NO15G02460.1, NO15G02460.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G02460.1
Unique NameNO15G02460.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length876
Alignment locationchr15:674855..676381 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:674855..676381 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO15G02460.1 vs.
Match: XP_005852758.1 (large subunit ribosomal protein L22e [Nannochloropsis gaditana CCMP526]; EKU23074.1 large subunit ribosomal protein L22e [Nannochloropsis gaditana CCMP526]; EWM22321.1 ribosomal protein l22 [Nannochloropsis gaditana])

HSP 1 Score: 208.4 bits (529), Expect = 1.300e-50
Identity = 102/125 (81.60%), Postives = 114/125 (91.20%), Query Frame = 0 
Query:    1 MAPTKVGAKGKKGGKKNLVKYTIDCNQPVDDKVLDMGTFEKFLKDRIKVNGKAGVLGDSVTVGRDKSKIQVTAELPFSKRYLKYLTKKHLKKQQLRDYLHVVATNKQTYELKYFSVQDEGGDDDE 126
            MAPTK+GAKG+KG KKN VK+TIDC+ PV D VLDM  FEKFLKDRIKVNGKAGVLGD+V V R+KSKIQVTAELPFSKRYLKYLTKKHLKKQQLRDY+ VVATNKQT+ELKY++V DEGG+D+E
Sbjct:    1 MAPTKLGAKGRKGSKKNQVKFTIDCSDPVKDGVLDMANFEKFLKDRIKVNGKAGVLGDAVAVAREKSKIQVTAELPFSKRYLKYLTKKHLKKQQLRDYMRVVATNKQTFELKYYTVTDEGGEDEE 125
The following BLAST results are available for this feature:
BLAST of NO15G02460.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005852758.11.300e-5081.60large subunit ribosomal protein L22e [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G02460NO15G02460Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G02460.1NO15G02460.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G02460.1.cds1NO15G02460.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G02460.1.cds2NO15G02460.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G02460.1.cds3NO15G02460.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G02460.1 ID=NO15G02460.1|Name=NO15G02460.1|organism=Nannochloropsis oceanica|type=mRNA|length=876bp
GGATGGGCGAAGAGCTATCAATGAGCCCCAGGGCGATACCTTGCCTCTGC
GTCGTGGAGGTGGGTCCTTGCGCTGTGTACGGGTGAAGTAGGAGGAGGCA
TGACGAGCACTGCAAGTACACGGACCTTAGAAACAGGGTGTGGGTGGCTT
CCAGCCTCCCAACCGCTTTTCTTAGGCTGCGTGCGGTGGTGCTCGCTTCT
TCCTCCCCGCCCCCCACCCCTTTCTTTGTTACCCCTTTCTTTGTTCACTC
AGCCCTCATGCACTCTGCTCTTTTCTCTTCTGTTACAGGACTCTTCTGTG
GTATAGCTAGGAGGCAGCAGCTTTAGCAATGGCACCAACGAAGGTCGGTG
CGAAGGGCAAGAAAGGTGGAAAGAAGAACCTGGTCAAGTACACCATCGAC
TGCAACCAGCCGGTGGACGATAAGGTGCTAGACATGGGTACCTTCGAGAA
GTTCCTTAAGGACCGGATCAAGGTGAACGGCAAGGCCGGCGTGCTGGGGG
ACTCCGTCACGGTGGGGCGAGACAAGAGCAAGATCCAAGTTACGGCTGAG
CTGCCTTTTTCCAAGCGATACCTTAAGTACCTCACCAAGAAGCACCTGAA
GAAGCAGCAGCTCCGAGACTACCTGCACGTTGTGGCGACGAACAAGCAGA
CGTACGAGTTGAAGTACTTCTCCGTGCAGGACGAAGGGGGGGACGATGAC
GAGTAGACCAGGACGGCAGTCTTAGTGGGAGGGTGCTTGATGGAGGAGGA
AATGGGCAGGGAGGGAGGGAGGGAGGGAGGATTTGGGGATGAAGAATGGT
GTTTGCTTGTTCGTTCAGGAGACGTAGGTGGGTGGAATCGAGGAAGAAAA
AAAATCCGAACGAGGCGCAGGCTCTG
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protein sequence of NO15G02460.1

>NO15G02460.1-protein ID=NO15G02460.1-protein|Name=NO15G02460.1|organism=Nannochloropsis oceanica|type=polypeptide|length=126bp
MAPTKVGAKGKKGGKKNLVKYTIDCNQPVDDKVLDMGTFEKFLKDRIKVN
GKAGVLGDSVTVGRDKSKIQVTAELPFSKRYLKYLTKKHLKKQQLRDYLH
VVATNKQTYELKYFSVQDEGGDDDE*
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mRNA from alignment at chr15:674855..676381+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G02460.1 ID=NO15G02460.1|Name=NO15G02460.1|organism=Nannochloropsis oceanica|type=mRNA|length=1527bp|location=Sequence derived from alignment at chr15:674855..676381+ (Nannochloropsis oceanica)
GGATGGGCGAAGAGCTATCAATGAGCCCCAGGGCGATACCTTGCCTCTGC
GTCGTGGAGGTGGGTCCTTGCGCTGTGTACGGGTGAAGTAGGAGGAGGCA
TGACGAGCACTGCAAGTACACGGACCTTAGAAACAGGGTGTGGGTGGCTT
CCAGCCTCCCAACCGCTTTTCTTAGGCTGCGTGCGGTGGTGCTCGCTTCT
TCCTCCCCGCCCCCCACCCCTTTCTTTGTTACCCCTTTCTTTGTTCACTC
AGCCCTCATGCACTCTGCTCTTTTCTCTTCTGTTACAGGACTCTTCTGTG
GTATAGCTAGGAGGCAGCAGCTTTAGCAATGGCACCAACGGTGAGTGGGT
AGGGTGTGGCGGCGGGACGGGGGGCGATGGTGTGGAGATGATGATGATGC
CTGATGAAGACTGAACAGTATCGAGAAAATCCTGCCAAACGCAAAAGTGT
GCGACTTGACACATCAGAGCTCTGTCTAGTAGATGGCATGGCACCGCTTG
TGGTGAGGGCGAATGCTGCTGTTCCGGAACGACCTCTCGTTGCCCGCCTG
ATGGATTTGTATGTGCAGCAATGCAGAGAGGGAGACTCCATGGCCGATAT
CGCGTGGGTGAAATACCTCAGAGCGTGCATCTTTATTTTATCTCTCCCTC
GGCTTTATCCTGTGCCCCTCCTTTATTTGAGGCGAACTTATTTCCCTTCC
TTTTCCCCCCTACGGGATTTCAGAAGAGAGGTGTTGTTTTTGTTTGTCAT
GTTTTCAAACATCATCATCTCTTTCCTTCCCCCCAATGTCAACGTCTCCT
TTGACACGTCTCACCCACCGCCATCACTCTCTCCCTCCCCCTCCCTCTTC
CAGAAGGTCGGTGCGAAGGGCAAGAAAGGTGGAAAGAAGAACCTGGTCAA
GTACACCATCGACTGCAACCAGCCGGTGGACGATAAGGTGCTAGACATGG
GTACCTTCGAGAAGTTCCTTAAGGACCGGATCAAGGTATGCTGAATCCTC
CCTCTATCCTTTTTCTTTTGTCGGCCTTGAACAAAGACTGTTTCAAGGGG
AATGCAGCAGTAGTCTTCATTACAACCAATTTGCTTACTCCTTTTCTCGT
ATTCTTTTCCCTCTCTACACTAGGTGAACGGCAAGGCCGGCGTGCTGGGG
GACTCCGTCACGGTGGGGCGAGACAAGAGCAAGATCCAAGTTACGGCTGA
GCTGCCTTTTTCCAAGCGATACCTTAAGTACCTCACCAAGAAGCACCTGA
AGAAGCAGCAGCTCCGAGACTACCTGCACGTTGTGGCGACGAACAAGCAG
ACGTACGAGTTGAAGTACTTCTCCGTGCAGGACGAAGGGGGGGACGATGA
CGAGTAGACCAGGACGGCAGTCTTAGTGGGAGGGTGCTTGATGGAGGAGG
AAATGGGCAGGGAGGGAGGGAGGGAGGGAGGATTTGGGGATGAAGAATGG
TGTTTGCTTGTTCGTTCAGGAGACGTAGGTGGGTGGAATCGAGGAAGAAA
AAAAATCCGAACGAGGCGCAGGCTCTG
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Coding sequence (CDS) from alignment at chr15:674855..676381+

>NO15G02460.1 ID=NO15G02460.1|Name=NO15G02460.1|organism=Nannochloropsis oceanica|type=CDS|length=378bp|location=Sequence derived from alignment at chr15:674855..676381+ (Nannochloropsis oceanica)
ATGGCACCAACGAAGGTCGGTGCGAAGGGCAAGAAAGGTGGAAAGAAGAA
CCTGGTCAAGTACACCATCGACTGCAACCAGCCGGTGGACGATAAGGTGC
TAGACATGGGTACCTTCGAGAAGTTCCTTAAGGACCGGATCAAGGTGAAC
GGCAAGGCCGGCGTGCTGGGGGACTCCGTCACGGTGGGGCGAGACAAGAG
CAAGATCCAAGTTACGGCTGAGCTGCCTTTTTCCAAGCGATACCTTAAGT
ACCTCACCAAGAAGCACCTGAAGAAGCAGCAGCTCCGAGACTACCTGCAC
GTTGTGGCGACGAACAAGCAGACGTACGAGTTGAAGTACTTCTCCGTGCA
GGACGAAGGGGGGGACGATGACGAGTAG
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Synonyms
Publications