NO15G00070.1, NO15G00070.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G00070.1
Unique NameNO15G00070.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length906
Alignment locationchr15:12004..12909 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:12004..12909 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO15G00070.1 vs.
Match: KUO85524.1 (hypothetical protein AT711_06515, partial [Thermoproteus sp. CIS_19])

HSP 1 Score: 78.2 bits (191), Expect = 4.900e-11
Identity = 59/176 (33.52%), Postives = 85/176 (48.30%), Query Frame = 0 
Query:   17 MAQLTTW-IVRNPRQSEARDSRGNTPLWAAARRGSYDLVSYLLVSRGVDVDGRTINGSTAIHHVTDAEVLGLLMDRGAEPVVRNDKGWTPLMHHVRAGRPECVARLLEDPRVRASIDNVAEEDDFDGFSALHLACCFNNITPTAKLAI------LRHLLVAGADPTLPNVYGHDSL 186
            MA+LT   ++R+     A+DS G TPL  AAR   +   + +LV  G DV+ R   G T +H+  D   +  L+ RGA+P VR+ +G TPL H V +GR      L+E             E + D  +AL L       TP    A+      +  LL +GADP + +V+G   L
Sbjct:  299 MAELTAAALLRHGADPNAKDSEGRTPLHYAARSSLHLKAAEVLVRHGADVNARDRLGRTPLHYAKDGGTVEYLIRRGADPNVRDAEGKTPLHHAVASGRLWAAEALVE----------AGAEVNEDLAAALRL-------TPLHLAALRGGAEEVERLLNSGADPNVRDVFGRTPL 457
The following BLAST results are available for this feature:
BLAST of NO15G00070.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
KUO85524.14.900e-1133.52hypothetical protein AT711_06515, partial [Thermop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G00070NO15G00070Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G00070.1NO15G00070.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G00070.1.cds1NO15G00070.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G00070.1 ID=NO15G00070.1|Name=NO15G00070.1|organism=Nannochloropsis oceanica|type=mRNA|length=906bp
ATGGCAGTTGATCACAAGGCCGAAGATATGAACTTCCTGACCCTAGGGAT
GGCTCAACTCACCACGTGGATTGTCCGAAACCCAAGGCAGTCGGAAGCAA
GGGACTCTCGCGGCAATACGCCCTTGTGGGCCGCCGCTCGGAGAGGAAGC
TACGACCTCGTTTCTTATCTACTGGTATCGAGAGGCGTTGATGTTGACGG
CCGGACGATCAATGGTAGCACAGCCATCCATCACGTAACTGATGCAGAAG
TCCTTGGCCTCTTGATGGACCGAGGTGCTGAACCCGTTGTTCGGAACGAT
AAGGGTTGGACGCCGCTGATGCACCATGTCCGAGCAGGTAGGCCTGAATG
CGTTGCGCGCCTTTTGGAAGATCCAAGGGTGCGCGCCAGCATAGATAATG
TGGCGGAGGAGGACGACTTCGATGGCTTCAGTGCCCTCCACCTTGCATGT
TGTTTCAACAACATCACTCCGACGGCCAAACTTGCCATCCTCCGCCACCT
GCTCGTGGCCGGCGCCGATCCCACCTTGCCCAACGTATATGGACATGACA
GCCTACAGATACTACTGGAGCACCCTCCGGTGGAGCCTCTCCATTTAGCC
TTCGTTGAAGAAGCCAGGGACGCGCAGCGCGCGGCATGTCTCATTAAGAT
TCGCCAGGTGGCAGGTGGGCGGTCAGAGGCACAGTTGCCGGTTAAAAGGG
GTGAACTAAACTTGAAGGAAAGCGAGGAGAAACCATTCCTTGAGCTAGAT
ATGGAAGACGAAGGAGTGCCTTTGATGGGCTTTCTTATGGGCCTGCAGTC
TGAAGAAGGAAGGCAAGGGATGCCGCATGGCGTGTTTGTGGTGGTGATGA
GCATGCTCGTACCGCCGTGGCACGCATTGCACGAGGGGATCAAGGTTGTT
TTATAG
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protein sequence of NO15G00070.1

>NO15G00070.1-protein ID=NO15G00070.1-protein|Name=NO15G00070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=302bp
MAVDHKAEDMNFLTLGMAQLTTWIVRNPRQSEARDSRGNTPLWAAARRGS
YDLVSYLLVSRGVDVDGRTINGSTAIHHVTDAEVLGLLMDRGAEPVVRND
KGWTPLMHHVRAGRPECVARLLEDPRVRASIDNVAEEDDFDGFSALHLAC
CFNNITPTAKLAILRHLLVAGADPTLPNVYGHDSLQILLEHPPVEPLHLA
FVEEARDAQRAACLIKIRQVAGGRSEAQLPVKRGELNLKESEEKPFLELD
MEDEGVPLMGFLMGLQSEEGRQGMPHGVFVVVMSMLVPPWHALHEGIKVV
L*
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mRNA from alignment at chr15:12004..12909-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G00070.1 ID=NO15G00070.1|Name=NO15G00070.1|organism=Nannochloropsis oceanica|type=mRNA|length=906bp|location=Sequence derived from alignment at chr15:12004..12909- (Nannochloropsis oceanica)
ATGGCAGTTGATCACAAGGCCGAAGATATGAACTTCCTGACCCTAGGGAT
GGCTCAACTCACCACGTGGATTGTCCGAAACCCAAGGCAGTCGGAAGCAA
GGGACTCTCGCGGCAATACGCCCTTGTGGGCCGCCGCTCGGAGAGGAAGC
TACGACCTCGTTTCTTATCTACTGGTATCGAGAGGCGTTGATGTTGACGG
CCGGACGATCAATGGTAGCACAGCCATCCATCACGTAACTGATGCAGAAG
TCCTTGGCCTCTTGATGGACCGAGGTGCTGAACCCGTTGTTCGGAACGAT
AAGGGTTGGACGCCGCTGATGCACCATGTCCGAGCAGGTAGGCCTGAATG
CGTTGCGCGCCTTTTGGAAGATCCAAGGGTGCGCGCCAGCATAGATAATG
TGGCGGAGGAGGACGACTTCGATGGCTTCAGTGCCCTCCACCTTGCATGT
TGTTTCAACAACATCACTCCGACGGCCAAACTTGCCATCCTCCGCCACCT
GCTCGTGGCCGGCGCCGATCCCACCTTGCCCAACGTATATGGACATGACA
GCCTACAGATACTACTGGAGCACCCTCCGGTGGAGCCTCTCCATTTAGCC
TTCGTTGAAGAAGCCAGGGACGCGCAGCGCGCGGCATGTCTCATTAAGAT
TCGCCAGGTGGCAGGTGGGCGGTCAGAGGCACAGTTGCCGGTTAAAAGGG
GTGAACTAAACTTGAAGGAAAGCGAGGAGAAACCATTCCTTGAGCTAGAT
ATGGAAGACGAAGGAGTGCCTTTGATGGGCTTTCTTATGGGCCTGCAGTC
TGAAGAAGGAAGGCAAGGGATGCCGCATGGCGTGTTTGTGGTGGTGATGA
GCATGCTCGTACCGCCGTGGCACGCATTGCACGAGGGGATCAAGGTTGTT
TTATAG
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Coding sequence (CDS) from alignment at chr15:12004..12909-

>NO15G00070.1 ID=NO15G00070.1|Name=NO15G00070.1|organism=Nannochloropsis oceanica|type=CDS|length=906bp|location=Sequence derived from alignment at chr15:12004..12909- (Nannochloropsis oceanica)
ATGGCAGTTGATCACAAGGCCGAAGATATGAACTTCCTGACCCTAGGGAT
GGCTCAACTCACCACGTGGATTGTCCGAAACCCAAGGCAGTCGGAAGCAA
GGGACTCTCGCGGCAATACGCCCTTGTGGGCCGCCGCTCGGAGAGGAAGC
TACGACCTCGTTTCTTATCTACTGGTATCGAGAGGCGTTGATGTTGACGG
CCGGACGATCAATGGTAGCACAGCCATCCATCACGTAACTGATGCAGAAG
TCCTTGGCCTCTTGATGGACCGAGGTGCTGAACCCGTTGTTCGGAACGAT
AAGGGTTGGACGCCGCTGATGCACCATGTCCGAGCAGGTAGGCCTGAATG
CGTTGCGCGCCTTTTGGAAGATCCAAGGGTGCGCGCCAGCATAGATAATG
TGGCGGAGGAGGACGACTTCGATGGCTTCAGTGCCCTCCACCTTGCATGT
TGTTTCAACAACATCACTCCGACGGCCAAACTTGCCATCCTCCGCCACCT
GCTCGTGGCCGGCGCCGATCCCACCTTGCCCAACGTATATGGACATGACA
GCCTACAGATACTACTGGAGCACCCTCCGGTGGAGCCTCTCCATTTAGCC
TTCGTTGAAGAAGCCAGGGACGCGCAGCGCGCGGCATGTCTCATTAAGAT
TCGCCAGGTGGCAGGTGGGCGGTCAGAGGCACAGTTGCCGGTTAAAAGGG
GTGAACTAAACTTGAAGGAAAGCGAGGAGAAACCATTCCTTGAGCTAGAT
ATGGAAGACGAAGGAGTGCCTTTGATGGGCTTTCTTATGGGCCTGCAGTC
TGAAGAAGGAAGGCAAGGGATGCCGCATGGCGTGTTTGTGGTGGTGATGA
GCATGCTCGTACCGCCGTGGCACGCATTGCACGAGGGGATCAAGGTTGTT
TTATAG
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Synonyms
Publications