NO15G02850, NO15G02850 (gene) Nannochloropsis oceanica

Overview
NameNO15G02850
Unique NameNO15G02850
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2177
Alignment locationchr15:777456..779632 +

Link to JBrowse

Properties
Property NameValue
DescriptionTrna pseudouridine synthase pus10
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:777456..779632 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0001522pseudouridine synthesis
GO:0009451RNA modification
GO:0009451RNA modification
GO:0001522pseudouridine synthesis
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0009982pseudouridine synthase activity
GO:0009982pseudouridine synthase activity
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR020103PsdUridine_synth_cat_dom
Homology
BLAST of NO15G02850 vs. NCBI_GenBank
Match: EWM22347.1 (trna pseudouridine synthase pus10 [Nannochloropsis gaditana])

HSP 1 Score: 538.5 bits (1386), Expect = 2.800e-149
Identity = 325/610 (53.28%), Postives = 402/610 (65.90%), Query Frame = 0
Query:   16 PVELLPSL-RPNGDHW-LPAFQRLYPKLECLRCSLRVAGVWQRHVFLASEKRLRATLAPVLG-DLTLATARPDAAVCPLCLGLLQDPDLMKDTPLMSSVVEAIVLQIKKKGYVLPEAVESSGTISNKET------------------KLGFILGLTLPASLAIRDRAALHWLEASVNL-FYCRSGGPVEVKDILKFAIEEHLQQYLPCFATAPSPPSPGTFKLDLSFFKPSVDADDYRH-ICSIMPRTYLEGKAYRRTRKRKKHAGTNLENLCTSTMVGHVVGVAAGDGEVRKKMADWFECLSEGNFIDHTDEHQKKEAA--SPAVTTVSVTREAFYLKGKYLKFSREMPQTLWLLEGGVRKGKASVEEVISEPVREWCEPESVVLMGSGREDMDVRMLGHGRPFLLQVNDPRRVPKEEGGQEEVAALQAAINAKMGLNREGDVVVRELSVSDRRQVKIMHAGAAEKQKVYACRVWVGGKVGREELSKCLESKRDLAVEQMTPIRVLHRRALLTRRKDIYEMRCEDVKVVEKEGEXXXXXXXXXXXXXXXXXXXXXXXALGTYFTLHLRTAAGTYIKEFVHGDMGRTRPNVGSLLGGLSADLLALDVTGV 601
            PV   PSL  P+ D W LPAF  LYPK+ C+RCSLR+AGV    +  A E++LRATL    G +++ AT R    +CPLCLG+LQ      D  L S++++AI+ QIK K YVLP   +S     +K T                  K+ FILG++LP S+AIRDRAAL W+        +   G  ++VK+ILK  +E  L ++ PC   A S PSPG  ++DLSF+    D  DY   +  ++P     GKA+ RTRKR++H  +N ENLC +T+V  V+  A GD  VR  +A +F      N +  +       AA  +PA ++V VTREA +L G+YLK SREMPQTLW++EGG RKGKASVEEV++EPV +W    S VL+GSGREDMDVRMLG GRPFLL+VNDPRR+P    G+EEVA L+AAIN   GLN  GDV V  L +SD+ +VK MHAGA EK K+Y+CRVWVGG+V R  L+  LE  ++L V Q TPIRVLHRRALLTR K I+EMRC DVKVVE  GE              XXXXXXXXXA+GTYFTLHLRT+AGTYIKEFVHGDMGRTRP+VG LLGGL ADLLALDVTG+
Sbjct:    2 PVSPPPSLPLPDEDTWSLPAFSLLYPKINCIRCSLRLAGVCDAEILRAPERQLRATLCSAQGAEISHATCR----MCPLCLGILQSSG---DRELGSALLDAILAQIKTKKYVLPTGGDSPDMTQHKSTTDPVGEMVAEHSKYLLERKVPFILGVSLPGSVAIRDRAALEWVACEQQTGRHQDPGRRLDVKEILKAVLESCLPKHYPCLYAA-STPSPGALRVDLSFWHAGADEADYHQGVRILLPNA--TGKAFNRTRKRRRHEESNQENLCNATVVARVLQAATGDPNVRSGLAVFF----ARNLMPPSTHSPTAYAALETPAASSVQVTREAIFLAGRYLKLSREMPQTLWVVEGGRRKGKASVEEVVAEPVLDWTSATSAVLIGSGREDMDVRMLGTGRPFLLRVNDPRRIP----GREEVAGLEAAINQTTGLNSGGDVRVHGLRLSDKHEVKAMHAGATEKVKMYSCRVWVGGRVDRALLATSLEGSKELVVAQKTPIRVLHRRALLTRPKVIHEMRCTDVKVVE-GGE--------------XXXXXXXXXAVGTYFTLHLRTSAGTYIKEFVHGDMGRTRPSVGDLLGGLEADLLALDVTGI 578          
BLAST of NO15G02850 vs. NCBI_GenBank
Match: XP_019449496.1 (PREDICTED: putative tRNA pseudouridine synthase Pus10 [Lupinus angustifolius] >XP_019449497.1 PREDICTED: putative tRNA pseudouridine synthase Pus10 [Lupinus angustifolius])

HSP 1 Score: 204.9 bits (520), Expect = 7.300e-49
Identity = 177/568 (31.16%), Postives = 255/568 (44.89%), Query Frame = 0
Query:   43 CLRCSLRVAGVWQRHVFLASEKRLRATLAPVLGDLTLATARPDAAVCPLCLGLLQ-----DPDLMKDTPLMSSVVEAIVLQIKKKGYVLPEAVESSGTISNKETKLGFILGLTLPASLAIRDRAALHWLEA---SVNLFYCR-SGGPVEVKDILKFAIEEHLQQYLPCFATAPSPPSPGTFKLDLSFFKPSVDADDYRHICSIMPRTYLEGKAYRRTRKRKKHAGTNLENLCTSTMVGHVVGVAAGDGEVRKKMADWFECLSEGNFIDHTDEHQKKEAASPAVTTVSVTREAFYLKGKYLKFSREMPQTLWLLEGGVRKGKASVEEVISEPVREWCEPESVVLMGSGREDMDVRMLGHGRPFLLQVNDPRRVPKEEGGQEEVAALQAAINAKMGLNREGDVV-VRELSVSDRRQVKIMHAGAAEKQKVYACRVWVGGKVGREELSKCLESKRDLAVEQMTPIRVLHRRALLTRRKDIYEMRCEDVKVVEKEGEXXXXXXXXXXXXXXXXXXXXXXXALGTYFTLHLRTAAGTYIKEFVHGDMGRTRPNVGSLLGGLSADLLALDVTGV 601
            C+RC  RV GV  R    AS       L   L     +T   +  VC LCLG+LQ     + +L+     +  +   I   +KK+GY +                 GF   +++P  L   D +   ++++   S   F  +     +  KD LKF++   L+  L C +   S      F++ L+          Y H   +           R   KR+K   +NL            VG       +  + +DW E L E              A  P   T    RE +Y  G+YLK+SR + QT W+++   R G+ASVEE+I   + + C  +S     +GRED+DVRMLG GRPFL++V + R +P E   ++    ++  IN     N E  +V VR L++       +M  G AEKQK YA  VW+   +  E+L   + S +DL V Q TPIRVLHRR+ L R K I+ M+ E +                                   YF LHL T AGTYIKEFVHGD+GRT+P++GS+L G  A++L LDVT +
Sbjct:   59 CVRCIFRVFGV--RGCIYASPDLAVNNLKDNLNSSENSTTAKETKVCRLCLGILQFRFVDEKELVVKKDSVDDMAVLIAEIVKKEGYQVD----------------GFSFEVSVPPILLENDNSFWSYMKSKFGSEPWFQEKLHTERISTKDALKFSLVSPLENLLDCKSNMSS------FRIRLT----------YNHTKGLNGTEKCSDNDER--SKRRKTGESNL------------VGEKPFSSSLENESSDWSESLLE-------------MANEPCHFTCFCYREPYYFGGRYLKYSRNVSQTRWIID-DERMGEASVEEIIGGNILQACRGDSFKFHAAGREDIDVRMLGPGRPFLVEVQNARLLPSELFAKD----IENLIN-----NVENKLVRVRNLNLVGSHGWNLMREGEAEKQKQYAALVWISRPLKDEDLQH-ISSLKDLKVLQRTPIRVLHRRSPLEREKIIHWMKVETI------------------------------AGSSQYFLLHLCTQAGTYIKEFVHGDLGRTQPSIGSIL-GCRAEILQLDVTDI 523          
BLAST of NO15G02850 vs. NCBI_GenBank
Match: XP_008377102.1 (PREDICTED: putative tRNA pseudouridine synthase Pus10 [Malus domestica])

HSP 1 Score: 204.5 bits (519), Expect = 9.500e-49
Identity = 173/577 (29.98%), Postives = 269/577 (46.62%), Query Frame = 0
Query:   43 CLRCSLRVAGVWQRHVFLASEKRLRATLAPVLGD----LTLATARPDAAVCPLCLGLLQ-----DPDLMKDTPLMSSVVEAIVLQIKKKGYVLPEAVESSGTISNKETKLGFILGLTLPASLAIRDRAALHWLEASVNLFYCRSGGP----VEVKDILKFAIEEHLQQYLPCFATAPSPPSPGTFKLDLSFFKPSVDADDYRHICSIMPRTYLEGKAYRRTRKRKKHAGTNLENL-----CTSTMVGHVVGVAAGDGEVRKKMADWFECLSEGNFIDHTDEHQKKEAASPAVTTVSVTREAFYLKGKYLKFSREMPQTLWLLEGGVRKGKASVEEVISEPVREWCEPESVVLMGSGREDMDVRMLGHGRPFLLQVNDPRRVPKEEGGQEEVAALQAAINAKMGLNREGDVV-VRELSVSDRRQVKIMHAGAAEKQKVYACRVWVGGKVGREELSKCLESKRDLAVEQMTPIRVLHRRALLTRRKDIYEMRCEDVKVVEKEGEXXXXXXXXXXXXXXXXXXXXXXXALGTYFTLHLRTAAGTYIKEFVHGDMGRTRPNVGSLLGGLSADLLALDVTGV 601
            C RC LR+ G+ +   + +S    R+ L+ VLGD    L  +  R +  VC +CLG+LQ     D  L+ +    S +  +I   I+++G+ +                 GF L +++P  +   DR A  +++          G      +  KD LK ++ E L+  L C ++  S      F++ L++            I +I   +  EG      ++RK  +G  L+ +     C+         V      V  +  +  ECL          +   ++++ P        R   Y+ G+YLK+SR + Q+ W+++   R G+ASVEE++   V   C  ++     +GRED+DVRMLG GRPFLL++ + R VP +    + V +L+ AIN     N E  +V V+ L + D +   +M  G AEKQK Y   VW+   +  E+L   + S +D  ++Q TPIRVLHRR+ L R K I+ MR E +                                   YF LHL T AGTYIKEFVHGD+GRT+P++GS+     A++L LDVT V
Sbjct:   42 CTRCILRLFGIREHDYYRSSLS--RSILSSVLGDSEKHLVDSNVR-EPVVCRVCLGILQFTYSADNKLVVERESASELAVSISDLIRQQGFQID----------------GFSLEVSIPPIIQENDRIAWLYMKRKFESELWFQGKSLSECISAKDALKISLTEILETMLGCKSSISS------FRIRLTY---------THRIATITVDSSNEG-----CKRRKTGSGNGLDRINDDIKCSGFSTSEADAVVQ-RSFVSLQAIESPECL----------KLPLEQSSEPCCLEFLCYRTQIYVGGRYLKYSRNVSQSCWIID-DERMGEASVEEILGSNVLPICRGDNYKFHAAGREDIDVRMLGSGRPFLLEIQNARLVPSD----DSVKSLEIAIN-----NLENKLVGVKNLKLVDSQSWDLMREGEAEKQKQYVALVWISRPLKDEDL-HFISSLKDTHIQQSTPIRVLHRRSPLEREKIIHWMRIEKI------------------------------VGSSQYFLLHLCTQAGTYIKEFVHGDLGRTQPSIGSIF-SCRAEILQLDVTDV 526          
BLAST of NO15G02850 vs. NCBI_GenBank
Match: XP_013703655.1 (putative tRNA pseudouridine synthase Pus10 isoform X1 [Brassica napus])

HSP 1 Score: 201.4 bits (511), Expect = 8.000e-48
Identity = 164/563 (29.13%), Postives = 257/563 (45.65%), Query Frame = 0
Query:   43 CLRCSLR---VAGVWQRHVFLASEKRLRATLAPVLGDLTLATARPDAAVCPLCLGLLQDP-DLMKDTPLMSSVVEAIVLQIKKKGYVLPEAVESSGTISNKETKLGFILGLTLPASLAIRDRAALHWLEASVNLFYCRSGGPVEVKDILKFAIEEHLQQYLPCFATAPSPPSPGTFKLDLSFFKPSVDADDYRHICSIMPRTYLEGKAYRRTRKRKKHAGTNLENLCT-STMVGHVVGVAAGDGEVRKKMADWFECLSEGNFIDHTDEHQKKEAASPAVTTVSVTREAFYLKGKYLKFSREMPQTLWLLEGGVRKGKASVEEVISEPVREWCEPESVVLMGSGREDMDVRMLGHGRPFLLQVNDPRRVPKEEGGQEEVAALQAAINAKMGLNREGDVVVRELSVSDRRQVKIMHAGAAEKQKVYACRVWVGGKVGREELSKCLESKRDLAVEQMTPIRVLHRRALLTRRKDIYEMRCEDVKVVEKEGEXXXXXXXXXXXXXXXXXXXXXXXALGTYFTLHLRTAAGTYIKEFVHGDMGRTRPNVGSLLGGLSADLLALDVTGV 601
            C RC LR   V   +   +   S   LR      LG      A P+ ++C +CLG+LQ      K T + S  V  I   +K++G+                    F+L ++LP++++  +RA L +L+   +         V VKD LK  + +      P  A+  +     +F + L++ + S +A                 +    T+  +K   T++  L   S+ + HV      +G           C+SE  F         K+ + P + +V   +   +  G+Y K+SR + Q+ W+++   R G+ASVEE+I   +   C  +S     +GRED+DVRMLG GRPFL++V + R+ P ++   E        I  K+  + +  V V++L         +M  G AEKQK YA  VW+   +  E+ +  + S ++L + Q TPIRVLHRR+ L R + I+ M+ E +K                                  YF LHL T AGTYIKEFVHGD+GRT P++GS+L G  A+++ LDVT V
Sbjct:   34 CERCILRLVTVTATFDSDLATVSSSTLRGW----LGSGVEEAASPEPSICIVCLGVLQFVFSDAKQTLVKSDHVAWITDLVKQQGHEFD----------------SFVLEVSLPSTISENERAVLLYLKGKYSDEAWLQSEKVSVKDALKVLVLD------PLRASLGAKSDSSSFHIRLTYSQASDEA-----------------QGLSETKHERKKRKTDIPTLADFSSAIFHVFYADEENGS---------NCMSENPF---------KKVSEPCILSVHCNKMPIFFGGRYFKYSRNVSQSRWIID-DERMGEASVEEIIGGSILPACLGDSYKFHAAGREDIDVRMLGSGRPFLIEVQNSRKCPSQQSLTE--------IEEKINNSEKKLVGVKDLKFIGSECWAMMREGEAEKQKQYAALVWISRPLEEEDCNS-VSSMKELKILQKTPIRVLHRRSQLERERTIHWMKVEKIK------------------------------GNAHYFLLHLCTQAGTYIKEFVHGDLGRTTPSMGSIL-GCRAEIIQLDVTDV 494          
BLAST of NO15G02850 vs. NCBI_GenBank
Match: XP_007017946.2 (PREDICTED: putative tRNA pseudouridine synthase Pus10 [Theobroma cacao])

HSP 1 Score: 201.4 bits (511), Expect = 8.000e-48
Identity = 171/573 (29.84%), Postives = 262/573 (45.72%), Query Frame = 0
Query:   43 CLRCSLRVAGVWQRHVFLASEKRLRATLAPVLGDLTLATARPDAAVCPLCLGLLQDP--DLMKDTPLMSSVVEAIVLQIKKKGYVLPEAVESSGTISNKETKLGFILGLTLPASLAIRDRAALH----------WLEASVNLFYCRSGGPVEVKDILKFAIEEHLQQYLPCFATAPSPPSPGTFKLDLSFFKPSVDADDYRHICSIMPRTYLEGKAYRRTRKRKKHAGTNLENLCTSTMVGHVVGVAAGDGEVRKKMADWFECLSEGNFIDHTDEHQK---KEAASPAVTTVSVTREAFYLKGKYLKFSREMPQTLWLLEGGVRKGKASVEEVISEPVREWCEPESVVLMGSGREDMDVRMLGHGRPFLLQVNDPRRVPKEEGGQEEVAALQAAINAKMGLNREGDVVVRELSVSDRRQVKIMHAGAAEKQKVYACRVWVGGKVGREELSKCLESKRDLAVEQMTPIRVLHRRALLTRRKDIYEMRCEDVKVVEKEGEXXXXXXXXXXXXXXXXXXXXXXXALGTYFTLHLRTAAGTYIKEFVHGDMGRTRPNVGSLLGGLSADLLALDVTGV 601
            C RC LR+ G+ + H++  S    ++ L  +L + T   +  +   C +CLG+LQ    D  ++T +     + + L I        E V+  G   +     GF L +++P  +   + + L           W +  + L  C S     VKD+LKFAI + L+  L   A+A S      F++ L++                     ++    R    +++  GT  EN   +     V+      G    +        S G     T EH +   ++ + P        R   YL G+YLK+SR + QT W+++   R G+ASVEE+I   +   C+ ++     +GRED+DVRMLG GRPFLL++ + R+VP E   +E  + +    N  +G        V+ L V   +   +MH G AEKQK Y   VW+   +  E++ + +    D+ + Q TPIRVLHRR+ L R K I+ M+ E +                                   YF LHL T AGTYIKEFVHGD+GRT+P+VGS+L G  A++L LDVT V
Sbjct:   50 CARCVLRLFGI-EEHIYCHSSFS-QSMLGSILEEETSFKSEVEFQFCSVCLGVLQFSYCDDGEETVVKKESAKDMALSI-------AELVKQEGHQID-----GFSLEVSVPPLILENESSLLSHMKKKYESEPWFQERLLLSKCHS-----VKDVLKFAITKPLETLLGVKASASS------FRIRLTYTHKRASKK-------------VQNSVERNQECKRRKTGT--ENALHNVNDESVIADKDCSGYSTIETNSVTGIFSNGVQDQETSEHFESPIEKVSEPCHLVYVCCRTHIYLCGRYLKYSRNVSQTRWIID-EERMGEASVEEIIGSNILPICQGDNYKFHAAGREDIDVRMLGSGRPFLLEIQNARQVPSELIVKEMESKINGLENKLVG--------VKNLKVVGSQGWALMHEGEAEKQKQYCALVWISRPLEDEDM-QTISLLNDMKILQRTPIRVLHRRSPLEREKIIHWMKIERI------------------------------AGSSQYFLLHLCTQAGTYIKEFVHGDLGRTQPSVGSIL-GCRAEILQLDVTDV 541          
BLAST of NO15G02850 vs. NCBI_GenBank
Match: OIW07930.1 (hypothetical protein TanjilG_20031 [Lupinus angustifolius])

HSP 1 Score: 201.1 bits (510), Expect = 1.000e-47
Identity = 174/568 (30.63%), Postives = 252/568 (44.37%), Query Frame = 0
Query:   43 CLRCSLRVAGVWQRHVFLASEKRLRATLAPVLGDLTLATARPDAAVCPLCLGLLQ-----DPDLMKDTPLMSSVVEAIVLQIKKKGYVLPEAVESSGTISNKETKLGFILGLTLPASLAIRDRAALHWLEA---SVNLFYCR-SGGPVEVKDILKFAIEEHLQQYLPCFATAPSPPSPGTFKLDLSFFKPSVDADDYRHICSIMPRTYLEGKAYRRTRKRKKHAGTNLENLCTSTMVGHVVGVAAGDGEVRKKMADWFECLSEGNFIDHTDEHQKKEAASPAVTTVSVTREAFYLKGKYLKFSREMPQTLWLLEGGVRKGKASVEEVISEPVREWCEPESVVLMGSGREDMDVRMLGHGRPFLLQVNDPRRVPKEEGGQEEVAALQAAINAKMGLNREGDVV-VRELSVSDRRQVKIMHAGAAEKQKVYACRVWVGGKVGREELSKCLESKRDLAVEQMTPIRVLHRRALLTRRKDIYEMRCEDVKVVEKEGEXXXXXXXXXXXXXXXXXXXXXXXALGTYFTLHLRTAAGTYIKEFVHGDMGRTRPNVGSLLGGLSADLLALDVTGV 601
            C+RC  RV GV  R    AS       L   L     +T   +  VC LCLG+LQ     + +L+     +  +   I   +KK+GY +                 GF   +++P  L   D +   ++++   S   F  +     +  KD LKF++   L+  L C             K ++S F+              +  TY   K    T K   +               ++VG       +  + +DW E L E              A  P   T    RE +Y  G+YLK+SR + QT W+++   R G+ASVEE+I   + + C  +S     +GRED+DVRMLG GRPFL++V + R +P E   ++    ++  IN     N E  +V VR L++       +M  G AEKQK YA  VW+   +  E+L   + S +DL V Q TPIRVLHRR+ L R K I+ M+ E +                                   YF LHL T AGTYIKEFVHGD+GRT+P++GS+L G  A++L LDVT +
Sbjct:   59 CVRCIFRVFGV--RGCIYASPDLAVNNLKDNLNSSENSTTAKETKVCRLCLGILQFRFVDEKELVVKKDSVDDMAVLIAEIVKKEGYQVD----------------GFSFEVSVPPILLENDNSFWSYMKSKFGSEPWFQEKLHTERISTKDALKFSLVSPLENLLDC-------------KSNMSSFR--------------IRLTYNHTKGLNGTEKCSDN----------DERESNLVGEKPFSSSLENESSDWSESLLE-------------MANEPCHFTCFCYREPYYFGGRYLKYSRNVSQTRWIID-DERMGEASVEEIIGGNILQACRGDSFKFHAAGREDIDVRMLGPGRPFLVEVQNARLLPSELFAKD----IENLIN-----NVENKLVRVRNLNLVGSHGWNLMREGEAEKQKQYAALVWISRPLKDEDLQH-ISSLKDLKVLQRTPIRVLHRRSPLEREKIIHWMKVETI------------------------------AGSSQYFLLHLCTQAGTYIKEFVHGDLGRTQPSIGSIL-GCRAEILQLDVTDI 516          
BLAST of NO15G02850 vs. NCBI_GenBank
Match: XP_015575544.1 (PREDICTED: putative tRNA pseudouridine synthase Pus10 isoform X4 [Ricinus communis])

HSP 1 Score: 199.9 bits (507), Expect = 2.300e-47
Identity = 174/590 (29.49%), Postives = 264/590 (44.75%), Query Frame = 0
Query:   37 LYPKLECLRCSLRVAGVWQRHVFLASEKRLRATLAPVLGD-----------LTLATARPDAAVCPLCLGLLQ-----DPDLMKDTPLMSSVVEAIVLQIKKKGYVLPE---AVESSGTISNKETKLGFILGLTLPASLAIRDRAALHWLEASVNLFYCRSGGPVEVKDILKFAIEEHLQQYLPCFATAPSPPSPGTFKLDLSFFKPSVDADDYRHICSIMPRTYLEGKAYRRTRKRKKHAGTNLENLCTSTMVGHVVGVAAGDGEVRKKMADWFECLSEGNFIDHTDEHQ-------KKEAASPAVTTVSVTREAFYLKGKYLKFSREMPQTLWLLEGGVRKGKASVEEVISEPVREWCEPESVVLMGSGREDMDVRMLGHGRPFLLQVNDPRRVPKEEGGQEEVAALQAAINAKMGLNREGDVVVRELSVSDRRQVKIMHAGAAEKQKVYACRVWVGGKVGREELSKCLESKRDLAVEQMTPIRVLHRRALLTRRKDIYEMRCEDVKVVEKEGEXXXXXXXXXXXXXXXXXXXXXXXALGTYFTLHLRTAAGTYIKEFVHGDMGRTRPNVGSLLGGLSADLLALDVTGV 601
            L P   C+RC  R+ GV Q H+F  +    R+ +  +LG+            T   +  D  +C +CLG+LQ     D  ++       ++  +I   IK++G+ +      V  +  I   E  +   +     + L         W + SV+   C        K+ LKFAI   L++ L       S PS    +L  +  KPS           I P +   G+  +R +     A  ++ N   +   G        D  + K +       SE +F    + H+       K++   P        R   Y  G+YLKFSR + QT W+++   R G+AS+EE+I   +   C+ +S     +GRED+DVRMLG GRPFL+++ +PR++P E         L   I  K+    +  V VR L +       +MH G AEKQK Y   VW+   +  ++L + + S +D+ + Q TP+RVLHRR+ L R+K I+ M+ E +                                   YF LHL T AGTYIKEFVHGD+GRT P++GS+L G  A++L LDVT V
Sbjct:    9 LMPLKICMRCIFRLLGV-QGHIFF-TYPLSRSLMHNILGESWKDDEDMKGCSTYNESGVDQEICNVCLGILQFIHRDDKGVLVKKHNAVNLCVSIAELIKQEGHQIDSFSLEVSIAPIIQENERVIRLYMERKYRSEL---------WFQESVSKCIC-------TKEALKFAIANPLERML----DVKSGPSSCRIRLTYTQAKPS----------GIAPNSVPGGEGCKRRKTGITDAPESVNNELINARNG------CFDSSMYKGIDS-----SESSFCG-LENHESSECIFPKEKVKEPCNLLFLCYRTPIYFGGRYLKFSRNVSQTRWIID-DERMGEASIEEIIGGSIFPMCQGDSYKFHAAGREDIDVRMLGSGRPFLVEIQNPRQLPSE--------TLVEEIETKINNMHDKLVGVRHLKMVSNHSWTLMHEGEAEKQKQYCALVWISRPLEDQDL-QSIASLKDMQILQRTPVRVLHRRSPLERQKIIHWMKIERL------------------------------TGSCQYFLLHLCTQAGTYIKEFVHGDLGRTHPSIGSIL-GCRAEILQLDVTEV 513          
BLAST of NO15G02850 vs. NCBI_GenBank
Match: XP_024024567.1 (putative tRNA pseudouridine synthase Pus10 isoform X1 [Morus notabilis])

HSP 1 Score: 199.5 bits (506), Expect = 3.000e-47
Identity = 173/591 (29.27%), Postives = 269/591 (45.52%), Query Frame = 0
Query:   43 CLRCSLRVAGVWQRHVFLASEKRLRATLAPVLGDLT----------------------LATARPDAAVCPLCLGLLQ-----DPDLMKDTPLMSSVVEAIVLQIKKKGYVLPEAVESSGTISNKETKLGFILGLTLPASLAIRDRAALHWLE---ASVNLFYCRSGGPVE-VKDILKFAIEEHLQQYLPCFATAPSPPSPGTFKLDLSFFKPSVDADDYRHICSIMPRTYLEGKAYRRTRKRKKHAGTNLENLCTSTMVGHVVGVAAGDG-EVRKKMADWFECLSEGNFIDHTDEHQKKEAASPAVTTVSVTREAFYLKGKYLKFSREMPQTLWLLEGGVRKGKASVEEVISEPVREWCEPESVVLMGSGREDMDVRMLGHGRPFLLQVNDPRRVPKEEGGQEEVAALQAAINAKMGLNREGDVV-VRELSVSDRRQVKIMHAGAAEKQKVYACRVWVGGKVGREELSKCLESKRDLAVEQMTPIRVLHRRALLTRRKDIYEMRCEDVKVVEKEGEXXXXXXXXXXXXXXXXXXXXXXXALGTYFTLHLRTAAGTYIKEFVHGDMGRTRPNVGSLLGGLSADLLALDVTGV 601
            CLRC LR+ G+ +  ++      L + L+ V GDLT                      L     + A+C LCLG+LQ     D   +           +IV  +K++G+ +                 GF L +++P  +   +++   +++    S + F  +S    + VKD LK  + + L++ L C +      +  TF++ L++ +            S M +T++E K   + RK       +LE +               DG +V    +D    + E +     D       + P        R   Y  G+YLK+SR + QT W+++   R G ASVEE+I   +   C  +S     +GRED+DVRMLG GRPFL+++ + R +P +    E+V  ++  IN     N E  +V VR L +   +   +MH G AEKQK YA  VW+   + ++E  + + S +++ V Q TPIRVLHRR+ L R K I+ M+ E +                                   YF LHL T AGTYIKEFVHGD+GRT P++G++L G  A++L LDVT V
Sbjct:   53 CLRCILRLLGI-RGELYDNCTLSLSSILSSVFGDLTDSEKHTINDASVENGKCSESPNLKELEVNEALCSLCLGILQFSYCDDKASVVRKDSAYDFASSIVELVKQEGHQID----------------GFSLEVSIPPVIQENEQSVCLYMKKKYESESWFQRKSLSERDSVKDALKTCMTKSLEKLLDCNS------NMSTFRIRLTYTQAE---------SSKMVQTFVERKQGCKRRKAVTGTDNDLETV---------------DGIKVANFPSDEIAAVIESSLETCQDSGLSDRVSEPCQLVFHCCRTHIYFGGRYLKYSRNVSQTRWIID-DERMGDASVEELIGSNILPVCRGDSYKFHAAGREDIDVRMLGSGRPFLVEIQNGRHLPCD----EDVKNIEEKIN-----NLENKLVGVRNLKIMGSQGWTLMHEGEAEKQKQYAALVWISRPL-KDEDFQSISSYKEMRVVQKTPIRVLHRRSPLEREKIIHWMKIEKI------------------------------VGSSQYFLLHLCTQAGTYIKEFVHGDLGRTYPSIGTIL-GCRAEILQLDVTDV 554          
BLAST of NO15G02850 vs. NCBI_GenBank
Match: EOY15171.1 (Pseudouridine synthase family protein, putative isoform 1 [Theobroma cacao])

HSP 1 Score: 198.7 bits (504), Expect = 5.200e-47
Identity = 171/573 (29.84%), Postives = 262/573 (45.72%), Query Frame = 0
Query:   43 CLRCSLRVAGVWQRHVFLASEKRLRATLAPVLGDLTLATARPDAAVCPLCLGLLQDP--DLMKDTPLMSSVVEAIVLQIKKKGYVLPEAVESSGTISNKETKLGFILGLTLPASLAIRDRAALH----------WLEASVNLFYCRSGGPVEVKDILKFAIEEHLQQYLPCFATAPSPPSPGTFKLDLSFFKPSVDADDYRHICSIMPRTYLEGKAYRRTRKRKKHAGTNLENLCTSTMVGHVVGVAAGDGEVRKKMADWFECLSEGNFIDHTDEHQK---KEAASPAVTTVSVTREAFYLKGKYLKFSREMPQTLWLLEGGVRKGKASVEEVISEPVREWCEPESVVLMGSGREDMDVRMLGHGRPFLLQVNDPRRVPKEEGGQEEVAALQAAINAKMGLNREGDVVVRELSVSDRRQVKIMHAGAAEKQKVYACRVWVGGKVGREELSKCLESKRDLAVEQMTPIRVLHRRALLTRRKDIYEMRCEDVKVVEKEGEXXXXXXXXXXXXXXXXXXXXXXXALGTYFTLHLRTAAGTYIKEFVHGDMGRTRPNVGSLLGGLSADLLALDVTGV 601
            C RC LR+ G+ + H++  S    ++ L  +L + T   +  +   C +CLG+LQ    D  ++T +     + + L I        E V+  G   +     GF L +++P  +   + + L           W +  + L  C S     VKD+LKFAI + L+  L   A+A S      F++ L++                     ++    R    +++  GT  EN   +     V+      G    +        S G     T EH +   ++ + P        R   YL G+YLK+SR + QT W+++   R G+ASVEE+I   +   C+ ++     +GRED+DVRMLG GRPFLL++ + R+VP E   +E  + +    N  +G        V+ L V   +   +MH G AEKQK Y   VW+   +  E++ + +    D+ + Q TPIRVLHRR+ L R K I+ M+ E +                                   YF LHL T AGTYIKEFVHGD+GRT+P+VGS+L G  A++L LDVT V
Sbjct:   50 CARCVLRLFGI-EEHIYCHSSFS-QSMLGSILEEETSFKSEVEFQFCSVCLGVLQFSYCDDGEETVVKKESAKDMALSI-------AELVKQEGHQID-----GFSLEVSVPPLILENESSLLSHMKKKYESEPWFQERL-LSKCHS-----VKDVLKFAITKPLETLLGVKASASS------FRIRLTYTHKRASKK-------------VQNSVERNQECKRRKTGT--ENALHNVNDESVIADKDCSGYSTIETNSVTGIFSNGVQDQETSEHFESPIEKVSEPCHLVYVCCRTHIYLCGRYLKYSRNVSQTRWIID-EERMGEASVEEIIGSNILPICQGDNYKFHAAGREDIDVRMLGSGRPFLLEIQNARQVPSELIVKEMESKINGLENKSVG--------VKNLKVVGSQGWALMHEGEAEKQKQYCALVWISRPLEDEDM-QTISLLNDMKILQRTPIRVLHRRSPLEREKIIHWMKIERI------------------------------AGSSQYFLLHLCTQAGTYIKEFVHGDLGRTQPSVGSIL-GCRAEILQLDVTDV 540          
BLAST of NO15G02850 vs. NCBI_GenBank
Match: XP_002510624.1 (PREDICTED: putative tRNA pseudouridine synthase Pus10 isoform X1 [Ricinus communis] >EEF52811.1 conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 198.7 bits (504), Expect = 5.200e-47
Identity = 172/584 (29.45%), Postives = 262/584 (44.86%), Query Frame = 0
Query:   43 CLRCSLRVAGVWQRHVFLASEKRLRATLAPVLGD-----------LTLATARPDAAVCPLCLGLLQ-----DPDLMKDTPLMSSVVEAIVLQIKKKGYVLPE---AVESSGTISNKETKLGFILGLTLPASLAIRDRAALHWLEASVNLFYCRSGGPVEVKDILKFAIEEHLQQYLPCFATAPSPPSPGTFKLDLSFFKPSVDADDYRHICSIMPRTYLEGKAYRRTRKRKKHAGTNLENLCTSTMVGHVVGVAAGDGEVRKKMADWFECLSEGNFIDHTDEHQ-------KKEAASPAVTTVSVTREAFYLKGKYLKFSREMPQTLWLLEGGVRKGKASVEEVISEPVREWCEPESVVLMGSGREDMDVRMLGHGRPFLLQVNDPRRVPKEEGGQEEVAALQAAINAKMGLNREGDVVVRELSVSDRRQVKIMHAGAAEKQKVYACRVWVGGKVGREELSKCLESKRDLAVEQMTPIRVLHRRALLTRRKDIYEMRCEDVKVVEKEGEXXXXXXXXXXXXXXXXXXXXXXXALGTYFTLHLRTAAGTYIKEFVHGDMGRTRPNVGSLLGGLSADLLALDVTGV 601
            C+RC  R+ GV Q H+F  +    R+ +  +LG+            T   +  D  +C +CLG+LQ     D  ++       ++  +I   IK++G+ +      V  +  I   E  +   +     + L         W + SV+   C        K+ LKFAI   L++ L       S PS    +L  +  KPS           I P +   G+  +R +     A  ++ N   +   G        D  + K +       SE +F    + H+       K++   P        R   Y  G+YLKFSR + QT W+++   R G+AS+EE+I   +   C+ +S     +GRED+DVRMLG GRPFL+++ +PR++P E         L   I  K+    +  V VR L +       +MH G AEKQK Y   VW+   +  ++L + + S +D+ + Q TP+RVLHRR+ L R+K I+ M+ E +                                   YF LHL T AGTYIKEFVHGD+GRT P++GS+L G  A++L LDVT V
Sbjct:   59 CMRCIFRLLGV-QGHIFF-TYPLSRSLMHNILGESWKDDEDMKGCSTYNESGVDQEICNVCLGILQFIHRDDKGVLVKKHNAVNLCVSIAELIKQEGHQIDSFSLEVSIAPIIQENERVIRLYMERKYRSEL---------WFQESVSKCIC-------TKEALKFAIANPLERML----DVKSGPSSCRIRLTYTQAKPS----------GIAPNSVPGGEGCKRRKTGITDAPESVNNELINARNG------CFDSSMYKGIDS-----SESSFCG-LENHESSECIFPKEKVKEPCNLLFLCYRTPIYFGGRYLKFSRNVSQTRWIID-DERMGEASIEEIIGGSIFPMCQGDSYKFHAAGREDIDVRMLGSGRPFLVEIQNPRQLPSE--------TLVEEIETKINNMHDKLVGVRHLKMVSNHSWTLMHEGEAEKQKQYCALVWISRPLEDQDL-QSIASLKDMQILQRTPVRVLHRRSPLERQKIIHWMKIERL------------------------------TGSCQYFLLHLCTQAGTYIKEFVHGDLGRTHPSIGSIL-GCRAEILQLDVTEV 557          
The following BLAST results are available for this feature:
BLAST of NO15G02850 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM22347.12.800e-14953.28trna pseudouridine synthase pus10 [Nannochloropsis... [more]
XP_019449496.17.300e-4931.16PREDICTED: putative tRNA pseudouridine synthase Pu... [more]
XP_008377102.19.500e-4929.98PREDICTED: putative tRNA pseudouridine synthase Pu... [more]
XP_013703655.18.000e-4829.13putative tRNA pseudouridine synthase Pus10 isoform... [more]
XP_007017946.28.000e-4829.84PREDICTED: putative tRNA pseudouridine synthase Pu... [more]
OIW07930.11.000e-4730.63hypothetical protein TanjilG_20031 [Lupinus angust... [more]
XP_015575544.12.300e-4729.49PREDICTED: putative tRNA pseudouridine synthase Pu... [more]
XP_024024567.13.000e-4729.27putative tRNA pseudouridine synthase Pus10 isoform... [more]
EOY15171.15.200e-4729.84Pseudouridine synthase family protein, putative is... [more]
XP_002510624.15.200e-4729.45PREDICTED: putative tRNA pseudouridine synthase Pu... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL141nonsL141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR006ncniR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR064ngnoR064Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR063ngnoR063Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001358NSK001358Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO15G02850.1NO15G02850.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|554805gene_4846Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100208g13gene8081Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO15G02850.1NO15G02850.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO15G02850 ID=NO15G02850|Name=NO15G02850|organism=Nannochloropsis oceanica|type=gene|length=2177bp
ATGGCAGAGTCCGCTTTGCCGCCGATTCCACGATCTTCTACAAAGCCTGT
AGAACTGCTACCATCATTGCGACCCAACGGGGATCACTGGTTGCCGGCCT
TCCAGCGTCTCTATCCCAAGCTTGAGTGCCTCCGCTGCAGCCTCCGCGTG
GCCGGAGTATGGCAGCGCCATGTTTTCCTTGCATCCGAGAAGCGGTTGCG
CGCGACCCTGGCTCCCGTTTTAGGCGATTTAACTCTAGCTACTGCCAGAC
CTGACGCCGCTGTCTGTCCCCTGTGCTTGGGCCTGCTGCAAGACCCTGAC
TTAATGAAGGACACGCCTCTCATGTCTAGCGTGGTGGAGGCAATTGTTCT
TCAAATTAAAAAGAAGGGATACGTGTTGCCCGAAGCTGTAGAATCCTCCG
GCACCATCAGCAATAAAGAGACGAAGCTAGGCTTCATCCTTGGTCTTACC
CTCCCCGCCTCTCTCGCCATTCGGGACCGCGCTGCTCTTCATTGGCTGGA
AGCCAGCGTCAACCTCTTCTACTGTCGCTCAGGCGGGCCTGTGGAAGTAA
AAGACATTCTCAAATTCGCTATCGAAGAACATCTGCAGCAATATCTACCC
TGCTTCGCTACTGCTCCCTCTCCTCCTTCCCCCGGTACCTTCAAGTTGGA
TTTGTCTTTTTTTAAACCGTCGGTCGATGCCGATGATTACCGGCACATCT
GCTCGATCATGCCTCGGACGTACTTGGAGGGAAAAGCCTACAGACGGACT
CGAAAGCGCAAGAAACACGCAGGGACGAATTTAGAGAATTTGTGCACGAG
CACAATGGTCGGCCATGTCGTTGGGGTAGCAGCAGGTGATGGGGAGGTAC
GGAAAAAAATGGCGGACTGGTTTGAGTGTCTCTCGGAAGGGAATTTCATT
GATCACACGGACGAGCACCAGAAGAAGGAGGCGGCTTCTCCAGCCGTTAC
TACGGTGTCTGTTACCAGAGAAGCTTTTTATTTGAAGGGGAAATATTTAA
AATTTAGTCGGGAGATGCCCCAGACGCTGTGGTTGCTTGAGGGGGGGGTG
AGGAAGGGCAAGGCCTCAGTGGAGGAAGTGATCTCGGAGCCGGTGAGGGA
ATGGTGTGAGCCAGAGAGTGTGGTGCTGATGGGCTCGGGGAGGGAGGACA
TGGACGTGAGGATGCTGGGACATGGCCGCCCATTTTTGTTGCAAGTGAAC
GACCCGAGGAGGGTACCAAAGGAGGAAGGGGGGCAGGAAGAGGTAGCGGC
GTTGCAGGCGGCGATCAATGCCAAGATGGGTTTGAATCGCGAGGGGGACG
TAGTGGTGCGAGAGTTGAGTGTGTCCGACCGAAGGCAAGTGAAAATAATG
CACGCGGGTGCGGCGGAGAAGCAGAAAGTGTATGCGTGTCGGGTGTGGGT
CGGGGGGAAGGTGGGGAGGGAGGAGCTGAGCAAGTGCTTGGAGTCGAAGA
GGGACTTGGCGGTGGAACAGATGACACCAATTCGCGTGCTCCATCGGAGA
GCGCTTTTGACACGGCGGAAGGATATTTATGAGATGCGGTGTGAGGACGT
AAAAGTCGTGGAGAAGGAAGGGGAGGATGGGAGGGAGGGAGGGAAGGAGG
GAGGGAGGGAGGGTGACGGCATGACGGAGGAGGGAGTGGAGGAGGCGCTG
GGCACGTATTTCACGTTGCATTTGCGGACGGCCGCGGGGACGTATATCAA
AGAGTTTGTGCATGGGGATATGGGGAGAACGAGGCCGAACGTCGGCAGCT
TGTTGGGAGGATTAAGTGCGGACCTGCTTGCCTTGGATGTGACGGGTGTG
GTGGTGGAGGAAGAAGAGGAGGAGGAAAAGGAGAAGGAGAAGGAGGAGGG
AGTCGAGGAGGAAGAGGAGGAGGAGGAGGAGTAGCATTGTAGTGGAAGGG
GGGGTTGGAGGAGGACGAGGACGAGGAGGAGTAGCGTGGTTGGACAATGA
CTGTTGGTCTATGTGATGCTTTGTGATCATCAAGAGGGAACGAGGAAGGG
CTCATGAGAAGGCCAAGCCAACGCAGATTCTTGATAGACCAGGACGAAGC
TGTCCTGAGCCTTTACAAGACGTCTCTAGACTAGAGCACCTTGGATGGAC
ACATGTGGAAGAAATTGAAGGCAAGTAACCGTTGTAGAATACAAATCAAT
AAACAAACAAATATATACAAACAAATG
back to top

protein sequence of NO15G02850.1

>NO15G02850.1-protein ID=NO15G02850.1-protein|Name=NO15G02850.1|organism=Nannochloropsis oceanica|type=polypeptide|length=628bp
MAESALPPIPRSSTKPVELLPSLRPNGDHWLPAFQRLYPKLECLRCSLRV
AGVWQRHVFLASEKRLRATLAPVLGDLTLATARPDAAVCPLCLGLLQDPD
LMKDTPLMSSVVEAIVLQIKKKGYVLPEAVESSGTISNKETKLGFILGLT
LPASLAIRDRAALHWLEASVNLFYCRSGGPVEVKDILKFAIEEHLQQYLP
CFATAPSPPSPGTFKLDLSFFKPSVDADDYRHICSIMPRTYLEGKAYRRT
RKRKKHAGTNLENLCTSTMVGHVVGVAAGDGEVRKKMADWFECLSEGNFI
DHTDEHQKKEAASPAVTTVSVTREAFYLKGKYLKFSREMPQTLWLLEGGV
RKGKASVEEVISEPVREWCEPESVVLMGSGREDMDVRMLGHGRPFLLQVN
DPRRVPKEEGGQEEVAALQAAINAKMGLNREGDVVVRELSVSDRRQVKIM
HAGAAEKQKVYACRVWVGGKVGREELSKCLESKRDLAVEQMTPIRVLHRR
ALLTRRKDIYEMRCEDVKVVEKEGEDGREGGKEGGREGDGMTEEGVEEAL
GTYFTLHLRTAAGTYIKEFVHGDMGRTRPNVGSLLGGLSADLLALDVTGV
VVEEEEEEEKEKEKEEGVEEEEEEEEE*
back to top
Synonyms
Publications