NO16G00410, NO16G00410 (gene) Nannochloropsis oceanica

Overview
NameNO16G00410
Unique NameNO16G00410
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2287
Alignment locationchr16:152022..154308 +

Link to JBrowse

Properties
Property NameValue
DescriptionPeroxin-14
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:152022..154308 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: Cellular Component
TermDefinition
GO:0005778peroxisomal membrane
GO:0016021integral component of membrane
GO:0016020membrane
GO:0005778peroxisomal membrane
Vocabulary: Biological Process
TermDefinition
GO:0016560protein import into peroxisome matrix, docking
GO:0016560protein import into peroxisome matrix, docking
Vocabulary: INTERPRO
TermDefinition
IPR036339PUB-like_dom_sf
IPR025655PEX14
IPR018997PUB_domain
IPR006785Pex14_N
Homology
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BLAST of NO16G00410 vs. NCBI_GenBank
Match: XP_005856055.1 (peroxin-14, partial [Nannochloropsis gaditana CCMP526] >EKU20302.1 peroxin-14, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 122.5 bits (306), Expect = 5.500e-24
Identity = 152/291 (52.23%), Postives = 182/291 (62.54%), Query Frame = 0 
Query:    1 MDNNDPPSPSPT-PGST---REDFILNGVSFLQHPKVQQAPLSQRITFLEKKGLTQGEIAEALTRVKGAQAGSEPDQPYGSRNS-----XXXXXXXXXXXXXXXXXXXXXXXXXXXXIGMWGQGSGFMLPGAVVAGLALGAGVTHLYRMRDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDGIGQAEEG--MRVRFEDAGGIYXXXXXXXXXXXXXXXXXXXXXXXDATPV-SSSSFHELAKAIESQAEALSALAQASEKSRLDFHSLLTGHVASHTADIRAELSSIKQ 280
            MD++  P+ S   P  T   REDFI NGVSFL+HP VQQAPLSQRITFLEKKGLTQ EI EA TR K    G E   P+ S ++     XXXXXXXXXXXXXXXXXXXXXXX     +GMW QG G+ +PGAVVAGLA+GAG+TH      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX         G    VRF+++                           DA  +  +SS   +A+AI             SE++R DFHSLL+GH+AS + ++R+EL+++KQ
Sbjct:    1 MDSDSMPATSAAKPSGTTPLREDFITNGVSFLRHPNVQQAPLSQRITFLEKKGLTQEEITEAFTRAKN---GLESSLPFHSSSTPANXXXXXXXXXXXXXXXXXXXXXXXXXSPPEPVGMWNQGFGYTVPGAVVAGLAIGAGITHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDVRAVRFQES--------------------EYLVARGDAHSLPPASSLQAIAEAIXXXXXXXXXXXXXSERNRQDFHSLLSGHLASQSTELRSELTTLKQ 268
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BLAST of NO16G00410 vs. NCBI_GenBank
Match: EWM24084.1 (peroxin pex14 [Nannochloropsis gaditana])

HSP 1 Score: 116.7 bits (291), Expect = 3.000e-22
Identity = 96/148 (64.86%), Postives = 108/148 (72.97%), Query Frame = 0 
Query:    1 MDNNDPPSPSPT-PGST---REDFILNGVSFLQHPKVQQAPLSQRITFLEKKGLTQGEIAEALTRVKGAQAGSEPDQPYGSRNS-----XXXXXXXXXXXXXXXXXXXXXXXXXXXXIGMWGQGSGFMLPGAVVAGLALGAGVTHLYR 140
            MD++  P+ S   P  T   REDFI NGVSFL+HP VQQAPLSQRITFLEKKGLTQ EI EA TR K    G E   P+ S ++     XXXXXXXXXXXXXXXXXXXXXXX     +GMW QG G+ +PGAVVAGLA+GAG+THLYR
Sbjct:    1 MDSDSMPATSAAKPSGTTPLREDFITNGVSFLRHPNVQQAPLSQRITFLEKKGLTQEEITEAFTRAKN---GLESSLPFHSSSTPANXXXXXXXXXXXXXXXXXXXXXXXXXSPPEPVGMWNQGFGYTVPGAVVAGLAIGAGITHLYR 145
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BLAST of NO16G00410 vs. NCBI_GenBank
Match: EWM24083.1 (hypothetical protein Naga_101316g1 [Nannochloropsis gaditana])

HSP 1 Score: 73.6 bits (179), Expect = 2.900e-9
Identity = 42/70 (60.00%), Postives = 48/70 (68.57%), Query Frame = 0 
Query:  650 YPQSFREIMEMTERGETPAGIAQVESRLSQDVEREGGPKPLSSLSSVSVPKKKPWEVAAVEEEEERGGRK 720
            YPQSFREI+EMTERGETP GI  V+SRLSQDV   G     +S   +S P KKPWE  A +EE  RGG +
Sbjct:  140 YPQSFREILEMTERGETPPGIVTVDSRLSQDVGELGTLSVPASAEGMSTPPKKPWE--AEKEEVGRGGEE 207
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BLAST of NO16G00410 vs. NCBI_GenBank
Match: GBG27382.1 (Peroxisomal membrane protein PEX14 [Aurantiochytrium sp. FCC1311])

HSP 1 Score: 67.4 bits (163), Expect = 2.100e-7
Identity = 35/63 (55.56%), Postives = 44/63 (69.84%), Query Frame = 0 
Query:   17 REDFILNGVSFLQHPKVQQAPLSQRITFLEKKGLTQGEIAEALTRVK------GAQAGSEPDQ 74
            RED + NGVSFL HPKVQQAPL +R+TFL  KGLT+ EI EA+ R +      G ++G+  DQ
Sbjct:    2 REDQVSNGVSFLTHPKVQQAPLEERLTFLRNKGLTEEEIEEAVRRSENPDGESGEKSGAAADQ 64
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BLAST of NO16G00410 vs. NCBI_GenBank
Match: CBJ27246.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 67.0 bits (162), Expect = 2.700e-7
Identity = 32/50 (64.00%), Postives = 40/50 (80.00%), Query Frame = 0 
Query:   17 REDFILNGVSFLQHPKVQQAPLSQRITFLEKKGLTQGEIAEALTRVKGAQ 67
            RED I+NGV+FL HPK + APLSQRI+FLE KGLT  EI+ AL+R +G +
Sbjct:    2 REDQIVNGVNFLVHPKAKTAPLSQRISFLENKGLTAEEISAALSRAEGGE 51
The following BLAST results are available for this feature:
BLAST of NO16G00410 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 5
Match NameE-valueIdentityDescription
XP_005856055.15.500e-2452.23peroxin-14, partial [Nannochloropsis gaditana CCMP... [more]
EWM24084.13.000e-2264.86peroxin pex14 [Nannochloropsis gaditana][more]
EWM24083.12.900e-960.00hypothetical protein Naga_101316g1 [Nannochloropsi... [more]
GBG27382.12.100e-755.56Peroxisomal membrane protein PEX14 [Aurantiochytri... [more]
CBJ27246.12.700e-764.00conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR018ncniR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR031ngnoR031Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO16G00410.1NO16G00410.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_101551g1gene6385Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO16G00410.1NO16G00410.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO16G00410 ID=NO16G00410|Name=NO16G00410|organism=Nannochloropsis oceanica|type=gene|length=2287bp
ATGGACAACAATGACCCTCCTTCTCCTTCCCCCACTCCGGGAAGCACCCG
CGAGGACTTCATCTTGAATGGGGTCTCCTTTCTGCAGCACCCTAAGGTCC
AACAAGCCCCGCTTTCTCAACGCATCACCTTCCTGGAGAAGAAAGGGTTG
ACACAAGGGGAGATTGCCGAGGCCTTAACCCGCGTCAAAGGGGCACAAGC
AGGCAGCGAACCCGATCAGCCCTACGGCAGTAGAAACAGCGGCAACAGTA
ACAGCAGCAACCTCACTTCTCCCCCCCCGCCGCCACCCTACGCCATGATG
GAAGCGTCACCACCGCCACCACCGATAGGCATGTGGGGACAAGGGTCGGG
GTTCATGCTTCCAGGGGCAGTGGTGGCAGGCTTGGCGTTGGGGGCAGGAG
TTACGCATTTGTACCGTATGCGGGATCACCATAGAATGATGCAGCAGCAG
CAACAACAGCAGCGGCAAAGGGAAGAAGAGGAGGAAGAGATTCGTCGACG
GCAACAACAGGAACAGCTTGATGGAATTGGACAGGCAGAGGAAGGAATGC
GTGTACGCTTCGAAGACGCTGGGGGCATTTACGACCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGGAGGCTCACCCTTTTTCCTCAACAACTCA
AGACGCCACCCCTGTTTCTTCCTCCTCCTTCCACGAGCTCGCCAAGGCCA
TTGAATCCCAAGCAGAAGCCCTGTCCGCCTTGGCACAAGCCTCGGAAAAG
AGCCGGTTGGACTTCCACTCCCTGCTTACGGGGCATGTTGCCTCCCACAC
CGCAGACATTCGTGCCGAGCTTTCCTCCATCAAGCAGATGCTGCTCCTCA
CAGCTGGAGGAGGGTTGATGGCCAATGCGTCCTCTTCGTCCTCGTCCTCG
TCGGCGGCAGTGGCTCGCATCGCGCTCGAAGGGCCAAAGGTGCCGCAGCT
CATGATCCAAGAGCAGCAGCAGCAGCAGCTGAGGGAGGAGGAATGGAAGG
AAAGGGAGTGCAGCTTGTCGTCTCCCTCACCGGTGCCATCCAATGTGGAG
GAAGAGGAAGGGAGGGAGCGACAGGAAGGCGGGGATACGGGAGGGGAGGG
AGGCGCTTCTTCTAACACCACAGGGGATGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCCACCGCCGCCCAACAACTGCAACAAGAGCAAGAAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCTGCTGCCACTGGACAACGACGATTGCA
CCGGCATCGCGTCAAGCAGCTGACCCGCTCCCTCAAATCCCTCCTCGCCC
TCAACCAGGCCCTCCCCCCCTCCCTCCTCCAGGATGCAGTCGAGATGCTG
CTAGTGTACGCCAACAACTTGATCAAATACCCCACCGTGCCTCGGTTTCG
GAAGATTGCGTTGGTTAACCAAGGATATCGAGAAAGGGTGAGTGGGGTCA
GGGGCCACGAAGACTTTTTGAAAGCTCTCGGGTACGTGGAGGGAACGACG
TGCTTTGAGTGGGAGGGAGGGAGGGAGGGGGGGAAGGAGGGGGGGCTGGA
GATGTTGAAGGTGGCGGTTGGGATGTTAACGAGTGTGAAAAATGGGGACG
AGCCCATCGCATGGCCCGCGCTACCGCCCTTGGAGGAGGGGGAGGAGGAA
GAGGAGGAGCCGGCGGAGAGAGGGAAGGAAGAAGGGAATGAGGATGAAGA
GGAGAAGGAGAACGCGGAGAAGGAGAGAATGATTCGAGCGTTGCTGCGAA
AGAGGGAGGAGGCGCGGGTGGCGAGAGAACGAGGAGGAGAGGAGGAAAAG
GAAGGGAGGAAGGAATCCAAAGAAGAGACGGCTCCTTCCTCTTCCTCGTC
TTCCGCCCCCATCTCTCCGTCTTCGCAAAAGGCATACGAGAGGGAGGAGG
GAAATGTAGATTCTCCACCTTCTTCTACTTCTCTTCCACCACCACAGTAC
CCACAGTCATTTCGTGAGATCATGGAGATGACAGAGAGGGGGGAAACGCC
CGCGGGGATCGCACAGGTGGAAAGTCGGCTGTCGCAGGACGTGGAGCGGG
AAGGAGGGCCCAAGCCCCTTTCCTCCTTGTCGAGTGTATCAGTCCCCAAG
AAGAAGCCGTGGGAGGTGGCGGCGGTGGAGGAAGAGGAGGAGCGGGGGGG
AAGGAAAGAGTGGGAGAGGTGATAAAGAAAGAGGCGGGAGAAAGAGGGAA
GAGAGAAGGGGATGTTAAAAAGGAACTCGTGGCGAAGTAGGCAAAGAGGG
TGAATTACAAAGTAAACAAGGAAATGGGAACGATTAT
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protein sequence of NO16G00410.1

>NO16G00410.1-protein ID=NO16G00410.1-protein|Name=NO16G00410.1|organism=Nannochloropsis oceanica|type=polypeptide|length=724bp
MDNNDPPSPSPTPGSTREDFILNGVSFLQHPKVQQAPLSQRITFLEKKGL
TQGEIAEALTRVKGAQAGSEPDQPYGSRNSGNSNSSNLTSPPPPPPYAMM
EASPPPPPIGMWGQGSGFMLPGAVVAGLALGAGVTHLYRMRDHHRMMQQQ
QQQQRQREEEEEEIRRRQQQEQLDGIGQAEEGMRVRFEDAGGIYDQQQQQ
QQQQQQQEAHPFSSTTQDATPVSSSSFHELAKAIESQAEALSALAQASEK
SRLDFHSLLTGHVASHTADIRAELSSIKQMLLLTAGGGLMANASSSSSSS
SAAVARIALEGPKVPQLMIQEQQQQQLREEEWKERECSLSSPSPVPSNVE
EEEGRERQEGGDTGGEGGASSNTTGDAAAAAAAAAAATAAQQLQQEQEAA
AAAAAAAAAATGQRRLHRHRVKQLTRSLKSLLALNQALPPSLLQDAVEML
LVYANNLIKYPTVPRFRKIALVNQGYRERVSGVRGHEDFLKALGYVEGTT
CFEWEGGREGGKEGGLEMLKVAVGMLTSVKNGDEPIAWPALPPLEEGEEE
EEEPAERGKEEGNEDEEEKENAEKERMIRALLRKREEARVARERGGEEEK
EGRKESKEETAPSSSSSSAPISPSSQKAYEREEGNVDSPPSSTSLPPPQY
PQSFREIMEMTERGETPAGIAQVESRLSQDVEREGGPKPLSSLSSVSVPK
KKPWEVAAVEEEEERGGRKEWER*
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Synonyms
Publications