVSSRT
TLMAHRPFFLCSRGVGAGGGREEETLVVQPFAVNALNTPGVRQGCTENRN
IRLSRFVRHFASSSTPPPNPPPGREGDSHKHKTTELYEDAKDKAEHLWED
TKEAASEAKETLADATSVAKEKLQKTSGTVAEKVKDMTQTMKEKAQEAKG
KVKDTKESAKHKAEEAYDTVTEKLGTTKQSAREYQKGLEETASETMDAAG
DNVHLKQKVIALGASCACPKFVFDLEWKTPYLFATSVPYSVRPCFSLHRH
LRPRARPHTRSITPKTPFRRG*
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mRNA from alignment at chr16:349317..351201+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G01110.2 ID=NO16G01110.2|Name=NO16G01110.2|organism=Nannochloropsis oceanica|type=mRNA|length=1885bp|location=Sequence derived from alignment at chr16:349317..351201+ (Nannochloropsis oceanica)
ATGGACCGCTTCCTCCTTGTGGCACGTGCGGCCAAGGCCCTGCCTGTGGC
GTGTGGTGGACGCCCTACTTCTGCGACGGCCCGTAACGCCATGGCTTCCT
TTACCATTGCACGTAGCTCTTGTGCTGGTAGAGTCGTCTCATCGCGCACC
ACACTTATGGCTCATCGTCCTTTCTTCCTTTGCAGCCGTGGTGTTGGCGC
GGGAGGTGGGCGTGAGGAGGAAACGCTCGTCGTCCAGCCTTTCGCGGTCA
ACGCCCTCAACACTCCGGGGGTGCGACAAGGGTACGTTTGTGTCAGGGAT
CGAGATCCCACAGGTCGTGTGTTCTGATGTGTCGATCGATATTCTGCCAC
CTACAGGTGCACTGAAAACAGGAACATTCGCCTTTCGCGCTTTGTCCGGC
ACTTTGCCTCTTCCTCAACCCCCCCGCCAAACCCGCCGCCAGGACGAGAA
GGGGATTCCCACAAGCACAAGACAACTGAGCTTTATGAAGACGCCAAGGA
CAAAGCCGAGCATTTATGGGAGGATACAAAAGAGGCAGCAAGCGAGGCGA
AAGAGACACTGGCCGATGCTACATCCGTTGCTAAAGAGAAACTCCAGAAA
ACGTCTGGCACGGTAGCGGAGAAAGTGAAGGATATGACTCAGACTATGAA
AGAGAAGGCGCAAGAGGCGAAAGGAAAGGTCAAGGACACCAAGGAGGTGA
GCGACACGGAAGTTGTTATGCGGAATATTTTGGGTCATCGGACCACTATT
CATTCCCAATCGCATCTTGTAACTCTTCGCTACTTTATCACGGCTTTTTA
TTTCTTATGCAGAGCGCCAAGCACAAGGCGGAGGAGGCATACGACACAGT
GACAGAGAAGCTAGGAACTACGAAGCAAAGCGCACGAGAGTACCAGAAAG
GCTTAGAAGAGACAGCGAGCGAGACCATGGACGGTAAGTGTACGACGAGG
AAATGAAATTCTTCAGAAGCGGAAGGTCGGGACTTGTCGTGTCTTGGTTC
AAGGTGTGTTTATTGATGAGTAGAAGGGGGGGGAGGGGGGGGGGGCAACG
ATTTCTCTGATTTGGCTTTTGATTACTTCCCACTGACTCATCTCTCTTAA
TTTCCAATTACAGCAGCGGGAGATAACGTGCACCTCAAGCAAAAGGTAAT
TGCATTGGGAGCAAGTTGTGCGTGCCCCAAGTTTGTTTTTGATTTGGAAT
GGAAGACACCGTATTTGTTTGCAACCTCAGTACCTTATTCTGTCCGTCCT
TGTTTTTCGTTGCACAGGCATCTGAGGCCAAGAGCAAGGCCGCACACACG
CTCGATAACGCCCAAGACGCCGTTCAGGAGGGGATGAAGGACGCAGAGGA
TTATTTGGAAGGAAAGAGCGAGCAGGCCAGTGAGATGGTAAGCCCCCGGT
GGAGGAGAGAGGGAGGGAAGGGGGGTAGGAGGGTAGTGGGAGGGCGAGAG
TATCCTGTATATGCGTCGTTTTGTCTGAAAATTTCCGCTTTGATCAATCG
AGGGGCTTACAACATCGCGTGAAGTAACATCACGACACCGTCTTCTATCC
CAAAATCTTTCATGGAATCCCCTGCCTCGTCGTGCAGGGAGAGGATGTCA
AGGATCGTGCCAGTCGGGCCAAGGAGGAGCTTAAGACGTCCAAGGACAAG
AAGTAGACGAAAGGGCTGAAATGAGAGAGAGAAACGAGGGGAAATAGAAA
GAGCAGACACGAAGGCGAAAAGCGAGGTTGCAGGATAGTCGGTCGATTCA
TGATGCTGAGAAAAGGAAGAACATGTCATCAAACAAGCATTAAAAAAATA
TAGGGGGAGGCGTGCGAGGTAAAAAAGAAGAAAAAAGGGAGAGGGATACA
TGAAGAAAACGTAATCAAACAAGCATGAAAAAAAG
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Coding sequence (CDS) from alignment at chr16:349317..351201+

>NO16G01110.2 ID=NO16G01110.2|Name=NO16G01110.2|organism=Nannochloropsis oceanica|type=CDS|length=966bp|location=Sequence derived from alignment at chr16:349317..351201+ (Nannochloropsis oceanica)
ATGGACCGCTTCCTCCTTGTGGCACGTGCGGCCAAGGCCCTGCCTGTGGC
GTGTGGTGGACGCCCTACTTCTGCGACGGCCCGTAACGCCATGGCTTCCT
TTACCATTGCACGTAGCTCTTGTGCTGGTAGAGTCGTCTCATCGCGCACC
ACACTTATGGCTCATCGTCCTTTCTTCCTTTGCAGCCGTGGTGTTGGCGC
GGGAGGTGGGCGTGAGGAGGAAACGCTCGTCGTCCAGCCTTTCGCGGTCA
ACGCCCTCAACACTCCGGGGGTGCGACAAGGGTGCACTGAAAACAGGAAC
ATTCGCCTTTCGCGCTTTGTCCGGCACTTTGCCTCTTCCTCAACCCCCCC
GCCAAACCCGCCGCCAGGACGAGAAGGGGATTCCCACAAGCACAAGACAA
CTGAGCTTTATGAAGACGCCAAGGACAAAGCCGAGCATTTATGGGAGGAT
ACAAAAGAGGCAGCAAGCGAGGCGAAAGAGACACTGGCCGATGCTACATC
CGTTGCTAAAGAGAAACTCCAGAAAACGTCTGGCACGGTAGCGGAGAAAG
TGAAGGATATGACTCAGACTATGAAAGAGAAGGCGCAAGAGGCGAAAGGA
AAGGTCAAGGACACCAAGGAGAGCGCCAAGCACAAGGCGGAGGAGGCATA
CGACACAGTGACAGAGAAGCTAGGAACTACGAAGCAAAGCGCACGAGAGT
ACCAGAAAGGCTTAGAAGAGACAGCGAGCGAGACCATGGACGCAGCGGGA
GATAACGTGCACCTCAAGCAAAAGGTAATTGCATTGGGAGCAAGTTGTGC
GTGCCCCAAGTTTGTTTTTGATTTGGAATGGAAGACACCGTATTTGTTTG
CAACCTCAGTACCTTATTCTGTCCGTCCTTGTTTTTCGTTGCACAGGCAT
CTGAGGCCAAGAGCAAGGCCGCACACACGCTCGATAACGCCCAAGACGCC
GTTCAGGAGGGGATGA
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Synonyms
Publications