NO15G00210, NO15G00210 (gene) Nannochloropsis oceanica

Overview
NameNO15G00210
Unique NameNO15G00210
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2121
Alignment locationchr15:53916..56036 +

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Properties
Property NameValue
DescriptionSmall nuclear ribonucleoprotein D3
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:53916..56036 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006396RNA processing
GO:0016043cellular component organization
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR010920LSM_dom
IPR027141LSm4/Sm_D1/D3
IPR001163Ribonucl_LSM
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO:0005634nucleus
Homology
BLAST of NO15G00210 vs. NCBI_GenBank
Match: EWM20813.1 (small nuclear ribonucleoprotein [Nannochloropsis gaditana])

HSP 1 Score: 174.9 bits (442), Expect = 2.000e-40
Identity = 83/94 (88.30%), Postives = 92/94 (97.87%), Query Frame = 0
Query:    1 MSVTGKGGVGIPIILLHDAEGGIVTVETRTGELYRGLLDEAEDNMNLIMRDSTKTNVHGKESRVDLVYIKGANVNYIILPDMLKRAPMFKRIKV 95
            MSVTGKGGVGIPIILLHDAEGGI+TVETRTGELYRGLLDEAEDNMNLI+RD TKTNVHGKES+V+L+YIKG+ VN++ILPDMLK+APMFKRIKV
Sbjct:    1 MSVTGKGGVGIPIILLHDAEGGIITVETRTGELYRGLLDEAEDNMNLILRDVTKTNVHGKESKVELIYIKGSQVNFMILPDMLKKAPMFKRIKV 94          
BLAST of NO15G00210 vs. NCBI_GenBank
Match: XP_008893681.1 (hypothetical protein PPTG_02041 [Phytophthora parasitica INRA-310] >ETI44658.1 hypothetical protein F443_10649 [Phytophthora parasitica P1569] >ETK84643.1 hypothetical protein L915_10409 [Phytophthora parasitica] >ETL38079.1 hypothetical protein L916_10303 [Phytophthora parasitica] >ETL91182.1 hypothetical protein L917_10241 [Phytophthora parasitica] >ETM44509.1 hypothetical protein L914_10271 [Phytophthora parasitica] >ETN21977.1 hypothetical protein PPTG_02041 [Phytophthora parasitica INRA-310] >ETO73308.1 hypothetical protein F444_10749 [Phytophthora parasitica P1976] >ETP14468.1 hypothetical protein F441_10589 [Phytophthora parasitica CJ01A1] >ETP42549.1 hypothetical protein F442_10549 [Phytophthora parasitica P10297])

HSP 1 Score: 159.5 bits (402), Expect = 8.500e-36
Identity = 73/127 (57.48%), Postives = 99/127 (77.95%), Query Frame = 0
Query:    1 MSVTGKGGVGIPIILLHDAEGGIVTVETRTGELYRGLLDEAEDNMNLIMRDSTKTNVHGKESRVDLVYIKGANVNYIILPDMLKRAPMFKRIKVWKKYHGNVPELGAG------VRGQAAVIMQKSQ 122
            M+VTGK GVGIP ILLHD EG IV++E +TGE YRGLLDE EDNMN +M+D+ +T+++G  S+V+ VY++G+ + +I+ PDMLK APMFKR+K+WKK+ G +P LG G       RGQAA I++K+Q
Sbjct:    1 MAVTGKRGVGIPTILLHDGEGTIVSIEMKTGETYRGLLDETEDNMNCVMKDAVRTDINGNTSQVEQVYLRGSQILFIVFPDMLKHAPMFKRVKMWKKHKGAIPTLGQGGVGGGAPRGQAAAIIRKAQ 127          
BLAST of NO15G00210 vs. NCBI_GenBank
Match: CCA17104.1 (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 152.1 bits (383), Expect = 1.400e-33
Identity = 67/127 (52.76%), Postives = 99/127 (77.95%), Query Frame = 0
Query:    1 MSVTGKGGVGIPIILLHDAEGGIVTVETRTGELYRGLLDEAEDNMNLIMRDSTKTNVHGKESRVDLVYIKGANVNYIILPDMLKRAPMFKRIKVWKKYHGNVPEL------GAGVRGQAAVIMQKSQ 122
            M+VTGK GVGIP ILLHD EG  V++E ++GE+YRG L+E EDNMN +++++ +T+++G  + V+LVY++G+ + +I+ PDMLK APMFKR+K+WKK+ G +P L      GAG RGQAA I++K++
Sbjct:    1 MAVTGKRGVGIPTILLHDGEGTTVSIEMKSGEIYRGYLEETEDNMNCVLKEAMRTDINGNTTHVELVYVRGSQILFIVFPDMLKHAPMFKRVKLWKKHKGVIPSLGQGGPGGAGPRGQAAAIIRKAK 127          
BLAST of NO15G00210 vs. NCBI_GenBank
Match: XP_002899088.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY62452.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 151.0 bits (380), Expect = 3.000e-33
Identity = 72/137 (52.55%), Postives = 100/137 (72.99%), Query Frame = 0
Query:    1 MSVTGKGGVGIPIILLHDAEGGIVTVETRTGELYRGLLDEAEDNMNLIMRDSTKTNVHGKESRVDLVYIKGANVNYIILPDM----------LKRAPMFKRIKVWKKYHGNVPELGAG------VRGQAAVIMQKSQ 122
            M+VTGK GVGIP ILLHD EG IV++E +TGE YRGLLDE EDNMN +M+D+ +T+++G  S+V+ VY++G+ + +I+ PD+          LK APMFKR+K+WKK+ G++P LG G       RGQAA I++K+Q
Sbjct:    1 MAVTGKRGVGIPTILLHDGEGTIVSIEMKTGETYRGLLDETEDNMNCVMKDAVRTDINGNTSQVEQVYLRGSQILFIVFPDIYPLQPDIAVTLKHAPMFKRVKMWKKHKGSIPTLGQGGVGGGAPRGQAAAIIRKAQ 137          
BLAST of NO15G00210 vs. NCBI_GenBank
Match: OQR90133.1 (hypothetical protein THRCLA_22585 [Thraustotheca clavata])

HSP 1 Score: 148.7 bits (374), Expect = 1.500e-32
Identity = 68/132 (51.52%), Postives = 95/132 (71.97%), Query Frame = 0
Query:    1 MSVTGKGGVGIPIILLHDAEGGIVTVETRTGELYRGLLDEAEDNMNLIMRDSTKTNVHGKESRVDLVYIKGANVNYIILPDMLKRAPMFKRIKVWKKYHGNVPEL----------GAGVRGQAAVIMQKSQA 123
            M+VTGK GVGIP ILLHD EG IVTVE + G+LYRG LDE EDNMN +++D+ +T++ G+++  D VY++G+ + +II PDMLK AP FKR+K+WKK+ G++P L          G+G RG A  +++K  A
Sbjct:    1 MAVTGKRGVGIPTILLHDGEGTIVTVELKNGDLYRGFLDETEDNMNCVLKDAYRTDIRGQQTHCDQVYLRGSQILFIIFPDMLKHAPFFKRVKLWKKHKGSIPALGLGGGSHIGIGSGQRGAAGAMLRKPPA 132          
BLAST of NO15G00210 vs. NCBI_GenBank
Match: XP_012202385.1 (hypothetical protein SPRG_07720 [Saprolegnia parasitica CBS 223.65] >KDO27008.1 hypothetical protein SPRG_07720 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 147.9 bits (372), Expect = 2.600e-32
Identity = 68/121 (56.20%), Postives = 91/121 (75.21%), Query Frame = 0
Query:    1 MSVTGKGGVGIPIILLHDAEGGIVTVETRTGELYRGLLDEAEDNMNLIMRDSTKTNVHGKESRVDLVYIKGANVNYIILPDMLKRAPMFKRIKVWKKYHGNVPELGAGVRGQAAVIMQKSQ 122
            M+VTGK GVGIP ILLHD EG IVTVE + G+LYRG LDE EDNMN +++D+ +T++ G +S  D VY++G+ + +II PDMLK AP FKR+K+WKK+ G++P LG G  G A + +  SQ
Sbjct:    1 MAVTGKRGVGIPTILLHDGEGTIVTVELKNGDLYRGFLDETEDNMNCVLKDAYRTDIRGMQSHCDQVYLRGSQILFIIFPDMLKHAPFFKRVKLWKKHKGSIPALGLG--GGAHIGLGNSQ 119          
BLAST of NO15G00210 vs. NCBI_GenBank
Match: XP_024586207.1 (40s ribosomal protein s16 [Plasmopara halstedii] >CEG49838.1 40s ribosomal protein s16 [Plasmopara halstedii])

HSP 1 Score: 147.5 bits (371), Expect = 3.300e-32
Identity = 71/138 (51.45%), Postives = 98/138 (71.01%), Query Frame = 0
Query:    1 MSVTGKGGVGIPIILLHDAEGGIVTVETRTGELYRGLLDEAEDNMNLIMRDSTKTNVHGKESRVDLVYIKGANVNYIILPDM-----------LKRAPMFKRIKVWKKYHGNVPELGAG------VRGQAAVIMQKSQ 122
            M+VTGK GVGIP ILLHD EG IV++E +TGE YRGLLDE EDNMN +M+++ +T+++G  S V+ VY++G+ + +I+ PD+           LK APMFKR+K+WKK+ G +P LG G       RGQAA I++K+Q
Sbjct:  169 MAVTGKRGVGIPTILLHDGEGTIVSIEMKTGETYRGLLDETEDNMNCVMKEAVRTDINGNTSHVEQVYLRGSQILFIVFPDIYPLQLYSTHCTLKHAPMFKRVKMWKKHKGAIPTLGQGGVGGGAPRGQAAAIIRKAQ 306          
BLAST of NO15G00210 vs. NCBI_GenBank
Match: XP_009531522.1 (hypothetical protein PHYSODRAFT_510917 [Phytophthora sojae] >EGZ14093.1 hypothetical protein PHYSODRAFT_510917 [Phytophthora sojae])

HSP 1 Score: 147.1 bits (370), Expect = 4.400e-32
Identity = 71/140 (50.71%), Postives = 98/140 (70.00%), Query Frame = 0
Query:    1 MSVTGKGGVGIPIILLHDAEGGIVTVETRTGELYRGLLDEAEDNMNLIMRDSTKTNVHGKESRVDLVYIKGANVNYIILPDM-------------LKRAPMFKRIKVWKKYHGNVPELGAG------VRGQAAVIMQKSQ 122
            M+VTGK GVGIP ILLHD EG IV++E +TGE YRGLLDE EDNMN +M+D+ +T+++G  + V+ VY++G+ + +I+ PD+             LK APMFKR+K+WKK+ G +P LG G       RGQAA I++K+Q
Sbjct:    1 MAVTGKRGVGIPTILLHDGEGTIVSIEMKTGETYRGLLDETEDNMNCVMKDAVRTDINGNTTHVEQVYLRGSQILFIVFPDIYPLQPHTCGCIFTLKHAPMFKRVKMWKKHKGAIPTLGQGGVGGGAPRGQAAAIIRKAQ 140          
BLAST of NO15G00210 vs. NCBI_GenBank
Match: XP_008618962.1 (small nuclear ribonucleoprotein D3 [Saprolegnia diclina VS20] >EQC27542.1 small nuclear ribonucleoprotein D3 [Saprolegnia diclina VS20])

HSP 1 Score: 147.1 bits (370), Expect = 4.400e-32
Identity = 68/121 (56.20%), Postives = 91/121 (75.21%), Query Frame = 0
Query:    1 MSVTGKGGVGIPIILLHDAEGGIVTVETRTGELYRGLLDEAEDNMNLIMRDSTKTNVHGKESRVDLVYIKGANVNYIILPDMLKRAPMFKRIKVWKKYHGNVPELGAGVRGQAAVIMQKSQ 122
            M+VTGK GVGIP ILLHD EG IVTVE + G+LYRG LDE EDNMN +++D+ +T++ G +S  D VY++G+ + +II PDMLK AP FKR+K+WKK+ G++P LG G  G A + +  SQ
Sbjct:    1 MAVTGKRGVGIPTILLHDGEGTIVTVELKNGDLYRGFLDETEDNMNCVLKDAYRTDLRGMQSHCDQVYLRGSQILFIIFPDMLKHAPFFKRVKLWKKHKGSIPALGLG--GGAHIGLGNSQ 119          
BLAST of NO15G00210 vs. NCBI_GenBank
Match: POM64681.1 (Sm-like ribonucleo protein [Phytophthora palmivora var. palmivora])

HSP 1 Score: 147.1 bits (370), Expect = 4.400e-32
Identity = 71/141 (50.35%), Postives = 99/141 (70.21%), Query Frame = 0
Query:    1 MSVTGKGGVGIPIILLHDAEGGIVTVETRTGELYRGLLDEAEDNMNLIMRDSTKTNVHGKESRVDLVYIKGANVNYIILPDM--------------LKRAPMFKRIKVWKKYHGNVPELGAG------VRGQAAVIMQKSQ 122
            M+VTGK GVGIP ILLHD EG IV++E +TGE YRGLLDE EDNMN +M+D+ +T+++G  ++V+ VY++G+ + +I+ PD+              LK APMFKR+K+WKK+ G +P LG G       RGQAA I++K+Q
Sbjct:    1 MAVTGKRGVGIPTILLHDGEGTIVSIEMKTGETYRGLLDETEDNMNCVMKDAVRTDINGNTTQVEQVYLRGSQILFIVFPDIYPLQLGVDALVECTLKHAPMFKRVKMWKKHKGAIPTLGQGGVGGGAPRGQAAAIIRKAQ 141          
The following BLAST results are available for this feature:
BLAST of NO15G00210 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM20813.12.000e-4088.30small nuclear ribonucleoprotein [Nannochloropsis g... [more]
XP_008893681.18.500e-3657.48hypothetical protein PPTG_02041 [Phytophthora para... [more]
CCA17104.11.400e-3352.76conserved hypothetical protein [Albugo laibachii N... [more]
XP_002899088.13.000e-3352.55conserved hypothetical protein [Phytophthora infes... [more]
OQR90133.11.500e-3251.52hypothetical protein THRCLA_22585 [Thraustotheca c... [more]
XP_012202385.12.600e-3256.20hypothetical protein SPRG_07720 [Saprolegnia paras... [more]
XP_024586207.13.300e-3251.4540s ribosomal protein s16 [Plasmopara halstedii] >... [more]
XP_009531522.14.400e-3250.71hypothetical protein PHYSODRAFT_510917 [Phytophtho... [more]
XP_008618962.14.400e-3256.20small nuclear ribonucleoprotein D3 [Saprolegnia di... [more]
POM64681.14.400e-3250.35Sm-like ribonucleo protein [Phytophthora palmivora... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR006ncniR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR095ngnoR095Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO15G00210.1NO15G00210.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|554466gene_4574Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_101532g2gene9599Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO15G00210.1NO15G00210.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO15G00210 ID=NO15G00210|Name=NO15G00210|organism=Nannochloropsis oceanica|type=gene|length=2121bp
GTGCACCAGTTGTCCGCCATGCTGGCGGTGGTGGTGGTGTGTCGACGGGT
AGTGAAGTGAAGAGAGGATGAGAGGAGGAAGGGAGGGTTGATGATTATGA
TGGCTGCTGAGGTAAGCGCGCTGAGAGCTCTAAACGTAAGAAGCGCGACA
AAAATAGGAGCTTTTTGTTTCACAAATGAAGGGTAGACGGCGACAACGCG
CCACCAACAAAGGGCACACACAGGTTGCGGAGCCCCTGCCCATGCATGAA
GCAAAAAAAAGAATGCTTCCTGCTTCCGCAGCTTGCTGGAGTGGGCGATG
TCAGGCGGCGAGATGAGAGGAAACACAGAGGTAGAGGAATCAAAGGGGCC
AGGCCAGGCATATTAAGCCGGACAACCTCAGAAATTGTATACATGCATGA
GAAGTGTGTAGATTATGTATGCGTGTTTGTTGTGATTTCGTGTCGTTCTG
TGTTTATGCCAAAAGCCAAGGGCATTCGCGCATGGATGCTCCTTTGCTCC
CTCCTCACACACACTGCAGACTTATTCCGACCATCGCTCATCCCCACCCT
CGAGCAGGCTACGGAAGCATAGGAAGCAGCGCGCGGACCCAGCGAGTGTA
GAAGGCAGGGCGTGGAAGGCAGGGCAGTACCACAAACTCAGCAACAATCC
CAGCCGCAGCAAGCCCCTTGTTCTTTGGAGCAGCGGAGCGGACAGTTGCA
GCAGCAGCAGCAGTAGCGCGTGAAGCACATAGGGTCATTTATAGACACAC
ACGCAATTAGATGTCAGTCACAGGCAAGGGCGGGGTGGGCATCCCAATCA
TCTTGCTGCATGATGCCGAGgtaaaatgggaggcctaaagggagggaagc
gatgaggaggatgcttgtgtccctgcatagaagctctgtgcagatgtcca
caggacgaacagagatgcgttgcactcacgtcactgctgcaagagagggc
ataaaaatcgaagacattcgcagcaagtaaacccatcgtaccatacccac
caaatcatcctccctcctaccctccctccctccctccctctctccctccc
tcctcgtccagGGTGGGATCGTTACAGTGGAGACACGGACCGGCGAATTA
TACCGTGGCCTGCTTGATGAGGCAGAAGATAATATGAATTTGATCATGAG
AGATTCAACCAAGACGAATGTTCATGGCAAGGAGAGCCGGGTGGATCTGG
TGTACATCAAGGGGGCCAATgtgagcagggagagagggagggagggtata
ggtgctcgctgatcgatcttgcttacatctcacatgtctgattcagcttt
aactcgccctccctccttccctccctctctaactagGTCAATTATATCAT
CCTTCCCGACATGCTTAAACGGGCTCCCATGTTCAAGCGCATCAAGgtag
ggaggggtggagggatggaaggagagggggagactagggaataacgacag
atgcgagatgatgaaaggagagtgggagcattgaaatgattcattctcac
ttctcactcctccacctttcctccctccctccctccttccctctccccag
GTCTGGAAGAAATACCACGGTAATGTGCCCGAGCTCGGGGCCGGCGTGCG
AGGCCAAGCCGCCGTCATCATGCAGAAATCGCAGGCAGGAGCAGGTCGAG
GGAGGGGGGGAGGAGGACCACAGGGAATGGGCGGGCCGATGGGAGGGAGG
GGGGGAGGAGGGGGGGAGGACCGGTGTTGATGCCGGGAGGAGGAGGGGTG
GGGAGTGGGAGTTTCGGCGGGGTGGGAGGAGGAGGAGGAGGGAGGGGAAC
GTTTGGGGGCATGGCGCCACCACCGCCGTTTATGGGGGGAGGGATGCCGC
CGCCAACGCAGCAACAGCAACGGCCGTATTAACTCAGATGTGAGAGAGAG
GGGGAGGGAAGGGGGGCGAAGAGTCCGATACGCGATGACGATAGGGGTAA
AGAAATCGATTAGGGCATTGAAAGATGTGTGTGGAGGGTTGGAACGTGTC
TTACTCCTTCTTCGATAGGGGTCTCCTCCTTTTTGGTTTCAATATGAATC
TGTTCCCCGGAAAGAGGATATACGAGTGGAATTGTTGCACCCCTTTTTTT
TTCGCTCTGTTCTGCTGCTTT
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protein sequence of NO15G00210.1

>NO15G00210.1-protein ID=NO15G00210.1-protein|Name=NO15G00210.1|organism=Nannochloropsis oceanica|type=polypeptide|length=153bp
MSVTGKGGVGIPIILLHDAEGGIVTVETRTGELYRGLLDEAEDNMNLIMR
DSTKTNVHGKESRVDLVYIKGANVNYIILPDMLKRAPMFKRIKVWKKYHG
NVPELGAGVRGQAAVIMQKSQAGAGRGRGGGGPQGMGGPMGGRGGGGGED
RC*
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Synonyms
Publications