NO15G00290, NO15G00290 (gene) Nannochloropsis oceanica

Overview
NameNO15G00290
Unique NameNO15G00290
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1837
Alignment locationchr15:91961..93797 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:91961..93797 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO15G00290 vs. NCBI_GenBank
Match: XP_005853630.1 (hypothetical protein NGA_0480500 [Nannochloropsis gaditana CCMP526] >EKU22730.1 hypothetical protein NGA_0480500 [Nannochloropsis gaditana CCMP526] >EWM20803.1 hypothetical protein Naga_101570g1 [Nannochloropsis gaditana])

HSP 1 Score: 165.6 bits (418), Expect = 1.600e-37
Identity = 77/118 (65.25%), Postives = 93/118 (78.81%), Query Frame = 0 
Query:   92 FLYQRSRRQADLIEDGYACFVTGECAACSADEMSEPYCQESKRRAEVTCEREENIHGAKQIKAITIFDACTHTPSDDLTDVLRFQALMAIVGGLALYGARHQKLKHLTLYERRAGVRR 210
            FLY++ + QA+L+++GYACFVTGEC ACSA+EMS+ +CQ SKRR EVTCEREE + GA  ++  T + AC  T SD L +VLRFQA MA VGGLA YGARHQK+KHLTLYERR G  R
Sbjct:   75 FLYEQMKSQAELLKEGYACFVTGECIACSAEEMSQAFCQTSKRREEVTCEREEVVDGATHMRTYTTYSACARTSSDSLVEVLRFQAAMATVGGLAFYGARHQKVKHLTLYERRTGAGR 192
The following BLAST results are available for this feature:
BLAST of NO15G00290 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853630.11.600e-3765.25hypothetical protein NGA_0480500 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR006ncniR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR095ngnoR095Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO15G00290.1NO15G00290.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587045gene_4580Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_101570g1gene9608Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO15G00290.1NO15G00290.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO15G00290 ID=NO15G00290|Name=NO15G00290|organism=Nannochloropsis oceanica|type=gene|length=1837bp
CAGCTATCACTTTAATCGACCAGGTGAGTTCCTGCTCGCCCGAGTTTCTT
TCAGTTTCAGCGATTGCCTCCCTCCCTCCCTCCCTCCTTCCCTCCCTCCC
TCCTCCCTCCCCTGCTTTGTACCGTACCCACCAACCCCACACAACCCCCA
AAGCTCGGGTACACGCTTTTTGATTGTATTGGCACATAGTGCCAACCATG
ATTCCCCTATTCGAGAACAATTGCTTCCCCTCTCGCCTTGTCTTGCTCCC
TTTCCCCTCTTTCAGACGCATAAGAAGGGGAGGCTTGGCCCCCAGCACCA
ACGTCACTTGTCCTCCTCTTCTATATCATGTATCATTCCTTTAACCCTTT
CCTCTCCTCAATCCTCATCTTCGCTGTCAGTCCAGACACCAAGCAATTCC
GCACATGAGAAGAAAAGGAATGGGCCGTTCTTCACGGTCGACACCTTTCC
TCTCACCCTCCTTCCTCCTCCTCCAACTCCTCTTCGTTGTCTCCCTCCTC
CTCCTTCCCCTTGGTGGTGAAAGCGACGGCATCACCATCACAAGGGACGA
CGACGATGTTCAGGAAGAAGCAGGGCGAGCGGGAATGGAGGAGGCAACGA
AGGAGGAGGAGGGGAAGCAACAGCGACTAGAGCAACGTCAGAAGCAGCGG
CGGAAGAAAGACGACAAGTCCGATCTATTTTTATATCAACGGTCAAGACG
CCAGGCGGATTTGATCGAGGACGGGTACGCGTGTTTCGTGACGGGGGAAT
GCGCGGCCTGCTCGGCGGATGAAATGgtgaggcagagaggaggggaggga
gggagggagggagggagggagggggagagggaatgggtatgcagacttta
cattcgttcatcttttgatgcacacatgaatgcatgtaattgacacatga
atgcatgtgattggaacaaaggaggataggagggagtacagggaggaaga
gaagtaggactactttcattgcaccgtcatctgatctgtattcttcgtgt
tgtttttaaatatttgaatatggtcacaattatactagtactctaaaccc
taattagaattttattgacatttttcacaattataaatcgtcacactata
atcacaacagAGTGAGCCCTATTGTCAAGAAAGCAAACGCCGGGCCGAGG
TGACCTGCGAAAGGGAAGAGAACATCCACGGTGgtacgtgctttcctccc
tccctccctccctccctccctccctccctccctccctcactccttcctat
ttcaaacccttccctccctccaaacctccctccccacctcattccccgca
gCCAAGCAGATCAAGGCCATAACCATATTTGATGCCTGTACCCACACCCC
TTCCGACGATCTAACGGACGTCTTGCGTTTCCAAGCCCTCATGGCCATCG
TGGGGGGACTCGCCCTGTACGGTGCACGACATCAGAAGTTGAAGCACTTG
ACGCTCTATGAAAGGAGGGCAGGCGTGAGGAGATAGAAACGAGACACGGA
TTCCTCCCTTCCTTCCCCCCTTCCCTTCTTCCCTTCCTGAGGGGGAAGGC
TCTGCCTGTGGTGCCCGCCAGCAATGATGCCCAAAATGGGAGCAAGGGAC
ATGTGGTAGATGGATGGAGTACGACAAACACCTCTAGTGCGTAGTTGGGG
TGGTGGGATTTTATATAGAAGGACGGCGTGATCGAGGAGGGGAGAAGAGA
GGGAAGGAGGGAAGGAAGGAGGGAAACTTCCTCTATCCTTGCCTACTGAC
CCGTGGCACAAGACACCTGAAGGTGCGATCTGGGTATTGTGTGAATGAGT
TAAGGAAAAGAGGGAGGGAGGGAGGGAGGGAGGGTTG
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protein sequence of NO15G00290.1

>NO15G00290.1-protein ID=NO15G00290.1-protein|Name=NO15G00290.1|organism=Nannochloropsis oceanica|type=polypeptide|length=210bp
MRRKGMGRSSRSTPFLSPSFLLLQLLFVVSLLLLPLGGESDGITITRDDD
DVQEEAGRAGMEEATKEEEGKQQRLEQRQKQRRKKDDKSDLFLYQRSRRQ
ADLIEDGYACFVTGECAACSADEMSEPYCQESKRRAEVTCEREENIHGAK
QIKAITIFDACTHTPSDDLTDVLRFQALMAIVGGLALYGARHQKLKHLTL
YERRAGVRR*
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Synonyms
Publications