NO15G01990.1, NO15G01990.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G01990.1
Unique NameNO15G01990.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length414
Alignment locationchr15:556523..556936 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:556523..556936 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO15G01990.1 vs.
Match: EWM22400.1 (hypothetical protein Naga_100067g22 [Nannochloropsis gaditana])

HSP 1 Score: 146.4 bits (368), Expect = 6.700e-32
Identity = 75/138 (54.35%), Postives = 97/138 (70.29%), Query Frame = 0 
Query:    4 ASGSNDDDGQLPQTTDIGAVSPPPPTFFAATASNDDHASPP----SAPPEALMEKELKRLRKKAAKEARREKRESKSLSLKPCDLCHRDRDLLIRCQIDTSSNWFMVCGKCWKDVSGGVADGDEAHPYYRYGGLWKAR 138
            +SG+NDD  +  + +   A   P  +   +    +D   P     + PP  + EKE+K++RKKAAK A+REKRES  LSLKPC +C+RD+DLLIRCQ+D+S  W MVCGKCW++VSGGV DGD AHP+YRYGGLWKAR
Sbjct:   54 SSGTNDDGRR--RASFSSAEHLPASSITTSAHGMEDQHKPAEEKGALPPPVVPEKEMKKMRKKAAKAAKREKRESNKLSLKPCVICNRDQDLLIRCQVDSSLEWKMVCGKCWREVSGGVVDGDAAHPHYRYGGLWKAR 189
The following BLAST results are available for this feature:
BLAST of NO15G01990.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22400.16.700e-3254.35hypothetical protein Naga_100067g22 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G01990NO15G01990Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G01990.1NO15G01990.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G01990.1.cds1NO15G01990.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G01990.1 ID=NO15G01990.1|Name=NO15G01990.1|organism=Nannochloropsis oceanica|type=mRNA|length=414bp
ATGATAGCAGCAAGCGGAAGCAATGACGACGATGGACAACTCCCACAAAC
CACCGACATCGGAGCAGTATCACCACCCCCTCCCACATTTTTTGCCGCGA
CCGCCAGCAACGACGACCATGCATCCCCGCCCTCCGCACCTCCTGAGGCA
CTAATGGAGAAGGAGCTAAAAAGGCTCCGCAAGAAGGCAGCCAAAGAGGC
AAGGCGGGAGAAACGGGAAAGCAAAAGCCTCTCGCTCAAGCCCTGCGATT
TGTGTCATCGGGATCGCGACCTTTTGATCCGATGCCAAATTGACACGTCT
TCAAATTGGTTTATGGTCTGTGGAAAATGCTGGAAGGACGTGAGCGGTGG
AGTAGCCGATGGTGATGAGGCCCACCCATATTACCGATATGGCGGGCTCT
GGAAAGCAAGGTGA
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protein sequence of NO15G01990.1

>NO15G01990.1-protein ID=NO15G01990.1-protein|Name=NO15G01990.1|organism=Nannochloropsis oceanica|type=polypeptide|length=138bp
MIAASGSNDDDGQLPQTTDIGAVSPPPPTFFAATASNDDHASPPSAPPEA
LMEKELKRLRKKAAKEARREKRESKSLSLKPCDLCHRDRDLLIRCQIDTS
SNWFMVCGKCWKDVSGGVADGDEAHPYYRYGGLWKAR*
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mRNA from alignment at chr15:556523..556936-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G01990.1 ID=NO15G01990.1|Name=NO15G01990.1|organism=Nannochloropsis oceanica|type=mRNA|length=414bp|location=Sequence derived from alignment at chr15:556523..556936- (Nannochloropsis oceanica)
ATGATAGCAGCAAGCGGAAGCAATGACGACGATGGACAACTCCCACAAAC
CACCGACATCGGAGCAGTATCACCACCCCCTCCCACATTTTTTGCCGCGA
CCGCCAGCAACGACGACCATGCATCCCCGCCCTCCGCACCTCCTGAGGCA
CTAATGGAGAAGGAGCTAAAAAGGCTCCGCAAGAAGGCAGCCAAAGAGGC
AAGGCGGGAGAAACGGGAAAGCAAAAGCCTCTCGCTCAAGCCCTGCGATT
TGTGTCATCGGGATCGCGACCTTTTGATCCGATGCCAAATTGACACGTCT
TCAAATTGGTTTATGGTCTGTGGAAAATGCTGGAAGGACGTGAGCGGTGG
AGTAGCCGATGGTGATGAGGCCCACCCATATTACCGATATGGCGGGCTCT
GGAAAGCAAGGTGA
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Coding sequence (CDS) from alignment at chr15:556523..556936-

>NO15G01990.1 ID=NO15G01990.1|Name=NO15G01990.1|organism=Nannochloropsis oceanica|type=CDS|length=414bp|location=Sequence derived from alignment at chr15:556523..556936- (Nannochloropsis oceanica)
ATGATAGCAGCAAGCGGAAGCAATGACGACGATGGACAACTCCCACAAAC
CACCGACATCGGAGCAGTATCACCACCCCCTCCCACATTTTTTGCCGCGA
CCGCCAGCAACGACGACCATGCATCCCCGCCCTCCGCACCTCCTGAGGCA
CTAATGGAGAAGGAGCTAAAAAGGCTCCGCAAGAAGGCAGCCAAAGAGGC
AAGGCGGGAGAAACGGGAAAGCAAAAGCCTCTCGCTCAAGCCCTGCGATT
TGTGTCATCGGGATCGCGACCTTTTGATCCGATGCCAAATTGACACGTCT
TCAAATTGGTTTATGGTCTGTGGAAAATGCTGGAAGGACGTGAGCGGTGG
AGTAGCCGATGGTGATGAGGCCCACCCATATTACCGATATGGCGGGCTCT
GGAAAGCAAGGTGA
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Synonyms
Publications