NO15G01990, NO15G01990 (gene) Nannochloropsis oceanica

Overview
NameNO15G01990
Unique NameNO15G01990
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length414
Alignment locationchr15:556523..556936 -

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Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:556523..556936 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR017136UCP037205
Homology
BLAST of NO15G01990 vs. NCBI_GenBank
Match: EWM22400.1 (hypothetical protein Naga_100067g22 [Nannochloropsis gaditana])

HSP 1 Score: 117.5 bits (293), Expect = 3.300e-23
Identity = 47/61 (77.05%), Postives = 55/61 (90.16%), Query Frame = 0
Query:   77 LSLKPCDLCHRDRDLLIRCQIDTSSNWFMVCGKCWKDVSGGVADGDEAHPYYRYGGLWKAR 138
            LSLKPC +C+RD+DLLIRCQ+D+S  W MVCGKCW++VSGGV DGD AHP+YRYGGLWKAR
Sbjct:  129 LSLKPCVICNRDQDLLIRCQVDSSLEWKMVCGKCWREVSGGVVDGDAAHPHYRYGGLWKAR 189          
BLAST of NO15G01990 vs. NCBI_GenBank
Match: EJK69807.1 (hypothetical protein THAOC_08899 [Thalassiosira oceanica])

HSP 1 Score: 101.7 bits (252), Expect = 1.900e-18
Identity = 40/58 (68.97%), Postives = 45/58 (77.59%), Query Frame = 0
Query:   80 KPCDLCHRDRDLLIRCQIDTSSNWFMVCGKCWKDVSGGVADGDEAHPYYRYGGLWKAR 138
            K C +C +  DLLIRCQID S  W M CGKCW DVSGGV DGD++HP+YRYGGLWK R
Sbjct:  628 KQCTICGKSVDLLIRCQIDESQTWHMSCGKCWNDVSGGVVDGDDSHPHYRYGGLWKNR 685          
BLAST of NO15G01990 vs. NCBI_GenBank
Match: OLQ09640.1 (Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE [Symbiodinium microadriaticum])

HSP 1 Score: 101.3 bits (251), Expect = 2.500e-18
Identity = 39/58 (67.24%), Postives = 45/58 (77.59%), Query Frame = 0
Query:   80 KPCDLCHRDRDLLIRCQIDTSSNWFMVCGKCWKDVSGGVADGDEAHPYYRYGGLWKAR 138
            KPC LC R  DLL+RC+ID S  W M+CG+CWK  SGGV DGD +HP+YRYGGLWK R
Sbjct:  339 KPCTLCQRPVDLLVRCRIDISQKWHMLCGRCWKKASGGVPDGDASHPHYRYGGLWKNR 396          
BLAST of NO15G01990 vs. NCBI_GenBank
Match: XP_002289258.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED92795.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 100.5 bits (249), Expect = 4.200e-18
Identity = 39/58 (67.24%), Postives = 45/58 (77.59%), Query Frame = 0
Query:   80 KPCDLCHRDRDLLIRCQIDTSSNWFMVCGKCWKDVSGGVADGDEAHPYYRYGGLWKAR 138
            K C +C++  +LLIRC  D+S  W MVCGKCW D+SGGV DGD AHPYYRYGGLWK R
Sbjct:  168 KQCTICNKSVNLLIRCTYDSSEEWGMVCGKCWNDISGGVVDGDAAHPYYRYGGLWKNR 225          
BLAST of NO15G01990 vs. NCBI_GenBank
Match: XP_002180341.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC48532.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 99.8 bits (247), Expect = 7.200e-18
Identity = 40/62 (64.52%), Postives = 45/62 (72.58%), Query Frame = 0
Query:   76 SLSLKPCDLCHRDRDLLIRCQIDTSSNWFMVCGKCWKDVSGGVADGDEAHPYYRYGGLWKAR 138
            S   K C  CH+  DLLIRC +D S +W MVCG+CWK VSGGV DGD  HP+YRYGGLWK R
Sbjct:  302 SYGRKECTQCHQSVDLLIRCVVDASGDWEMVCGRCWKSVSGGVVDGDADHPHYRYGGLWKNR 363          
BLAST of NO15G01990 vs. NCBI_GenBank
Match: XP_002180346.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC48537.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 99.8 bits (247), Expect = 7.200e-18
Identity = 40/62 (64.52%), Postives = 45/62 (72.58%), Query Frame = 0
Query:   76 SLSLKPCDLCHRDRDLLIRCQIDTSSNWFMVCGKCWKDVSGGVADGDEAHPYYRYGGLWKAR 138
            S   K C  CH+  DLLIRC +D S +W MVCG+CWK VSGGV DGD  HP+YRYGGLWK R
Sbjct:  142 SYGRKECTQCHQSVDLLIRCVVDASGDWEMVCGRCWKSVSGGVVDGDADHPHYRYGGLWKNR 203          
BLAST of NO15G01990 vs. NCBI_GenBank
Match: GAX20478.1 (hypothetical protein FisN_22Hu046 [Fistulifera solaris])

HSP 1 Score: 97.4 bits (241), Expect = 3.600e-17
Identity = 39/58 (67.24%), Postives = 43/58 (74.14%), Query Frame = 0
Query:   80 KPCDLCHRDRDLLIRCQIDTSSNWFMVCGKCWKDVSGGVADGDEAHPYYRYGGLWKAR 138
            K CD+C +  +LLIRC ID S  W MVCGKCW  VSGGV DGD  HP+YRYGGLWK R
Sbjct:  162 KSCDVCQKSVNLLIRCTIDASGEWKMVCGKCWHSVSGGVVDGDANHPHYRYGGLWKNR 219          
BLAST of NO15G01990 vs. NCBI_GenBank
Match: PQE32660.1 (hypothetical protein CJF32_00004175 [Rutstroemia sp. NJR-2017a WRK4])

HSP 1 Score: 96.7 bits (239), Expect = 6.100e-17
Identity = 40/57 (70.18%), Postives = 42/57 (73.68%), Query Frame = 0
Query:   80 KPCDLCHRDRDLLIRCQIDTSSNWFMVC-GKCWKDVSGGVADGDEAHPYYRYGGLWK 136
            KPC LCH  RD+LIRCQID S  W  VC GKCW  VSGG  DGD AHP YRYGG+WK
Sbjct:   56 KPCSLCHTSRDVLIRCQIDESQKWHFVCTGKCWTRVSGGKVDGDAAHPRYRYGGMWK 112          
BLAST of NO15G01990 vs. NCBI_GenBank
Match: XP_001692918.1 (predicted protein [Chlamydomonas reinhardtii])

HSP 1 Score: 95.9 bits (237), Expect = 1.000e-16
Identity = 36/56 (64.29%), Postives = 40/56 (71.43%), Query Frame = 0
Query:   80 KPCDLCHRDRDLLIRCQIDTSSNWFMVCGKCWKDVSGGVADGDEAHPYYRYGGLWK 136
            KPC LC R RDLL+RCQ+D S  W M CGKCW   SGG  DG  + P+YRYGGLWK
Sbjct:   40 KPCSLCSRSRDLLVRCQVDASGTWHMACGKCWMAASGGAVDGSASKPHYRYGGLWK 95          
BLAST of NO15G01990 vs. NCBI_GenBank
Match: CCD49009.1 (hypothetical protein BofuT4_P028850.1 [Botrytis cinerea T4])

HSP 1 Score: 95.9 bits (237), Expect = 1.000e-16
Identity = 38/57 (66.67%), Postives = 43/57 (75.44%), Query Frame = 0
Query:   80 KPCDLCHRDRDLLIRCQIDTSSNWFMVC-GKCWKDVSGGVADGDEAHPYYRYGGLWK 136
            KPC +CH  RD+LIRCQID +  W  VC G+CWKDVSGG  DGD  HP YRYGG+WK
Sbjct:  111 KPCTICHTPRDVLIRCQIDDTKKWHFVCTGRCWKDVSGGKVDGDGKHPAYRYGGMWK 167          
The following BLAST results are available for this feature:
BLAST of NO15G01990 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM22400.13.300e-2377.05hypothetical protein Naga_100067g22 [Nannochlorops... [more]
EJK69807.11.900e-1868.97hypothetical protein THAOC_08899 [Thalassiosira oc... [more]
OLQ09640.12.500e-1867.24Ubiquinone/menaquinone biosynthesis C-methyltransf... [more]
XP_002289258.14.200e-1867.24predicted protein [Thalassiosira pseudonana CCMP13... [more]
XP_002180341.17.200e-1864.52predicted protein [Phaeodactylum tricornutum CCAP ... [more]
XP_002180346.17.200e-1864.52predicted protein [Phaeodactylum tricornutum CCAP ... [more]
GAX20478.13.600e-1767.24hypothetical protein FisN_22Hu046 [Fistulifera sol... [more]
PQE32660.16.100e-1770.18hypothetical protein CJF32_00004175 [Rutstroemia s... [more]
XP_001692918.11.000e-1664.29predicted protein [Chlamydomonas reinhardtii][more]
CCD49009.11.000e-1666.67hypothetical protein BofuT4_P028850.1 [Botrytis ci... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL142nonsL142Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR006ncniR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR063ngnoR063Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001413NSK001413Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO15G01990.1NO15G01990.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587753gene_4750Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100067g22gene8043Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO15G01990.1NO15G01990.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO15G01990 ID=NO15G01990|Name=NO15G01990|organism=Nannochloropsis oceanica|type=gene|length=414bp
ATGATAGCAGCAAGCGGAAGCAATGACGACGATGGACAACTCCCACAAAC
CACCGACATCGGAGCAGTATCACCACCCCCTCCCACATTTTTTGCCGCGA
CCGCCAGCAACGACGACCATGCATCCCCGCCCTCCGCACCTCCTGAGGCA
CTAATGGAGAAGGAGCTAAAAAGGCTCCGCAAGAAGGCAGCCAAAGAGGC
AAGGCGGGAGAAACGGGAAAGCAAAAGCCTCTCGCTCAAGCCCTGCGATT
TGTGTCATCGGGATCGCGACCTTTTGATCCGATGCCAAATTGACACGTCT
TCAAATTGGTTTATGGTCTGTGGAAAATGCTGGAAGGACGTGAGCGGTGG
AGTAGCCGATGGTGATGAGGCCCACCCATATTACCGATATGGCGGGCTCT
GGAAAGCAAGGTGA
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protein sequence of NO15G01990.1

>NO15G01990.1-protein ID=NO15G01990.1-protein|Name=NO15G01990.1|organism=Nannochloropsis oceanica|type=polypeptide|length=138bp
MIAASGSNDDDGQLPQTTDIGAVSPPPPTFFAATASNDDHASPPSAPPEA
LMEKELKRLRKKAAKEARREKRESKSLSLKPCDLCHRDRDLLIRCQIDTS
SNWFMVCGKCWKDVSGGVADGDEAHPYYRYGGLWKAR*
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Synonyms
Publications