NO15G00210.1, NO15G00210.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G00210.1
Unique NameNO15G00210.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1610
Alignment locationchr15:53916..56036 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:53916..56036 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO15G00210.1 vs.
Match: EWM20813.1 (small nuclear ribonucleoprotein [Nannochloropsis gaditana])

HSP 1 Score: 174.9 bits (442), Expect = 2.000e-40
Identity = 83/94 (88.30%), Postives = 92/94 (97.87%), Query Frame = 0 
Query:    1 MSVTGKGGVGIPIILLHDAEGGIVTVETRTGELYRGLLDEAEDNMNLIMRDSTKTNVHGKESRVDLVYIKGANVNYIILPDMLKRAPMFKRIKV 95
            MSVTGKGGVGIPIILLHDAEGGI+TVETRTGELYRGLLDEAEDNMNLI+RD TKTNVHGKES+V+L+YIKG+ VN++ILPDMLK+APMFKRIKV
Sbjct:    1 MSVTGKGGVGIPIILLHDAEGGIITVETRTGELYRGLLDEAEDNMNLILRDVTKTNVHGKESKVELIYIKGSQVNFMILPDMLKKAPMFKRIKV 94
The following BLAST results are available for this feature:
BLAST of NO15G00210.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20813.12.000e-4088.30small nuclear ribonucleoprotein [Nannochloropsis g... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G00210NO15G00210Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G00210.1NO15G00210.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G00210.1.cds1NO15G00210.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G00210.1.cds2NO15G00210.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G00210.1.cds3NO15G00210.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G00210.1.cds4NO15G00210.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G00210.1 ID=NO15G00210.1|Name=NO15G00210.1|organism=Nannochloropsis oceanica|type=mRNA|length=1610bp
GTGCACCAGTTGTCCGCCATGCTGGCGGTGGTGGTGGTGTGTCGACGGGT
AGTGAAGTGAAGAGAGGATGAGAGGAGGAAGGGAGGGTTGATGATTATGA
TGGCTGCTGAGGTAAGCGCGCTGAGAGCTCTAAACGTAAGAAGCGCGACA
AAAATAGGAGCTTTTTGTTTCACAAATGAAGGGTAGACGGCGACAACGCG
CCACCAACAAAGGGCACACACAGGTTGCGGAGCCCCTGCCCATGCATGAA
GCAAAAAAAAGAATGCTTCCTGCTTCCGCAGCTTGCTGGAGTGGGCGATG
TCAGGCGGCGAGATGAGAGGAAACACAGAGGTAGAGGAATCAAAGGGGCC
AGGCCAGGCATATTAAGCCGGACAACCTCAGAAATTGTATACATGCATGA
GAAGTGTGTAGATTATGTATGCGTGTTTGTTGTGATTTCGTGTCGTTCTG
TGTTTATGCCAAAAGCCAAGGGCATTCGCGCATGGATGCTCCTTTGCTCC
CTCCTCACACACACTGCAGACTTATTCCGACCATCGCTCATCCCCACCCT
CGAGCAGGCTACGGAAGCATAGGAAGCAGCGCGCGGACCCAGCGAGTGTA
GAAGGCAGGGCGTGGAAGGCAGGGCAGTACCACAAACTCAGCAACAATCC
CAGCCGCAGCAAGCCCCTTGTTCTTTGGAGCAGCGGAGCGGACAGTTGCA
GCAGCAGCAGCAGTAGCGCGTGAAGCACATAGGGTCATTTATAGACACAC
ACGCAATTAGATGTCAGTCACAGGCAAGGGCGGGGTGGGCATCCCAATCA
TCTTGCTGCATGATGCCGAGGGTGGGATCGTTACAGTGGAGACACGGACC
GGCGAATTATACCGTGGCCTGCTTGATGAGGCAGAAGATAATATGAATTT
GATCATGAGAGATTCAACCAAGACGAATGTTCATGGCAAGGAGAGCCGGG
TGGATCTGGTGTACATCAAGGGGGCCAATGTCAATTATATCATCCTTCCC
GACATGCTTAAACGGGCTCCCATGTTCAAGCGCATCAAGGTCTGGAAGAA
ATACCACGGTAATGTGCCCGAGCTCGGGGCCGGCGTGCGAGGCCAAGCCG
CCGTCATCATGCAGAAATCGCAGGCAGGAGCAGGTCGAGGGAGGGGGGGA
GGAGGACCACAGGGAATGGGCGGGCCGATGGGAGGGAGGGGGGGAGGAGG
GGGGGAGGACCGGTGTTGATGCCGGGAGGAGGAGGGGTGGGGAGTGGGAG
TTTCGGCGGGGTGGGAGGAGGAGGAGGAGGGAGGGGAACGTTTGGGGGCA
TGGCGCCACCACCGCCGTTTATGGGGGGAGGGATGCCGCCGCCAACGCAG
CAACAGCAACGGCCGTATTAACTCAGATGTGAGAGAGAGGGGGAGGGAAG
GGGGGCGAAGAGTCCGATACGCGATGACGATAGGGGTAAAGAAATCGATT
AGGGCATTGAAAGATGTGTGTGGAGGGTTGGAACGTGTCTTACTCCTTCT
TCGATAGGGGTCTCCTCCTTTTTGGTTTCAATATGAATCTGTTCCCCGGA
AAGAGGATATACGAGTGGAATTGTTGCACCCCTTTTTTTTTCGCTCTGTT
CTGCTGCTTT
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protein sequence of NO15G00210.1

>NO15G00210.1-protein ID=NO15G00210.1-protein|Name=NO15G00210.1|organism=Nannochloropsis oceanica|type=polypeptide|length=153bp
MSVTGKGGVGIPIILLHDAEGGIVTVETRTGELYRGLLDEAEDNMNLIMR
DSTKTNVHGKESRVDLVYIKGANVNYIILPDMLKRAPMFKRIKVWKKYHG
NVPELGAGVRGQAAVIMQKSQAGAGRGRGGGGPQGMGGPMGGRGGGGGED
RC*
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mRNA from alignment at chr15:53916..56036+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G00210.1 ID=NO15G00210.1|Name=NO15G00210.1|organism=Nannochloropsis oceanica|type=mRNA|length=2121bp|location=Sequence derived from alignment at chr15:53916..56036+ (Nannochloropsis oceanica)
GTGCACCAGTTGTCCGCCATGCTGGCGGTGGTGGTGGTGTGTCGACGGGT
AGTGAAGTGAAGAGAGGATGAGAGGAGGAAGGGAGGGTTGATGATTATGA
TGGCTGCTGAGGTAAGCGCGCTGAGAGCTCTAAACGTAAGAAGCGCGACA
AAAATAGGAGCTTTTTGTTTCACAAATGAAGGGTAGACGGCGACAACGCG
CCACCAACAAAGGGCACACACAGGTTGCGGAGCCCCTGCCCATGCATGAA
GCAAAAAAAAGAATGCTTCCTGCTTCCGCAGCTTGCTGGAGTGGGCGATG
TCAGGCGGCGAGATGAGAGGAAACACAGAGGTAGAGGAATCAAAGGGGCC
AGGCCAGGCATATTAAGCCGGACAACCTCAGAAATTGTATACATGCATGA
GAAGTGTGTAGATTATGTATGCGTGTTTGTTGTGATTTCGTGTCGTTCTG
TGTTTATGCCAAAAGCCAAGGGCATTCGCGCATGGATGCTCCTTTGCTCC
CTCCTCACACACACTGCAGACTTATTCCGACCATCGCTCATCCCCACCCT
CGAGCAGGCTACGGAAGCATAGGAAGCAGCGCGCGGACCCAGCGAGTGTA
GAAGGCAGGGCGTGGAAGGCAGGGCAGTACCACAAACTCAGCAACAATCC
CAGCCGCAGCAAGCCCCTTGTTCTTTGGAGCAGCGGAGCGGACAGTTGCA
GCAGCAGCAGCAGTAGCGCGTGAAGCACATAGGGTCATTTATAGACACAC
ACGCAATTAGATGTCAGTCACAGGCAAGGGCGGGGTGGGCATCCCAATCA
TCTTGCTGCATGATGCCGAGGTAAAATGGGAGGCCTAAAGGGAGGGAAGC
GATGAGGAGGATGCTTGTGTCCCTGCATAGAAGCTCTGTGCAGATGTCCA
CAGGACGAACAGAGATGCGTTGCACTCACGTCACTGCTGCAAGAGAGGGC
ATAAAAATCGAAGACATTCGCAGCAAGTAAACCCATCGTACCATACCCAC
CAAATCATCCTCCCTCCTACCCTCCCTCCCTCCCTCCCTCTCTCCCTCCC
TCCTCGTCCAGGGTGGGATCGTTACAGTGGAGACACGGACCGGCGAATTA
TACCGTGGCCTGCTTGATGAGGCAGAAGATAATATGAATTTGATCATGAG
AGATTCAACCAAGACGAATGTTCATGGCAAGGAGAGCCGGGTGGATCTGG
TGTACATCAAGGGGGCCAATGTGAGCAGGGAGAGAGGGAGGGAGGGTATA
GGTGCTCGCTGATCGATCTTGCTTACATCTCACATGTCTGATTCAGCTTT
AACTCGCCCTCCCTCCTTCCCTCCCTCTCTAACTAGGTCAATTATATCAT
CCTTCCCGACATGCTTAAACGGGCTCCCATGTTCAAGCGCATCAAGGTAG
GGAGGGGTGGAGGGATGGAAGGAGAGGGGGAGACTAGGGAATAACGACAG
ATGCGAGATGATGAAAGGAGAGTGGGAGCATTGAAATGATTCATTCTCAC
TTCTCACTCCTCCACCTTTCCTCCCTCCCTCCCTCCTTCCCTCTCCCCAG
GTCTGGAAGAAATACCACGGTAATGTGCCCGAGCTCGGGGCCGGCGTGCG
AGGCCAAGCCGCCGTCATCATGCAGAAATCGCAGGCAGGAGCAGGTCGAG
GGAGGGGGGGAGGAGGACCACAGGGAATGGGCGGGCCGATGGGAGGGAGG
GGGGGAGGAGGGGGGGAGGACCGGTGTTGATGCCGGGAGGAGGAGGGGTG
GGGAGTGGGAGTTTCGGCGGGGTGGGAGGAGGAGGAGGAGGGAGGGGAAC
GTTTGGGGGCATGGCGCCACCACCGCCGTTTATGGGGGGAGGGATGCCGC
CGCCAACGCAGCAACAGCAACGGCCGTATTAACTCAGATGTGAGAGAGAG
GGGGAGGGAAGGGGGGCGAAGAGTCCGATACGCGATGACGATAGGGGTAA
AGAAATCGATTAGGGCATTGAAAGATGTGTGTGGAGGGTTGGAACGTGTC
TTACTCCTTCTTCGATAGGGGTCTCCTCCTTTTTGGTTTCAATATGAATC
TGTTCCCCGGAAAGAGGATATACGAGTGGAATTGTTGCACCCCTTTTTTT
TTCGCTCTGTTCTGCTGCTTT
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Coding sequence (CDS) from alignment at chr15:53916..56036+

>NO15G00210.1 ID=NO15G00210.1|Name=NO15G00210.1|organism=Nannochloropsis oceanica|type=CDS|length=459bp|location=Sequence derived from alignment at chr15:53916..56036+ (Nannochloropsis oceanica)
ATGTCAGTCACAGGCAAGGGCGGGGTGGGCATCCCAATCATCTTGCTGCA
TGATGCCGAGGGTGGGATCGTTACAGTGGAGACACGGACCGGCGAATTAT
ACCGTGGCCTGCTTGATGAGGCAGAAGATAATATGAATTTGATCATGAGA
GATTCAACCAAGACGAATGTTCATGGCAAGGAGAGCCGGGTGGATCTGGT
GTACATCAAGGGGGCCAATGTCAATTATATCATCCTTCCCGACATGCTTA
AACGGGCTCCCATGTTCAAGCGCATCAAGGTCTGGAAGAAATACCACGGT
AATGTGCCCGAGCTCGGGGCCGGCGTGCGAGGCCAAGCCGCCGTCATCAT
GCAGAAATCGCAGGCAGGAGCAGGTCGAGGGAGGGGGGGAGGAGGACCAC
AGGGAATGGGCGGGCCGATGGGAGGGAGGGGGGGAGGAGGGGGGGAGGAC
CGGTGTTGA
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Synonyms
Publications