NO15G02460, NO15G02460 (gene) Nannochloropsis oceanica

Overview
NameNO15G02460
Unique NameNO15G02460
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1527
Alignment locationchr15:674855..676381 +

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Properties
Property NameValue
DescriptionRibosomal protein l22
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:674855..676381 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0005198structural molecule activity
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR002671Ribosomal_L22e
Homology
[Close]
BLAST of NO15G02460 vs. NCBI_GenBank
Match: XP_005852758.1 (large subunit ribosomal protein L22e [Nannochloropsis gaditana CCMP526] >EKU23074.1 large subunit ribosomal protein L22e [Nannochloropsis gaditana CCMP526] >EWM22321.1 ribosomal protein l22 [Nannochloropsis gaditana])

HSP 1 Score: 208.4 bits (529), Expect = 1.300e-50
Identity = 102/125 (81.60%), Postives = 114/125 (91.20%), Query Frame = 0 
Query:    1 MAPTKVGAKGKKGGKKNLVKYTIDCNQPVDDKVLDMGTFEKFLKDRIKVNGKAGVLGDSVTVGRDKSKIQVTAELPFSKRYLKYLTKKHLKKQQLRDYLHVVATNKQTYELKYFSVQDEGGDDDE 126
            MAPTK+GAKG+KG KKN VK+TIDC+ PV D VLDM  FEKFLKDRIKVNGKAGVLGD+V V R+KSKIQVTAELPFSKRYLKYLTKKHLKKQQLRDY+ VVATNKQT+ELKY++V DEGG+D+E
Sbjct:    1 MAPTKLGAKGRKGSKKNQVKFTIDCSDPVKDGVLDMANFEKFLKDRIKVNGKAGVLGDAVAVAREKSKIQVTAELPFSKRYLKYLTKKHLKKQQLRDYMRVVATNKQTFELKYYTVTDEGGEDEE 125
[Close]
BLAST of NO15G02460 vs. NCBI_GenBank
Match: OWZ06313.1 (60S ribosomal protein L22 [Phytophthora megakarya])

HSP 1 Score: 168.3 bits (425), Expect = 1.500e-38
Identity = 85/125 (68.00%), Postives = 101/125 (80.80%), Query Frame = 0 
Query:    1 MAPTKVGAKGKKGGKKNLVKYTIDCNQPVDDKVLDMGTFEKFLKDRIKVNGKAGVLGDSVTVGRDKSKIQVTAELPFSKRYLKYLTKKHLKKQQLRDYLHVVATNKQTYELKYFSVQDEGGDDDE 126
            MAP     KGKK  KKNL+K+TIDC  PVDD VLD  +FEKFL DRIKV+GK GVLGD+V + R+K+K+QV A  PFSKRYLKYLTKK+LKKQQLRDYLHV+A++K TYEL+YF++ D G D DE
Sbjct:    1 MAPAH---KGKKISKKNLLKFTIDCTIPVDDHVLDPASFEKFLHDRIKVDGKTGVLGDAVRITREKTKLQVVAVPPFSKRYLKYLTKKYLKKQQLRDYLHVIASDKNTYELRYFNIHDAGNDADE 122
[Close]
BLAST of NO15G02460 vs. NCBI_GenBank
Match: XP_024573708.1 (60s ribosomal protein l22 [Plasmopara halstedii] >CEG37339.1 60s ribosomal protein l22 [Plasmopara halstedii])

HSP 1 Score: 167.5 bits (423), Expect = 2.600e-38
Identity = 83/125 (66.40%), Postives = 101/125 (80.80%), Query Frame = 0 
Query:    1 MAPTKVGAKGKKGGKKNLVKYTIDCNQPVDDKVLDMGTFEKFLKDRIKVNGKAGVLGDSVTVGRDKSKIQVTAELPFSKRYLKYLTKKHLKKQQLRDYLHVVATNKQTYELKYFSVQDEGGDDDE 126
            MAP  +  KGKK  KK L+K+TIDC  PVDD VLD  +FEKFL DRIK+NGK GVLG+SV + R+K+K+Q+ A  PFSKRYLKYLTKK+LKKQQLRDYLHV+A++K TYEL+YF++ D G D DE
Sbjct:    1 MAP--IQQKGKKISKKQLLKFTIDCTIPVDDHVLDPASFEKFLHDRIKINGKTGVLGESVKITREKTKLQIVAMPPFSKRYLKYLTKKYLKKQQLRDYLHVIASDKSTYELRYFNIHDAGNDADE 123
[Close]
BLAST of NO15G02460 vs. NCBI_GenBank
Match: GAX94460.1 (60S ribosomal protein L22, putative [Pythium insidiosum])

HSP 1 Score: 167.5 bits (423), Expect = 2.600e-38
Identity = 82/117 (70.09%), Postives = 97/117 (82.91%), Query Frame = 0 
Query:   11 KKGGKKNLVKYTIDCNQPVDDKVLDMGTFEKFLKDRIKVNGKAGVLGDSVTVGRDKSKIQVTAELPFSKRYLKYLTKKHLKKQQLRDYLHVVATNKQTYELKYFSVQDEGGD--DDE 126
            KK GKK L+K+TIDC  PVDD VLD  +FEKFL DRIKVNGK GVLGD+V + RDK+K+ + A  PFSKRYLKYLTKK+LKKQQLRDYLHV+A++KQTYEL+YF++ D G D  DDE
Sbjct:    5 KKVGKKQLLKFTIDCTVPVDDHVLDPASFEKFLHDRIKVNGKTGVLGDAVKISRDKTKLHIVAVAPFSKRYLKYLTKKYLKKQQLRDYLHVIASDKQTYELRYFNIHDAGNDAEDDE 121
[Close]
BLAST of NO15G02460 vs. NCBI_GenBank
Match: XP_008903238.1 (hypothetical protein PPTG_10318 [Phytophthora parasitica INRA-310] >ETI50811.1 hypothetical protein F443_05723 [Phytophthora parasitica P1569] >ETK90701.1 hypothetical protein L915_05587 [Phytophthora parasitica] >ETL44109.1 hypothetical protein L916_05528 [Phytophthora parasitica] >ETL97282.1 hypothetical protein L917_05413 [Phytophthora parasitica] >ETM50432.1 hypothetical protein L914_05535 [Phytophthora parasitica] >ETN11439.1 hypothetical protein PPTG_10318 [Phytophthora parasitica INRA-310] >ETO79551.1 hypothetical protein F444_05773 [Phytophthora parasitica P1976] >ETP20600.1 hypothetical protein F441_05730 [Phytophthora parasitica CJ01A1] >ETP48517.1 hypothetical protein F442_05771 [Phytophthora parasitica P10297])

HSP 1 Score: 166.4 bits (420), Expect = 5.700e-38
Identity = 84/125 (67.20%), Postives = 99/125 (79.20%), Query Frame = 0 
Query:    1 MAPTKVGAKGKKGGKKNLVKYTIDCNQPVDDKVLDMGTFEKFLKDRIKVNGKAGVLGDSVTVGRDKSKIQVTAELPFSKRYLKYLTKKHLKKQQLRDYLHVVATNKQTYELKYFSVQDEGGDDDE 126
            MAP     KGKK  KK L+K+TIDC  PVDD VLD  +FEKFL DRIKV GK GVLGD+V + R+K+K+QV A  PFSKRYLKYLTKK+LKKQQLRDYLHV+A++K TYEL+YF++ D G D DE
Sbjct:    1 MAPAN---KGKKVSKKQLLKFTIDCTIPVDDHVLDPASFEKFLHDRIKVGGKTGVLGDAVKITREKTKLQVVAVPPFSKRYLKYLTKKYLKKQQLRDYLHVIASDKNTYELRYFNIHDAGNDADE 122
[Close]
BLAST of NO15G02460 vs. NCBI_GenBank
Match: XP_009514337.1 (hypothetical protein PHYSODRAFT_353368 [Phytophthora sojae] >EGZ27062.1 hypothetical protein PHYSODRAFT_353368 [Phytophthora sojae])

HSP 1 Score: 166.0 bits (419), Expect = 7.500e-38
Identity = 84/125 (67.20%), Postives = 99/125 (79.20%), Query Frame = 0 
Query:    1 MAPTKVGAKGKKGGKKNLVKYTIDCNQPVDDKVLDMGTFEKFLKDRIKVNGKAGVLGDSVTVGRDKSKIQVTAELPFSKRYLKYLTKKHLKKQQLRDYLHVVATNKQTYELKYFSVQDEGGDDDE 126
            MAP     KGKK  KK L+K+TIDC  PVDD VLD  +FEKFL DRIKV GK GVLGD+V + R+K+K+QV A  PFSKRYLKYLTKK+LKKQQLRDYLHV+A++K TYEL+YF++ D G  DDE
Sbjct:    1 MAPAH---KGKKVSKKQLLKFTIDCTIPVDDHVLDPASFEKFLHDRIKVGGKTGVLGDAVKITREKTKLQVVAVPPFSKRYLKYLTKKYLKKQQLRDYLHVIASDKNTYELRYFNIHDAGNADDE 122
[Close]
BLAST of NO15G02460 vs. NCBI_GenBank
Match: XP_002909565.1 (60S ribosomal protein L22, putative [Phytophthora infestans T30-4] >EEY58379.1 60S ribosomal protein L22, putative [Phytophthora infestans T30-4])

HSP 1 Score: 166.0 bits (419), Expect = 7.500e-38
Identity = 84/125 (67.20%), Postives = 99/125 (79.20%), Query Frame = 0 
Query:    1 MAPTKVGAKGKKGGKKNLVKYTIDCNQPVDDKVLDMGTFEKFLKDRIKVNGKAGVLGDSVTVGRDKSKIQVTAELPFSKRYLKYLTKKHLKKQQLRDYLHVVATNKQTYELKYFSVQDEGGDDDE 126
            MAP     KGKK  KK L+K+TIDC  PVDD VLD  +FEKFL DRIKV GK GVLGD+V + R+K+K+QV A  PFSKRYLKYLTKK+LKKQQLRDYLHV+A++K TYEL+YF++ D G D DE
Sbjct:    1 MAPAH---KGKKVSKKQLLKFTIDCTIPVDDHVLDPASFEKFLHDRIKVGGKTGVLGDAVKITREKTKLQVVAVPPFSKRYLKYLTKKYLKKQQLRDYLHVIASDKNTYELRYFNIHDAGNDADE 122
[Close]
BLAST of NO15G02460 vs. NCBI_GenBank
Match: KUF76944.1 (60S ribosomal protein L22 1 [Phytophthora nicotianae] >KUF99755.1 hypothetical protein AM588_10009405 [Phytophthora nicotianae])

HSP 1 Score: 165.6 bits (418), Expect = 9.800e-38
Identity = 81/117 (69.23%), Postives = 96/117 (82.05%), Query Frame = 0 
Query:    9 KGKKGGKKNLVKYTIDCNQPVDDKVLDMGTFEKFLKDRIKVNGKAGVLGDSVTVGRDKSKIQVTAELPFSKRYLKYLTKKHLKKQQLRDYLHVVATNKQTYELKYFSVQDEGGDDDE 126
            KGKK  KK L+K+TIDC  PVDD VLD  +FEKFL DRIKV GK GVLGD+V + R+K+K+QV A  PFSKRYLKYLTKK+LKKQQLRDYLHV+A++K TYEL+YF++ D G D DE
Sbjct:    7 KGKKVSKKQLLKFTIDCTIPVDDHVLDPASFEKFLHDRIKVGGKTGVLGDAVKITREKTKLQVVAVPPFSKRYLKYLTKKYLKKQQLRDYLHVIASDKNTYELRYFNIHDAGNDADE 123
[Close]
BLAST of NO15G02460 vs. NCBI_GenBank
Match: XP_012201509.1 (hypothetical protein SPRG_07329 [Saprolegnia parasitica CBS 223.65] >KDO27700.1 hypothetical protein SPRG_07329 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 162.5 bits (410), Expect = 8.300e-37
Identity = 81/127 (63.78%), Postives = 103/127 (81.10%), Query Frame = 0 
Query:    1 MAPTKVGAKGKKGGKKNLVKYTIDCNQPVDDKVLDMGTFEKFLKDRIKVNGKAGVLGDSVTVGRDKSKIQVTAELPFSKRYLKYLTKKHLKKQQLRDYLHVVATNKQTYELKYFSV---QDEGGDDD 125
            MAP    A   K GKKNL+K+TIDC+ PV+D+VLD+ +FEKFL DRIKVNGK GVLGD VT+ R+K+K+ + A  PFSKRYLKYLTKK+LKKQQLRDYLHV+A++K TYEL+YF++   +DE  D++
Sbjct:    1 MAPATKTA--PKTGKKNLLKFTIDCSTPVEDQVLDVASFEKFLHDRIKVNGKTGVLGDVVTISREKTKLHIAAVAPFSKRYLKYLTKKYLKKQQLRDYLHVIASDKSTYELRYFNIHNNKDEDADEE 125
[Close]
BLAST of NO15G02460 vs. NCBI_GenBank
Match: XP_008608183.1 (50S ribosomal protein L22e [Saprolegnia diclina VS20] >EQC38591.1 50S ribosomal protein L22e [Saprolegnia diclina VS20])

HSP 1 Score: 162.2 bits (409), Expect = 1.100e-36
Identity = 81/127 (63.78%), Postives = 103/127 (81.10%), Query Frame = 0 
Query:    1 MAPTKVGAKGKKGGKKNLVKYTIDCNQPVDDKVLDMGTFEKFLKDRIKVNGKAGVLGDSVTVGRDKSKIQVTAELPFSKRYLKYLTKKHLKKQQLRDYLHVVATNKQTYELKYFSV---QDEGGDDD 125
            MAP    A   K GKKNL+K+TIDC+ PV+D+VLD+ +FEKFL DRIKVNGK GVLGD VT+ R+K+K+ + A  PFSKRYLKYLTKK+LKKQQLRDYLHV+A++K TYEL+YF++   +DE  D++
Sbjct:    1 MAPATKTA--PKTGKKNLLKFTIDCSTPVEDQVLDVASFEKFLHDRIKVNGKTGVLGDVVTISREKTKLHIAAVAPFSKRYLKYLTKKYLKKQQLRDYLHVIASDKSTYELRYFNIHNNKDEEADEE 125
The following BLAST results are available for this feature:
BLAST of NO15G02460 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005852758.11.300e-5081.60large subunit ribosomal protein L22e [Nannochlorop... [more]
OWZ06313.11.500e-3868.0060S ribosomal protein L22 [Phytophthora megakarya][more]
XP_024573708.12.600e-3866.4060s ribosomal protein l22 [Plasmopara halstedii] >... [more]
GAX94460.12.600e-3870.0960S ribosomal protein L22, putative [Pythium insid... [more]
XP_008903238.15.700e-3867.20hypothetical protein PPTG_10318 [Phytophthora para... [more]
XP_009514337.17.500e-3867.20hypothetical protein PHYSODRAFT_353368 [Phytophtho... [more]
XP_002909565.17.500e-3867.2060S ribosomal protein L22, putative [Phytophthora ... [more]
KUF76944.19.800e-3869.2360S ribosomal protein L22 1 [Phytophthora nicotian... [more]
XP_012201509.18.300e-3763.78hypothetical protein SPRG_07329 [Saprolegnia paras... [more]
XP_008608183.11.100e-3663.7850S ribosomal protein L22e [Saprolegnia diclina VS... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL141nonsL141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR006ncniR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR064ngnoR064Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR063ngnoR063Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001316NSK001316Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO15G02460.1NO15G02460.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587948gene_4804Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100118g14gene8117Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO15G02460.1NO15G02460.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO15G02460 ID=NO15G02460|Name=NO15G02460|organism=Nannochloropsis oceanica|type=gene|length=1527bp
GGATGGGCGAAGAGCTATCAATGAGCCCCAGGGCGATACCTTGCCTCTGC
GTCGTGGAGGTGGGTCCTTGCGCTGTGTACGGGTGAAGTAGGAGGAGGCA
TGACGAGCACTGCAAGTACACGGACCTTAGAAACAGGGTGTGGGTGGCTT
CCAGCCTCCCAACCGCTTTTCTTAGGCTGCGTGCGGTGGTGCTCGCTTCT
TCCTCCCCGCCCCCCACCCCTTTCTTTGTTACCCCTTTCTTTGTTCACTC
AGCCCTCATGCACTCTGCTCTTTTCTCTTCTGTTACAGGACTCTTCTGTG
GTATAGCTAGGAGGCAGCAGCTTTAGCAATGGCACCAACGgtgagtgggt
agggtgtggcggcgggacggggggcgatggtgtggagatgatgatgatgc
ctgatgaagactgaacagtatcgagaaaatcctgccaaacgcaaaagtgt
gcgacttgacacatcagagctctgtctagtagatggcatggcaccgcttg
tggtgagggcgaatgctgctgttccggaacgacctctcgttgcccgcctg
atggatttgtatgtgcagcaatgcagagagggagactccatggccgatat
cgcgtgggtgaaatacctcagagcgtgcatctttattttatctctccctc
ggctttatcctgtgcccctcctttatttgaggcgaacttatttcccttcc
ttttcccccctacgggatttcagaagagaggtgttgtttttgtttgtcat
gttttcaaacatcatcatctctttccttccccccaatgtcaacgtctcct
ttgacacgtctcacccaccgccatcactctctccctccccctccctcttc
cagAAGGTCGGTGCGAAGGGCAAGAAAGGTGGAAAGAAGAACCTGGTCAA
GTACACCATCGACTGCAACCAGCCGGTGGACGATAAGGTGCTAGACATGG
GTACCTTCGAGAAGTTCCTTAAGGACCGGATCAAGgtatgctgaatcctc
cctctatcctttttcttttgtcggccttgaacaaagactgtttcaagggg
aatgcagcagtagtcttcattacaaccaatttgcttactccttttctcgt
attcttttccctctctacactagGTGAACGGCAAGGCCGGCGTGCTGGGG
GACTCCGTCACGGTGGGGCGAGACAAGAGCAAGATCCAAGTTACGGCTGA
GCTGCCTTTTTCCAAGCGATACCTTAAGTACCTCACCAAGAAGCACCTGA
AGAAGCAGCAGCTCCGAGACTACCTGCACGTTGTGGCGACGAACAAGCAG
ACGTACGAGTTGAAGTACTTCTCCGTGCAGGACGAAGGGGGGGACGATGA
CGAGTAGACCAGGACGGCAGTCTTAGTGGGAGGGTGCTTGATGGAGGAGG
AAATGGGCAGGGAGGGAGGGAGGGAGGGAGGATTTGGGGATGAAGAATGG
TGTTTGCTTGTTCGTTCAGGAGACGTAGGTGGGTGGAATCGAGGAAGAAA
AAAAATCCGAACGAGGCGCAGGCTCTG
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protein sequence of NO15G02460.1

>NO15G02460.1-protein ID=NO15G02460.1-protein|Name=NO15G02460.1|organism=Nannochloropsis oceanica|type=polypeptide|length=126bp
MAPTKVGAKGKKGGKKNLVKYTIDCNQPVDDKVLDMGTFEKFLKDRIKVN
GKAGVLGDSVTVGRDKSKIQVTAELPFSKRYLKYLTKKHLKKQQLRDYLH
VVATNKQTYELKYFSVQDEGGDDDE*
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Synonyms
Publications