NO15G00070, NO15G00070 (gene) Nannochloropsis oceanica

Overview
NameNO15G00070
Unique NameNO15G00070
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length906
Alignment locationchr15:12004..12909 -

Link to JBrowse

Properties
Property NameValue
Descriptionankyrin repeat family protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:12004..12909 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036770Ankyrin_rpt-contain_sf
IPR020683Ankyrin_rpt-contain_dom
IPR002110Ankyrin_rpt
Homology
[Close]
BLAST of NO15G00070 vs. NCBI_GenBank
Match: XP_023808098.1 (SH3 and multiple ankyrin repeat domains protein 3-like isoform X3 [Oryzias latipes])

HSP 1 Score: 69.3 bits (168), Expect = 2.300e-8
Identity = 54/174 (31.03%), Postives = 82/174 (47.13%), Query Frame = 0 
Query:   19 QLTTWIVRNPRQSEARDSRGNTPLWAAAR-RGSYDLVSYLLVSRGVDVDGRTINGSTAIHHVT---DAEVLGLLMDRGAEPVVRNDKGWTPLMHHVR-AGRPECVARLLEDPRVRASIDNVAEEDDFDGFSALHLACCFNNITPTAKLAILRHLLVAGADPTLPNVYGHDSLQI 188
            +++ W+ +    +      G  PL  A +   S DL+  +L S G  +D RT +G TA+H      ++  L  L+D GA P  ++ +G TPL H     G P C   LL+D    ASI       D +G+  +H AC + N+        L HLL  GAD +  N  G+ +L +
Sbjct:  132 KVSKWLEKGLDPNFHDSDSGECPLTLAVQLEDSCDLIK-VLRSGGAHLDFRTRDGITALHRAVLCRNSTALMTLLDLGASPDYKDSRGLTPLYHSAMVGGAPYCCELLLQD---HASIGIT----DENGWQEIHQACRYGNVQH------LEHLLFYGADMSSQNASGNTALHL 291
[Close]
BLAST of NO15G00070 vs. NCBI_GenBank
Match: XP_023808097.1 (SH3 and multiple ankyrin repeat domains protein 3-like isoform X2 [Oryzias latipes])

HSP 1 Score: 69.3 bits (168), Expect = 2.300e-8
Identity = 54/174 (31.03%), Postives = 82/174 (47.13%), Query Frame = 0 
Query:   19 QLTTWIVRNPRQSEARDSRGNTPLWAAAR-RGSYDLVSYLLVSRGVDVDGRTINGSTAIHHVT---DAEVLGLLMDRGAEPVVRNDKGWTPLMHHVR-AGRPECVARLLEDPRVRASIDNVAEEDDFDGFSALHLACCFNNITPTAKLAILRHLLVAGADPTLPNVYGHDSLQI 188
            +++ W+ +    +      G  PL  A +   S DL+  +L S G  +D RT +G TA+H      ++  L  L+D GA P  ++ +G TPL H     G P C   LL+D    ASI       D +G+  +H AC + N+        L HLL  GAD +  N  G+ +L +
Sbjct:  165 KVSKWLEKGLDPNFHDSDSGECPLTLAVQLEDSCDLIK-VLRSGGAHLDFRTRDGITALHRAVLCRNSTALMTLLDLGASPDYKDSRGLTPLYHSAMVGGAPYCCELLLQD---HASIGIT----DENGWQEIHQACRYGNVQH------LEHLLFYGADMSSQNASGNTALHL 324
[Close]
BLAST of NO15G00070 vs. NCBI_GenBank
Match: XP_023808096.1 (SH3 and multiple ankyrin repeat domains protein 3-like isoform X1 [Oryzias latipes])

HSP 1 Score: 69.3 bits (168), Expect = 2.300e-8
Identity = 54/174 (31.03%), Postives = 82/174 (47.13%), Query Frame = 0 
Query:   19 QLTTWIVRNPRQSEARDSRGNTPLWAAAR-RGSYDLVSYLLVSRGVDVDGRTINGSTAIHHVT---DAEVLGLLMDRGAEPVVRNDKGWTPLMHHVR-AGRPECVARLLEDPRVRASIDNVAEEDDFDGFSALHLACCFNNITPTAKLAILRHLLVAGADPTLPNVYGHDSLQI 188
            +++ W+ +    +      G  PL  A +   S DL+  +L S G  +D RT +G TA+H      ++  L  L+D GA P  ++ +G TPL H     G P C   LL+D    ASI       D +G+  +H AC + N+        L HLL  GAD +  N  G+ +L +
Sbjct:  165 KVSKWLEKGLDPNFHDSDSGECPLTLAVQLEDSCDLIK-VLRSGGAHLDFRTRDGITALHRAVLCRNSTALMTLLDLGASPDYKDSRGLTPLYHSAMVGGAPYCCELLLQD---HASIGIT----DENGWQEIHQACRYGNVQH------LEHLLFYGADMSSQNASGNTALHL 324
[Close]
BLAST of NO15G00070 vs. NCBI_GenBank
Match: XP_023808100.1 (SH3 and multiple ankyrin repeat domains protein 3-like isoform X4 [Oryzias latipes])

HSP 1 Score: 69.3 bits (168), Expect = 2.300e-8
Identity = 54/174 (31.03%), Postives = 82/174 (47.13%), Query Frame = 0 
Query:   19 QLTTWIVRNPRQSEARDSRGNTPLWAAAR-RGSYDLVSYLLVSRGVDVDGRTINGSTAIHHVT---DAEVLGLLMDRGAEPVVRNDKGWTPLMHHVR-AGRPECVARLLEDPRVRASIDNVAEEDDFDGFSALHLACCFNNITPTAKLAILRHLLVAGADPTLPNVYGHDSLQI 188
            +++ W+ +    +      G  PL  A +   S DL+  +L S G  +D RT +G TA+H      ++  L  L+D GA P  ++ +G TPL H     G P C   LL+D    ASI       D +G+  +H AC + N+        L HLL  GAD +  N  G+ +L +
Sbjct:   97 KVSKWLEKGLDPNFHDSDSGECPLTLAVQLEDSCDLIK-VLRSGGAHLDFRTRDGITALHRAVLCRNSTALMTLLDLGASPDYKDSRGLTPLYHSAMVGGAPYCCELLLQD---HASIGIT----DENGWQEIHQACRYGNVQH------LEHLLFYGADMSSQNASGNTALHL 256
[Close]
BLAST of NO15G00070 vs. NCBI_GenBank
Match: XP_023808102.1 (SH3 and multiple ankyrin repeat domains protein 3-like isoform X6 [Oryzias latipes])

HSP 1 Score: 69.3 bits (168), Expect = 2.300e-8
Identity = 54/174 (31.03%), Postives = 82/174 (47.13%), Query Frame = 0 
Query:   19 QLTTWIVRNPRQSEARDSRGNTPLWAAAR-RGSYDLVSYLLVSRGVDVDGRTINGSTAIHHVT---DAEVLGLLMDRGAEPVVRNDKGWTPLMHHVR-AGRPECVARLLEDPRVRASIDNVAEEDDFDGFSALHLACCFNNITPTAKLAILRHLLVAGADPTLPNVYGHDSLQI 188
            +++ W+ +    +      G  PL  A +   S DL+  +L S G  +D RT +G TA+H      ++  L  L+D GA P  ++ +G TPL H     G P C   LL+D    ASI       D +G+  +H AC + N+        L HLL  GAD +  N  G+ +L +
Sbjct:  165 KVSKWLEKGLDPNFHDSDSGECPLTLAVQLEDSCDLIK-VLRSGGAHLDFRTRDGITALHRAVLCRNSTALMTLLDLGASPDYKDSRGLTPLYHSAMVGGAPYCCELLLQD---HASIGIT----DENGWQEIHQACRYGNVQH------LEHLLFYGADMSSQNASGNTALHL 324
[Close]
BLAST of NO15G00070 vs. NCBI_GenBank
Match: XP_023808101.1 (SH3 and multiple ankyrin repeat domains protein 3-like isoform X5 [Oryzias latipes])

HSP 1 Score: 69.3 bits (168), Expect = 2.300e-8
Identity = 54/174 (31.03%), Postives = 82/174 (47.13%), Query Frame = 0 
Query:   19 QLTTWIVRNPRQSEARDSRGNTPLWAAAR-RGSYDLVSYLLVSRGVDVDGRTINGSTAIHHVT---DAEVLGLLMDRGAEPVVRNDKGWTPLMHHVR-AGRPECVARLLEDPRVRASIDNVAEEDDFDGFSALHLACCFNNITPTAKLAILRHLLVAGADPTLPNVYGHDSLQI 188
            +++ W+ +    +      G  PL  A +   S DL+  +L S G  +D RT +G TA+H      ++  L  L+D GA P  ++ +G TPL H     G P C   LL+D    ASI       D +G+  +H AC + N+        L HLL  GAD +  N  G+ +L +
Sbjct:   11 KVSKWLEKGLDPNFHDSDSGECPLTLAVQLEDSCDLIK-VLRSGGAHLDFRTRDGITALHRAVLCRNSTALMTLLDLGASPDYKDSRGLTPLYHSAMVGGAPYCCELLLQD---HASIGIT----DENGWQEIHQACRYGNVQH------LEHLLFYGADMSSQNASGNTALHL 170
[Close]
BLAST of NO15G00070 vs. NCBI_GenBank
Match: XP_020469099.1 (SH3 and multiple ankyrin repeat domains protein 3-like [Monopterus albus])

HSP 1 Score: 68.9 bits (167), Expect = 3.000e-8
Identity = 51/173 (29.48%), Postives = 80/173 (46.24%), Query Frame = 0 
Query:   19 QLTTWIVRNPRQSEARDSRGNTPLWAAARRGSYDLVSYLLVSRGVDVDGRTINGSTAIHHVT---DAEVLGLLMDRGAEPVVRNDKGWTPLMHHVR-AGRPECVARLLEDPRVRASIDNVAEEDDFDGFSALHLACCFNNITPTAKLAILRHLLVAGADPTLPNVYGHDSLQI 188
            +++ W+ +    +      G  PL  A +      +  +L S G  +D RT +G TA+H      ++  L  L+D GA P  ++ +G TPL H V   G P C   LL+D    A+I       D +G+  +H AC + N+        L HLL  GAD +  N  G+ +L +
Sbjct:  165 KVSKWLEKGLDPNFHDSDSGECPLTLAVQLEESCELIKVLRSGGAHLDFRTRDGITALHRAVLCRNSAALTTLLDLGASPDYKDSRGLTPLYHSVMVGGAPYCCELLLQD---HATIGMT----DENGWQEIHQACRYGNVQH------LEHLLFYGADMSSQNASGNTALHL 324
[Close]
BLAST of NO15G00070 vs. NCBI_GenBank
Match: XP_018111139.1 (PREDICTED: SH3 and multiple ankyrin repeat domains protein 3-like [Xenopus laevis] >OCT87149.1 hypothetical protein XELAEV_18020844mg [Xenopus laevis])

HSP 1 Score: 68.2 bits (165), Expect = 5.100e-8
Identity = 53/155 (34.19%), Postives = 75/155 (48.39%), Query Frame = 0 
Query:   38 GNTPLWAAAR-RGSYDLVSYLLVSRGVDVDGRTINGSTAIH---HVTDAEVLGLLMDRGAEPVVRNDKGWTPLMHHVR-AGRPECVARLLEDPRVRASIDNVAEEDDFDGFSALHLACCFNNITPTAKLAILRHLLVAGADPTLPNVYGHDSLQI 188
            G  PL  AA+  G  +LV +L  + G  +D RT  G TA+H   H  +  VL  L+D GA P  ++ +G TPL H     G P C   LL D    AS+      +D +G+  +H AC + ++        L HLL  GAD    N  G+ +L +
Sbjct:  327 GECPLTLAAQLEGGAELVKFLR-NGGAHLDFRTREGLTALHKAVHYRNHAVLMTLLDLGASPDYKDSRGLTPLYHSAMVGGDPYCCELLLRD---YASLGC----EDENGWQEIHQACRYGHVQH------LEHLLFYGADMRSQNASGNSALHL 467
[Close]
BLAST of NO15G00070 vs. NCBI_GenBank
Match: XP_020514876.1 (SH3 and multiple ankyrin repeat domains protein 3-like, partial [Labrus bergylta])

HSP 1 Score: 68.2 bits (165), Expect = 5.100e-8
Identity = 53/174 (30.46%), Postives = 82/174 (47.13%), Query Frame = 0 
Query:   19 QLTTWIVRNPRQSEARDSRGNTPLWAAAR-RGSYDLVSYLLVSRGVDVDGRTINGSTAIHHVT---DAEVLGLLMDRGAEPVVRNDKGWTPLMHHVR-AGRPECVARLLEDPRVRASIDNVAEEDDFDGFSALHLACCFNNITPTAKLAILRHLLVAGADPTLPNVYGHDSLQI 188
            +++ W+ +    +      G  PL  A +   S DL+  +L S G  +D RT +G TA+H      ++  L  ++D GA P  ++ +G TPL H     G P C   LL+D    A+I       D +G+  +H AC F N+        L HLL  GAD +  N  G+ +L +
Sbjct:  165 KVSKWLEKGLDPNFHDSDTGECPLTLAVQLEESCDLIK-VLRSGGAHLDFRTRDGITALHRAVLCRNSTSLTTMLDLGASPDYKDSRGLTPLYHSAMVGGAPYCCELLLQD---HATIGMT----DENGWQEIHQACRFGNVQH------LEHLLFYGADMSSQNASGNTALHL 324
[Close]
BLAST of NO15G00070 vs. NCBI_GenBank
Match: XP_007502878.1 (PREDICTED: SH3 and multiple ankyrin repeat domains protein 3 [Monodelphis domestica])

HSP 1 Score: 67.8 bits (164), Expect = 6.700e-8
Identity = 54/155 (34.84%), Postives = 75/155 (48.39%), Query Frame = 0 
Query:   38 GNTPLWAAARR-GSYDLVSYLLVSRGVDVDGRTINGSTAIHHVT---DAEVLGLLMDRGAEPVVRNDKGWTPLMHH-VRAGRPECVARLLEDPRVRASIDNVAEEDDFDGFSALHLACCFNNITPTAKLAILRHLLVAGADPTLPNVYGHDSLQI 188
            G  PL  AA+  G+ DL+  +L + G  +D RT +G TA+H  T   +   L  L+D GA P  ++ +G TPL H  +  G P C   LL D    A I       D +G+  +H AC F ++        L HLL  GAD    N  G+ +L I
Sbjct:  156 GECPLTLAAQMDGATDLLK-VLRNGGAHLDFRTRDGLTALHIATRCRNPNALTTLLDLGASPDYKDSRGLTPLYHSALGGGDPLCCELLLHD---HAQIGTA----DENGWQEIHQACRFGHVQH------LEHLLFYGADMRAQNASGNTALHI 296
The following BLAST results are available for this feature:
BLAST of NO15G00070 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_023808098.12.300e-831.03SH3 and multiple ankyrin repeat domains protein 3-... [more]
XP_023808097.12.300e-831.03SH3 and multiple ankyrin repeat domains protein 3-... [more]
XP_023808096.12.300e-831.03SH3 and multiple ankyrin repeat domains protein 3-... [more]
XP_023808100.12.300e-831.03SH3 and multiple ankyrin repeat domains protein 3-... [more]
XP_023808102.12.300e-831.03SH3 and multiple ankyrin repeat domains protein 3-... [more]
XP_023808101.12.300e-831.03SH3 and multiple ankyrin repeat domains protein 3-... [more]
XP_020469099.13.000e-829.48SH3 and multiple ankyrin repeat domains protein 3-... [more]
XP_018111139.15.100e-834.19PREDICTED: SH3 and multiple ankyrin repeat domains... [more]
XP_020514876.15.100e-830.46SH3 and multiple ankyrin repeat domains protein 3-... [more]
XP_007502878.16.700e-834.84PREDICTED: SH3 and multiple ankyrin repeat domains... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL149nonsL149Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR095ngnoR095Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO15G00070.1NO15G00070.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO15G00070.1NO15G00070.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO15G00070 ID=NO15G00070|Name=NO15G00070|organism=Nannochloropsis oceanica|type=gene|length=906bp
ATGGCAGTTGATCACAAGGCCGAAGATATGAACTTCCTGACCCTAGGGAT
GGCTCAACTCACCACGTGGATTGTCCGAAACCCAAGGCAGTCGGAAGCAA
GGGACTCTCGCGGCAATACGCCCTTGTGGGCCGCCGCTCGGAGAGGAAGC
TACGACCTCGTTTCTTATCTACTGGTATCGAGAGGCGTTGATGTTGACGG
CCGGACGATCAATGGTAGCACAGCCATCCATCACGTAACTGATGCAGAAG
TCCTTGGCCTCTTGATGGACCGAGGTGCTGAACCCGTTGTTCGGAACGAT
AAGGGTTGGACGCCGCTGATGCACCATGTCCGAGCAGGTAGGCCTGAATG
CGTTGCGCGCCTTTTGGAAGATCCAAGGGTGCGCGCCAGCATAGATAATG
TGGCGGAGGAGGACGACTTCGATGGCTTCAGTGCCCTCCACCTTGCATGT
TGTTTCAACAACATCACTCCGACGGCCAAACTTGCCATCCTCCGCCACCT
GCTCGTGGCCGGCGCCGATCCCACCTTGCCCAACGTATATGGACATGACA
GCCTACAGATACTACTGGAGCACCCTCCGGTGGAGCCTCTCCATTTAGCC
TTCGTTGAAGAAGCCAGGGACGCGCAGCGCGCGGCATGTCTCATTAAGAT
TCGCCAGGTGGCAGGTGGGCGGTCAGAGGCACAGTTGCCGGTTAAAAGGG
GTGAACTAAACTTGAAGGAAAGCGAGGAGAAACCATTCCTTGAGCTAGAT
ATGGAAGACGAAGGAGTGCCTTTGATGGGCTTTCTTATGGGCCTGCAGTC
TGAAGAAGGAAGGCAAGGGATGCCGCATGGCGTGTTTGTGGTGGTGATGA
GCATGCTCGTACCGCCGTGGCACGCATTGCACGAGGGGATCAAGGTTGTT
TTATAG
back to top

protein sequence of NO15G00070.1

>NO15G00070.1-protein ID=NO15G00070.1-protein|Name=NO15G00070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=302bp
MAVDHKAEDMNFLTLGMAQLTTWIVRNPRQSEARDSRGNTPLWAAARRGS
YDLVSYLLVSRGVDVDGRTINGSTAIHHVTDAEVLGLLMDRGAEPVVRND
KGWTPLMHHVRAGRPECVARLLEDPRVRASIDNVAEEDDFDGFSALHLAC
CFNNITPTAKLAILRHLLVAGADPTLPNVYGHDSLQILLEHPPVEPLHLA
FVEEARDAQRAACLIKIRQVAGGRSEAQLPVKRGELNLKESEEKPFLELD
MEDEGVPLMGFLMGLQSEEGRQGMPHGVFVVVMSMLVPPWHALHEGIKVV
L*
back to top
Synonyms
Publications