NO15G00290.1, NO15G00290.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G00290.1
Unique NameNO15G00290.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1385
Alignment locationchr15:91961..93797 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:91961..93797 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO15G00290.1 vs.
Match: XP_005853630.1 (hypothetical protein NGA_0480500 [Nannochloropsis gaditana CCMP526]; EKU22730.1 hypothetical protein NGA_0480500 [Nannochloropsis gaditana CCMP526]; EWM20803.1 hypothetical protein Naga_101570g1 [Nannochloropsis gaditana])

HSP 1 Score: 152.5 bits (384), Expect = 1.400e-33
Identity = 85/158 (53.80%), Postives = 108/158 (68.35%), Query Frame = 0 
Query:   54 EEAGRAGMEEATKEEEGKQ--QRLEQRQKQRRKKDDKSDLFLYQRSRRQADLIEDGYACFVTGECAACSADEMSEPYCQESKRRAEVTCEREENIHGAKQIKAITIFDACTHTPSDDLTDVLRFQALMAIVGGLALYGARHQKLKHLTLYERRAGVRR 210
            +EA  A    +T  + GK+  + L         K+ +   FLY++ + QA+L+++GYACFVTGEC ACSA+EMS+ +CQ SKRR EVTCEREE + GA  ++  T + AC  T SD L +VLRFQA MA VGGLA YGARHQK+KHLTLYERR G  R
Sbjct:   35 KEAKEAAEGSSTPMDAGKEHVRPLGLTSTGPEGKESEPLNFLYEQMKSQAELLKEGYACFVTGECIACSAEEMSQAFCQTSKRREEVTCEREEVVDGATHMRTYTTYSACARTSSDSLVEVLRFQAAMATVGGLAFYGARHQKVKHLTLYERRTGAGR 192
The following BLAST results are available for this feature:
BLAST of NO15G00290.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853630.11.400e-3353.80hypothetical protein NGA_0480500 [Nannochloropsis ... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G00290NO15G00290Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G00290.1NO15G00290.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G00290.1.cds1NO15G00290.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G00290.1.cds2NO15G00290.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G00290.1.cds3NO15G00290.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G00290.1 ID=NO15G00290.1|Name=NO15G00290.1|organism=Nannochloropsis oceanica|type=mRNA|length=1385bp
CAGCTATCACTTTAATCGACCAGGTGAGTTCCTGCTCGCCCGAGTTTCTT
TCAGTTTCAGCGATTGCCTCCCTCCCTCCCTCCCTCCTTCCCTCCCTCCC
TCCTCCCTCCCCTGCTTTGTACCGTACCCACCAACCCCACACAACCCCCA
AAGCTCGGGTACACGCTTTTTGATTGTATTGGCACATAGTGCCAACCATG
ATTCCCCTATTCGAGAACAATTGCTTCCCCTCTCGCCTTGTCTTGCTCCC
TTTCCCCTCTTTCAGACGCATAAGAAGGGGAGGCTTGGCCCCCAGCACCA
ACGTCACTTGTCCTCCTCTTCTATATCATGTATCATTCCTTTAACCCTTT
CCTCTCCTCAATCCTCATCTTCGCTGTCAGTCCAGACACCAAGCAATTCC
GCACATGAGAAGAAAAGGAATGGGCCGTTCTTCACGGTCGACACCTTTCC
TCTCACCCTCCTTCCTCCTCCTCCAACTCCTCTTCGTTGTCTCCCTCCTC
CTCCTTCCCCTTGGTGGTGAAAGCGACGGCATCACCATCACAAGGGACGA
CGACGATGTTCAGGAAGAAGCAGGGCGAGCGGGAATGGAGGAGGCAACGA
AGGAGGAGGAGGGGAAGCAACAGCGACTAGAGCAACGTCAGAAGCAGCGG
CGGAAGAAAGACGACAAGTCCGATCTATTTTTATATCAACGGTCAAGACG
CCAGGCGGATTTGATCGAGGACGGGTACGCGTGTTTCGTGACGGGGGAAT
GCGCGGCCTGCTCGGCGGATGAAATGAGTGAGCCCTATTGTCAAGAAAGC
AAACGCCGGGCCGAGGTGACCTGCGAAAGGGAAGAGAACATCCACGGTGC
CAAGCAGATCAAGGCCATAACCATATTTGATGCCTGTACCCACACCCCTT
CCGACGATCTAACGGACGTCTTGCGTTTCCAAGCCCTCATGGCCATCGTG
GGGGGACTCGCCCTGTACGGTGCACGACATCAGAAGTTGAAGCACTTGAC
GCTCTATGAAAGGAGGGCAGGCGTGAGGAGATAGAAACGAGACACGGATT
CCTCCCTTCCTTCCCCCCTTCCCTTCTTCCCTTCCTGAGGGGGAAGGCTC
TGCCTGTGGTGCCCGCCAGCAATGATGCCCAAAATGGGAGCAAGGGACAT
GTGGTAGATGGATGGAGTACGACAAACACCTCTAGTGCGTAGTTGGGGTG
GTGGGATTTTATATAGAAGGACGGCGTGATCGAGGAGGGGAGAAGAGAGG
GAAGGAGGGAAGGAAGGAGGGAAACTTCCTCTATCCTTGCCTACTGACCC
GTGGCACAAGACACCTGAAGGTGCGATCTGGGTATTGTGTGAATGAGTTA
AGGAAAAGAGGGAGGGAGGGAGGGAGGGAGGGTTG
back to top

protein sequence of NO15G00290.1

>NO15G00290.1-protein ID=NO15G00290.1-protein|Name=NO15G00290.1|organism=Nannochloropsis oceanica|type=polypeptide|length=210bp
MRRKGMGRSSRSTPFLSPSFLLLQLLFVVSLLLLPLGGESDGITITRDDD
DVQEEAGRAGMEEATKEEEGKQQRLEQRQKQRRKKDDKSDLFLYQRSRRQ
ADLIEDGYACFVTGECAACSADEMSEPYCQESKRRAEVTCEREENIHGAK
QIKAITIFDACTHTPSDDLTDVLRFQALMAIVGGLALYGARHQKLKHLTL
YERRAGVRR*
back to top

mRNA from alignment at chr15:91961..93797-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G00290.1 ID=NO15G00290.1|Name=NO15G00290.1|organism=Nannochloropsis oceanica|type=mRNA|length=1837bp|location=Sequence derived from alignment at chr15:91961..93797- (Nannochloropsis oceanica)
CAGCTATCACTTTAATCGACCAGGTGAGTTCCTGCTCGCCCGAGTTTCTT
TCAGTTTCAGCGATTGCCTCCCTCCCTCCCTCCCTCCTTCCCTCCCTCCC
TCCTCCCTCCCCTGCTTTGTACCGTACCCACCAACCCCACACAACCCCCA
AAGCTCGGGTACACGCTTTTTGATTGTATTGGCACATAGTGCCAACCATG
ATTCCCCTATTCGAGAACAATTGCTTCCCCTCTCGCCTTGTCTTGCTCCC
TTTCCCCTCTTTCAGACGCATAAGAAGGGGAGGCTTGGCCCCCAGCACCA
ACGTCACTTGTCCTCCTCTTCTATATCATGTATCATTCCTTTAACCCTTT
CCTCTCCTCAATCCTCATCTTCGCTGTCAGTCCAGACACCAAGCAATTCC
GCACATGAGAAGAAAAGGAATGGGCCGTTCTTCACGGTCGACACCTTTCC
TCTCACCCTCCTTCCTCCTCCTCCAACTCCTCTTCGTTGTCTCCCTCCTC
CTCCTTCCCCTTGGTGGTGAAAGCGACGGCATCACCATCACAAGGGACGA
CGACGATGTTCAGGAAGAAGCAGGGCGAGCGGGAATGGAGGAGGCAACGA
AGGAGGAGGAGGGGAAGCAACAGCGACTAGAGCAACGTCAGAAGCAGCGG
CGGAAGAAAGACGACAAGTCCGATCTATTTTTATATCAACGGTCAAGACG
CCAGGCGGATTTGATCGAGGACGGGTACGCGTGTTTCGTGACGGGGGAAT
GCGCGGCCTGCTCGGCGGATGAAATGGTGAGGCAGAGAGGAGGGGAGGGA
GGGAGGGAGGGAGGGAGGGAGGGGGAGAGGGAATGGGTATGCAGACTTTA
CATTCGTTCATCTTTTGATGCACACATGAATGCATGTAATTGACACATGA
ATGCATGTGATTGGAACAAAGGAGGATAGGAGGGAGTACAGGGAGGAAGA
GAAGTAGGACTACTTTCATTGCACCGTCATCTGATCTGTATTCTTCGTGT
TGTTTTTAAATATTTGAATATGGTCACAATTATACTAGTACTCTAAACCC
TAATTAGAATTTTATTGACATTTTTCACAATTATAAATCGTCACACTATA
ATCACAACAGAGTGAGCCCTATTGTCAAGAAAGCAAACGCCGGGCCGAGG
TGACCTGCGAAAGGGAAGAGAACATCCACGGTGGTACGTGCTTTCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCACTCCTTCCTAT
TTCAAACCCTTCCCTCCCTCCAAACCTCCCTCCCCACCTCATTCCCCGCA
GCCAAGCAGATCAAGGCCATAACCATATTTGATGCCTGTACCCACACCCC
TTCCGACGATCTAACGGACGTCTTGCGTTTCCAAGCCCTCATGGCCATCG
TGGGGGGACTCGCCCTGTACGGTGCACGACATCAGAAGTTGAAGCACTTG
ACGCTCTATGAAAGGAGGGCAGGCGTGAGGAGATAGAAACGAGACACGGA
TTCCTCCCTTCCTTCCCCCCTTCCCTTCTTCCCTTCCTGAGGGGGAAGGC
TCTGCCTGTGGTGCCCGCCAGCAATGATGCCCAAAATGGGAGCAAGGGAC
ATGTGGTAGATGGATGGAGTACGACAAACACCTCTAGTGCGTAGTTGGGG
TGGTGGGATTTTATATAGAAGGACGGCGTGATCGAGGAGGGGAGAAGAGA
GGGAAGGAGGGAAGGAAGGAGGGAAACTTCCTCTATCCTTGCCTACTGAC
CCGTGGCACAAGACACCTGAAGGTGCGATCTGGGTATTGTGTGAATGAGT
TAAGGAAAAGAGGGAGGGAGGGAGGGAGGGAGGGTTG
back to top

Coding sequence (CDS) from alignment at chr15:91961..93797-

>NO15G00290.1 ID=NO15G00290.1|Name=NO15G00290.1|organism=Nannochloropsis oceanica|type=CDS|length=630bp|location=Sequence derived from alignment at chr15:91961..93797- (Nannochloropsis oceanica)
ATGAGAAGAAAAGGAATGGGCCGTTCTTCACGGTCGACACCTTTCCTCTC
ACCCTCCTTCCTCCTCCTCCAACTCCTCTTCGTTGTCTCCCTCCTCCTCC
TTCCCCTTGGTGGTGAAAGCGACGGCATCACCATCACAAGGGACGACGAC
GATGTTCAGGAAGAAGCAGGGCGAGCGGGAATGGAGGAGGCAACGAAGGA
GGAGGAGGGGAAGCAACAGCGACTAGAGCAACGTCAGAAGCAGCGGCGGA
AGAAAGACGACAAGTCCGATCTATTTTTATATCAACGGTCAAGACGCCAG
GCGGATTTGATCGAGGACGGGTACGCGTGTTTCGTGACGGGGGAATGCGC
GGCCTGCTCGGCGGATGAAATGAGTGAGCCCTATTGTCAAGAAAGCAAAC
GCCGGGCCGAGGTGACCTGCGAAAGGGAAGAGAACATCCACGGTGCCAAG
CAGATCAAGGCCATAACCATATTTGATGCCTGTACCCACACCCCTTCCGA
CGATCTAACGGACGTCTTGCGTTTCCAAGCCCTCATGGCCATCGTGGGGG
GACTCGCCCTGTACGGTGCACGACATCAGAAGTTGAAGCACTTGACGCTC
TATGAAAGGAGGGCAGGCGTGAGGAGATAG
back to top
Synonyms
Publications