NO15G02850.1, NO15G02850.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G02850.1
Unique NameNO15G02850.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2177
Alignment locationchr15:777456..779632 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:777456..779632 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO15G02850.1 vs.
Match: EWM22347.1 (trna pseudouridine synthase pus10 [Nannochloropsis gaditana])

HSP 1 Score: 557.0 bits (1434), Expect = 7.500e-155
Identity = 335/633 (52.92%), Postives = 416/633 (65.72%), Query Frame = 0 
Query:   16 PVELLPSLR-PNGDHW-LPAFQRLYPKLECLRCSLRVAGVWQRHVFLASEKRLRATLAPVLG-DLTLATARPDAAVCPLCLGLLQDPDLMKDTPLMSSVVEAIVLQIKKKGYVLPEAVESSGTISNKET------------------KLGFILGLTLPASLAIRDRAALHWLEASVNL-FYCRSGGPVEVKDILKFAIEEHLQQYLPCFATAPSPPSPGTFKLDLSFFKPSVDADDYRH-ICSIMPRTYLEGKAYRRTRKRKKHAGTNLENLCTSTMVGHVVGVAAGDGEVRKKMADWFECLSEGNFIDHTDEHQKKEAA--SPAVTTVSVTREAFYLKGKYLKFSREMPQTLWLLEGGVRKGKASVEEVISEPVREWCEPESVVLMGSGREDMDVRMLGHGRPFLLQVNDPRRVPKEEGGQEEVAALQAAINAKMGLNREGDVVVRELSVSDRRQVKIMHAGAAEKQKVYACRVWVGGKVGREELSKCLESKRDLAVEQMTPIRVLHRRALLTRRKDIYEMRCEDVKVVEKEGEDGREGGKEGGREGDGMTEEGVEEALGTYFTLHLRTAAGTYIKEFVHGDMGRTRPNVGSLLGGLSADLLALDVTGVVVEEEEEEEKEKEKEEGVEEEEE 624
            PV   PSL  P+ D W LPAF  LYPK+ C+RCSLR+AGV    +  A E++LRATL    G +++ AT R    +CPLCLG+LQ      D  L S++++AI+ QIK K YVLP   +S     +K T                  K+ FILG++LP S+AIRDRAAL W+        +   G  ++VK+ILK  +E  L ++ PC   A S PSPG  ++DLSF+    D  DY   +  ++P     GKA+ RTRKR++H  +N ENLC +T+V  V+  A GD  VR  +A +F      N +  +       AA  +PA ++V VTREA +L G+YLK SREMPQTLW++EGG RKGKASVEEV++EPV +W    S VL+GSGREDMDVRMLG GRPFLL+VNDPRR+P    G+EEVA L+AAIN   GLN  GDV V  L +SD+ +VK MHAGA EK K+Y+CRVWVGG+V R  L+  LE  ++L V Q TPIRVLHRRALLTR K I+EMRC DVKVV        EGG+EGG       EEG E A+GTYFTLHLRT+AGTYIKEFVHGDMGRTRP+VG LLGGL ADLLALDVTG+V+E E     E E+EEG E+EEE
Sbjct:    2 PVSPPPSLPLPDEDTWSLPAFSLLYPKINCIRCSLRLAGVCDAEILRAPERQLRATLCSAQGAEISHATCR----MCPLCLGILQSSG---DRELGSALLDAILAQIKTKKYVLPTGGDSPDMTQHKSTTDPVGEMVAEHSKYLLERKVPFILGVSLPGSVAIRDRAALEWVACEQQTGRHQDPGRRLDVKEILKAVLESCLPKHYPCLYAA-STPSPGALRVDLSFWHAGADEADYHQGVRILLPNA--TGKAFNRTRKRRRHEESNQENLCNATVVARVLQAATGDPNVRSGLAVFF----ARNLMPPSTHSPTAYAALETPAASSVQVTREAIFLAGRYLKLSREMPQTLWVVEGGRRKGKASVEEVVAEPVLDWTSATSAVLIGSGREDMDVRMLGTGRPFLLRVNDPRRIP----GREEVAGLEAAINQTTGLNSGGDVRVHGLRLSDKHEVKAMHAGATEKVKMYSCRVWVGGRVDRALLATSLEGSKELVVAQKTPIRVLHRRALLTRPKVIHEMRCTDVKVV--------EGGEEGG-------EEGGEMAVGTYFTLHLRTSAGTYIKEFVHGDMGRTRPSVGDLLGGLEADLLALDVTGIVMEGE-----EGEREEGKEQEEE 596
The following BLAST results are available for this feature:
BLAST of NO15G02850.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22347.17.500e-15552.92trna pseudouridine synthase pus10 [Nannochloropsis... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G02850NO15G02850Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G02850.1NO15G02850.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G02850.1.cds1NO15G02850.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G02850.1 ID=NO15G02850.1|Name=NO15G02850.1|organism=Nannochloropsis oceanica|type=mRNA|length=2177bp
ATGGCAGAGTCCGCTTTGCCGCCGATTCCACGATCTTCTACAAAGCCTGT
AGAACTGCTACCATCATTGCGACCCAACGGGGATCACTGGTTGCCGGCCT
TCCAGCGTCTCTATCCCAAGCTTGAGTGCCTCCGCTGCAGCCTCCGCGTG
GCCGGAGTATGGCAGCGCCATGTTTTCCTTGCATCCGAGAAGCGGTTGCG
CGCGACCCTGGCTCCCGTTTTAGGCGATTTAACTCTAGCTACTGCCAGAC
CTGACGCCGCTGTCTGTCCCCTGTGCTTGGGCCTGCTGCAAGACCCTGAC
TTAATGAAGGACACGCCTCTCATGTCTAGCGTGGTGGAGGCAATTGTTCT
TCAAATTAAAAAGAAGGGATACGTGTTGCCCGAAGCTGTAGAATCCTCCG
GCACCATCAGCAATAAAGAGACGAAGCTAGGCTTCATCCTTGGTCTTACC
CTCCCCGCCTCTCTCGCCATTCGGGACCGCGCTGCTCTTCATTGGCTGGA
AGCCAGCGTCAACCTCTTCTACTGTCGCTCAGGCGGGCCTGTGGAAGTAA
AAGACATTCTCAAATTCGCTATCGAAGAACATCTGCAGCAATATCTACCC
TGCTTCGCTACTGCTCCCTCTCCTCCTTCCCCCGGTACCTTCAAGTTGGA
TTTGTCTTTTTTTAAACCGTCGGTCGATGCCGATGATTACCGGCACATCT
GCTCGATCATGCCTCGGACGTACTTGGAGGGAAAAGCCTACAGACGGACT
CGAAAGCGCAAGAAACACGCAGGGACGAATTTAGAGAATTTGTGCACGAG
CACAATGGTCGGCCATGTCGTTGGGGTAGCAGCAGGTGATGGGGAGGTAC
GGAAAAAAATGGCGGACTGGTTTGAGTGTCTCTCGGAAGGGAATTTCATT
GATCACACGGACGAGCACCAGAAGAAGGAGGCGGCTTCTCCAGCCGTTAC
TACGGTGTCTGTTACCAGAGAAGCTTTTTATTTGAAGGGGAAATATTTAA
AATTTAGTCGGGAGATGCCCCAGACGCTGTGGTTGCTTGAGGGGGGGGTG
AGGAAGGGCAAGGCCTCAGTGGAGGAAGTGATCTCGGAGCCGGTGAGGGA
ATGGTGTGAGCCAGAGAGTGTGGTGCTGATGGGCTCGGGGAGGGAGGACA
TGGACGTGAGGATGCTGGGACATGGCCGCCCATTTTTGTTGCAAGTGAAC
GACCCGAGGAGGGTACCAAAGGAGGAAGGGGGGCAGGAAGAGGTAGCGGC
GTTGCAGGCGGCGATCAATGCCAAGATGGGTTTGAATCGCGAGGGGGACG
TAGTGGTGCGAGAGTTGAGTGTGTCCGACCGAAGGCAAGTGAAAATAATG
CACGCGGGTGCGGCGGAGAAGCAGAAAGTGTATGCGTGTCGGGTGTGGGT
CGGGGGGAAGGTGGGGAGGGAGGAGCTGAGCAAGTGCTTGGAGTCGAAGA
GGGACTTGGCGGTGGAACAGATGACACCAATTCGCGTGCTCCATCGGAGA
GCGCTTTTGACACGGCGGAAGGATATTTATGAGATGCGGTGTGAGGACGT
AAAAGTCGTGGAGAAGGAAGGGGAGGATGGGAGGGAGGGAGGGAAGGAGG
GAGGGAGGGAGGGTGACGGCATGACGGAGGAGGGAGTGGAGGAGGCGCTG
GGCACGTATTTCACGTTGCATTTGCGGACGGCCGCGGGGACGTATATCAA
AGAGTTTGTGCATGGGGATATGGGGAGAACGAGGCCGAACGTCGGCAGCT
TGTTGGGAGGATTAAGTGCGGACCTGCTTGCCTTGGATGTGACGGGTGTG
GTGGTGGAGGAAGAAGAGGAGGAGGAAAAGGAGAAGGAGAAGGAGGAGGG
AGTCGAGGAGGAAGAGGAGGAGGAGGAGGAGTAGCATTGTAGTGGAAGGG
GGGGTTGGAGGAGGACGAGGACGAGGAGGAGTAGCGTGGTTGGACAATGA
CTGTTGGTCTATGTGATGCTTTGTGATCATCAAGAGGGAACGAGGAAGGG
CTCATGAGAAGGCCAAGCCAACGCAGATTCTTGATAGACCAGGACGAAGC
TGTCCTGAGCCTTTACAAGACGTCTCTAGACTAGAGCACCTTGGATGGAC
ACATGTGGAAGAAATTGAAGGCAAGTAACCGTTGTAGAATACAAATCAAT
AAACAAACAAATATATACAAACAAATG
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protein sequence of NO15G02850.1

>NO15G02850.1-protein ID=NO15G02850.1-protein|Name=NO15G02850.1|organism=Nannochloropsis oceanica|type=polypeptide|length=628bp
MAESALPPIPRSSTKPVELLPSLRPNGDHWLPAFQRLYPKLECLRCSLRV
AGVWQRHVFLASEKRLRATLAPVLGDLTLATARPDAAVCPLCLGLLQDPD
LMKDTPLMSSVVEAIVLQIKKKGYVLPEAVESSGTISNKETKLGFILGLT
LPASLAIRDRAALHWLEASVNLFYCRSGGPVEVKDILKFAIEEHLQQYLP
CFATAPSPPSPGTFKLDLSFFKPSVDADDYRHICSIMPRTYLEGKAYRRT
RKRKKHAGTNLENLCTSTMVGHVVGVAAGDGEVRKKMADWFECLSEGNFI
DHTDEHQKKEAASPAVTTVSVTREAFYLKGKYLKFSREMPQTLWLLEGGV
RKGKASVEEVISEPVREWCEPESVVLMGSGREDMDVRMLGHGRPFLLQVN
DPRRVPKEEGGQEEVAALQAAINAKMGLNREGDVVVRELSVSDRRQVKIM
HAGAAEKQKVYACRVWVGGKVGREELSKCLESKRDLAVEQMTPIRVLHRR
ALLTRRKDIYEMRCEDVKVVEKEGEDGREGGKEGGREGDGMTEEGVEEAL
GTYFTLHLRTAAGTYIKEFVHGDMGRTRPNVGSLLGGLSADLLALDVTGV
VVEEEEEEEKEKEKEEGVEEEEEEEEE*
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mRNA from alignment at chr15:777456..779632+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G02850.1 ID=NO15G02850.1|Name=NO15G02850.1|organism=Nannochloropsis oceanica|type=mRNA|length=2177bp|location=Sequence derived from alignment at chr15:777456..779632+ (Nannochloropsis oceanica)
ATGGCAGAGTCCGCTTTGCCGCCGATTCCACGATCTTCTACAAAGCCTGT
AGAACTGCTACCATCATTGCGACCCAACGGGGATCACTGGTTGCCGGCCT
TCCAGCGTCTCTATCCCAAGCTTGAGTGCCTCCGCTGCAGCCTCCGCGTG
GCCGGAGTATGGCAGCGCCATGTTTTCCTTGCATCCGAGAAGCGGTTGCG
CGCGACCCTGGCTCCCGTTTTAGGCGATTTAACTCTAGCTACTGCCAGAC
CTGACGCCGCTGTCTGTCCCCTGTGCTTGGGCCTGCTGCAAGACCCTGAC
TTAATGAAGGACACGCCTCTCATGTCTAGCGTGGTGGAGGCAATTGTTCT
TCAAATTAAAAAGAAGGGATACGTGTTGCCCGAAGCTGTAGAATCCTCCG
GCACCATCAGCAATAAAGAGACGAAGCTAGGCTTCATCCTTGGTCTTACC
CTCCCCGCCTCTCTCGCCATTCGGGACCGCGCTGCTCTTCATTGGCTGGA
AGCCAGCGTCAACCTCTTCTACTGTCGCTCAGGCGGGCCTGTGGAAGTAA
AAGACATTCTCAAATTCGCTATCGAAGAACATCTGCAGCAATATCTACCC
TGCTTCGCTACTGCTCCCTCTCCTCCTTCCCCCGGTACCTTCAAGTTGGA
TTTGTCTTTTTTTAAACCGTCGGTCGATGCCGATGATTACCGGCACATCT
GCTCGATCATGCCTCGGACGTACTTGGAGGGAAAAGCCTACAGACGGACT
CGAAAGCGCAAGAAACACGCAGGGACGAATTTAGAGAATTTGTGCACGAG
CACAATGGTCGGCCATGTCGTTGGGGTAGCAGCAGGTGATGGGGAGGTAC
GGAAAAAAATGGCGGACTGGTTTGAGTGTCTCTCGGAAGGGAATTTCATT
GATCACACGGACGAGCACCAGAAGAAGGAGGCGGCTTCTCCAGCCGTTAC
TACGGTGTCTGTTACCAGAGAAGCTTTTTATTTGAAGGGGAAATATTTAA
AATTTAGTCGGGAGATGCCCCAGACGCTGTGGTTGCTTGAGGGGGGGGTG
AGGAAGGGCAAGGCCTCAGTGGAGGAAGTGATCTCGGAGCCGGTGAGGGA
ATGGTGTGAGCCAGAGAGTGTGGTGCTGATGGGCTCGGGGAGGGAGGACA
TGGACGTGAGGATGCTGGGACATGGCCGCCCATTTTTGTTGCAAGTGAAC
GACCCGAGGAGGGTACCAAAGGAGGAAGGGGGGCAGGAAGAGGTAGCGGC
GTTGCAGGCGGCGATCAATGCCAAGATGGGTTTGAATCGCGAGGGGGACG
TAGTGGTGCGAGAGTTGAGTGTGTCCGACCGAAGGCAAGTGAAAATAATG
CACGCGGGTGCGGCGGAGAAGCAGAAAGTGTATGCGTGTCGGGTGTGGGT
CGGGGGGAAGGTGGGGAGGGAGGAGCTGAGCAAGTGCTTGGAGTCGAAGA
GGGACTTGGCGGTGGAACAGATGACACCAATTCGCGTGCTCCATCGGAGA
GCGCTTTTGACACGGCGGAAGGATATTTATGAGATGCGGTGTGAGGACGT
AAAAGTCGTGGAGAAGGAAGGGGAGGATGGGAGGGAGGGAGGGAAGGAGG
GAGGGAGGGAGGGTGACGGCATGACGGAGGAGGGAGTGGAGGAGGCGCTG
GGCACGTATTTCACGTTGCATTTGCGGACGGCCGCGGGGACGTATATCAA
AGAGTTTGTGCATGGGGATATGGGGAGAACGAGGCCGAACGTCGGCAGCT
TGTTGGGAGGATTAAGTGCGGACCTGCTTGCCTTGGATGTGACGGGTGTG
GTGGTGGAGGAAGAAGAGGAGGAGGAAAAGGAGAAGGAGAAGGAGGAGGG
AGTCGAGGAGGAAGAGGAGGAGGAGGAGGAGTAGCATTGTAGTGGAAGGG
GGGGTTGGAGGAGGACGAGGACGAGGAGGAGTAGCGTGGTTGGACAATGA
CTGTTGGTCTATGTGATGCTTTGTGATCATCAAGAGGGAACGAGGAAGGG
CTCATGAGAAGGCCAAGCCAACGCAGATTCTTGATAGACCAGGACGAAGC
TGTCCTGAGCCTTTACAAGACGTCTCTAGACTAGAGCACCTTGGATGGAC
ACATGTGGAAGAAATTGAAGGCAAGTAACCGTTGTAGAATACAAATCAAT
AAACAAACAAATATATACAAACAAATG
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Coding sequence (CDS) from alignment at chr15:777456..779632+

>NO15G02850.1 ID=NO15G02850.1|Name=NO15G02850.1|organism=Nannochloropsis oceanica|type=CDS|length=1884bp|location=Sequence derived from alignment at chr15:777456..779632+ (Nannochloropsis oceanica)
ATGGCAGAGTCCGCTTTGCCGCCGATTCCACGATCTTCTACAAAGCCTGT
AGAACTGCTACCATCATTGCGACCCAACGGGGATCACTGGTTGCCGGCCT
TCCAGCGTCTCTATCCCAAGCTTGAGTGCCTCCGCTGCAGCCTCCGCGTG
GCCGGAGTATGGCAGCGCCATGTTTTCCTTGCATCCGAGAAGCGGTTGCG
CGCGACCCTGGCTCCCGTTTTAGGCGATTTAACTCTAGCTACTGCCAGAC
CTGACGCCGCTGTCTGTCCCCTGTGCTTGGGCCTGCTGCAAGACCCTGAC
TTAATGAAGGACACGCCTCTCATGTCTAGCGTGGTGGAGGCAATTGTTCT
TCAAATTAAAAAGAAGGGATACGTGTTGCCCGAAGCTGTAGAATCCTCCG
GCACCATCAGCAATAAAGAGACGAAGCTAGGCTTCATCCTTGGTCTTACC
CTCCCCGCCTCTCTCGCCATTCGGGACCGCGCTGCTCTTCATTGGCTGGA
AGCCAGCGTCAACCTCTTCTACTGTCGCTCAGGCGGGCCTGTGGAAGTAA
AAGACATTCTCAAATTCGCTATCGAAGAACATCTGCAGCAATATCTACCC
TGCTTCGCTACTGCTCCCTCTCCTCCTTCCCCCGGTACCTTCAAGTTGGA
TTTGTCTTTTTTTAAACCGTCGGTCGATGCCGATGATTACCGGCACATCT
GCTCGATCATGCCTCGGACGTACTTGGAGGGAAAAGCCTACAGACGGACT
CGAAAGCGCAAGAAACACGCAGGGACGAATTTAGAGAATTTGTGCACGAG
CACAATGGTCGGCCATGTCGTTGGGGTAGCAGCAGGTGATGGGGAGGTAC
GGAAAAAAATGGCGGACTGGTTTGAGTGTCTCTCGGAAGGGAATTTCATT
GATCACACGGACGAGCACCAGAAGAAGGAGGCGGCTTCTCCAGCCGTTAC
TACGGTGTCTGTTACCAGAGAAGCTTTTTATTTGAAGGGGAAATATTTAA
AATTTAGTCGGGAGATGCCCCAGACGCTGTGGTTGCTTGAGGGGGGGGTG
AGGAAGGGCAAGGCCTCAGTGGAGGAAGTGATCTCGGAGCCGGTGAGGGA
ATGGTGTGAGCCAGAGAGTGTGGTGCTGATGGGCTCGGGGAGGGAGGACA
TGGACGTGAGGATGCTGGGACATGGCCGCCCATTTTTGTTGCAAGTGAAC
GACCCGAGGAGGGTACCAAAGGAGGAAGGGGGGCAGGAAGAGGTAGCGGC
GTTGCAGGCGGCGATCAATGCCAAGATGGGTTTGAATCGCGAGGGGGACG
TAGTGGTGCGAGAGTTGAGTGTGTCCGACCGAAGGCAAGTGAAAATAATG
CACGCGGGTGCGGCGGAGAAGCAGAAAGTGTATGCGTGTCGGGTGTGGGT
CGGGGGGAAGGTGGGGAGGGAGGAGCTGAGCAAGTGCTTGGAGTCGAAGA
GGGACTTGGCGGTGGAACAGATGACACCAATTCGCGTGCTCCATCGGAGA
GCGCTTTTGACACGGCGGAAGGATATTTATGAGATGCGGTGTGAGGACGT
AAAAGTCGTGGAGAAGGAAGGGGAGGATGGGAGGGAGGGAGGGAAGGAGG
GAGGGAGGGAGGGTGACGGCATGACGGAGGAGGGAGTGGAGGAGGCGCTG
GGCACGTATTTCACGTTGCATTTGCGGACGGCCGCGGGGACGTATATCAA
AGAGTTTGTGCATGGGGATATGGGGAGAACGAGGCCGAACGTCGGCAGCT
TGTTGGGAGGATTAAGTGCGGACCTGCTTGCCTTGGATGTGACGGGTGTG
GTGGTGGAGGAAGAAGAGGAGGAGGAAAAGGAGAAGGAGAAGGAGGAGGG
AGTCGAGGAGGAAGAGGAGGAGGAGGAGGAGTAG
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Synonyms
Publications