NO14G02920, NO14G02920 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO14G02920
Unique Name	NO14G02920
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	3406
Alignment location	chr14:864206..867611 +

Link to JBrowse

Properties


Property Name	Value
Description	Ubiquilin

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr14	genome	chr14:864206..867611 +

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
PRJNA769958	2024-08-13
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
PXD016699	2021-01-08
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
PXD010030	2020-03-16
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR029071	Ubiquitin-rel_dom
IPR015496	Ubiquilin
IPR000626	Ubiquitin-like
IPR006636	STI1_HS-bd
IPR019956	Ubiquitin

Homology

[Close]

BLAST of NO14G02920 vs. NCBI_GenBank
Match: EWM24518.1 (ubiquitin family expressed [Nannochloropsis gaditana])

HSP 1 Score: 113.2 bits (282), Expect = 1.900e-21
Identity = 56/77 (72.73%), Postives = 67/77 (87.01%), Query Frame = 0

Query:    1 MAPITVHVKCANAKKYTVTVESDLKVPDLKAAIETASEIPAVQQRLIHKGKVLKDEEALSSYSIEDESTVHLVRASS 78
            MAPITVH+KCANAKKY+V+VE D +V DLK AIE  S+IPA  QRLIHKGKVLKDEE L++Y+I+++STVHLVRA S
Sbjct:   43 MAPITVHIKCANAKKYSVSVEQDKRVSDLKFAIEAMSDIPATHQRLIHKGKVLKDEEGLATYTIDNDSTVHLVRAPS 119

[Close]

BLAST of NO14G02920 vs. NCBI_GenBank
Match: CDY31374.1 (BnaA07g03090D [Brassica napus])

HSP 1 Score: 90.5 bits (223), Expect = 1.400e-14
Identity = 109/347 (31.41%), Postives = 137/347 (39.48%), Query Frame = 0

Query:    2 APITVHVKCANAKKYTVTVESDLKVPDLKAAIETASEIPAVQQRLIHKGKVLKDEEALSSYSIEDESTVHLVRASSSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPFAAMXXXXXXXXXXXXXXXXXXXXXXXXAGPNPLFGGFPGXXXXXXXXXXXXXXXXXXXXXXXLMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRQAMETARNPAAREQMMRSNDLAMSQIENHPEGFNALRRMYHEIQEPMMDA-------------------IGNSGAXXXXXXXXXXXXXXXXXXXXSR--PNTNALPNPW 328
            A ++V+V+C+N  K++V    D  V   K  +   SE+PA QQRLI+KG++LKD+++L SY +E + TVH+VR S+ +                                      P +A                          G NPL GG                          L                    XXXX  XXXX  XXXXXXXXXXXXXX         LRQ ME ARNP    +MMR+ D AMS IE+ PEGFN LRRMY  +QEP+M+A                   +GN G                         PN N LPNPW
Sbjct:   14 ATVSVNVRCSNGSKFSVRTSLDSTVGAFKELVAQHSEVPANQQRLIYKGRILKDDQSLLSYGLEADHTVHMVRGSAPSSSP-----------------------------------PPSAPVNQPTPPSVTRGVGSNAGEALFPGLGFNPLGGG------NAMSGLFGAGLPDLDQAQQQLAQNPNMIRDMMNTPAIQNLMXXXXFMXXXXMSXXXXXXXXXXXXXXGHVLNDPSILRQTMEAARNPELMREMMRNTDRAMSNIESMPEGFNHLRRMYENVQEPLMNATTMSGNAGNNAASNPFAALLGNQGVTTQGGDASNNSTTPSAETGTGNGIPNANPLPNPW 319

[Close]

BLAST of NO14G02920 vs. NCBI_GenBank
Match: XP_009121150.1 (PREDICTED: ubiquitin domain-containing protein DSK2b [Brassica rapa] >XP_009121151.1 PREDICTED: ubiquitin domain-containing protein DSK2b [Brassica rapa])

HSP 1 Score: 90.5 bits (223), Expect = 1.400e-14
Identity = 109/347 (31.41%), Postives = 137/347 (39.48%), Query Frame = 0

Query:    2 APITVHVKCANAKKYTVTVESDLKVPDLKAAIETASEIPAVQQRLIHKGKVLKDEEALSSYSIEDESTVHLVRASSSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPFAAMXXXXXXXXXXXXXXXXXXXXXXXXAGPNPLFGGFPGXXXXXXXXXXXXXXXXXXXXXXXLMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRQAMETARNPAAREQMMRSNDLAMSQIENHPEGFNALRRMYHEIQEPMMDA-------------------IGNSGAXXXXXXXXXXXXXXXXXXXXSR--PNTNALPNPW 328
            A ++V+V+C+N  K++V    D  V   K  +   SE+PA QQRLI+KG++LKD+++L SY +E + TVH+VR S+ +                                      P +A                          G NPL GG                          L                    XXXX  XXXX  XXXXXXXXXXXXXX         LRQ ME ARNP    +MMR+ D AMS IE+ PEGFN LRRMY  +QEP+M+A                   +GN G                         PN N LPNPW
Sbjct:   14 ATVSVNVRCSNGSKFSVRTSLDSTVGAFKELVAQHSEVPANQQRLIYKGRILKDDQSLLSYGLEADHTVHMVRGSAPSSSP-----------------------------------PPSAPVNQPTPPSVTRGVGSNAGEALFPGLGFNPLGGG------NAMSGLFGAGLPDLDQAQQQLAQNPNMIRDMMNTPAIQNLMXXXXFMXXXXMSXXXXXXXXXXXXXXGHVLNDPSILRQTMEAARNPELMREMMRNTDRAMSNIESMPEGFNHLRRMYENVQEPLMNATTMSGNAGNNAASNPFAALLGNQGVTTQGSDASNNSTTPSAETGTGNGIPNANPLPNPW 319

[Close]

BLAST of NO14G02920 vs. NCBI_GenBank
Match: XP_013598682.1 (PREDICTED: ubiquitin domain-containing protein DSK2b-like [Brassica oleracea var. oleracea] >XP_013598683.1 PREDICTED: ubiquitin domain-containing protein DSK2b-like [Brassica oleracea var. oleracea])

HSP 1 Score: 90.5 bits (223), Expect = 1.400e-14
Identity = 113/347 (32.56%), Postives = 141/347 (40.63%), Query Frame = 0

Query:    2 APITVHVKCANAKKYTVTVESDLKVPDLKAAIETASEIPAVQQRLIHKGKVLKDEEALSSYSIEDESTVHLVRASSSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPFAAMXXXXXXXXXXXXXXXXXXXXXXXXAGPNPLFGGFPGXXXXXXXXXXXXXXXXXXXXXXXLMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRQAMETARNPAAREQMMRSNDLAMSQIENHPEGFNALRRMYHEIQEPMMDA-------------------IGNSGAXXXXXXXXXXXXXXXXXXXXSR--PNTNALPNPW 328
            A ++V+V+C+N  K++V    D  V   K  +   SE+PA QQRLI+KG++LKD+++L SY +E + TVH+VR S+ +                                      P +A                          G NPL GG                          L                    XXXXXXXXXXXXXXXXXXXXXXXXXX         LRQ ME ARNP    +MMR+ D AMS IE+ PEGFN LRRMY  +QEP+M+A                   +GN G                         PN N LPNPW
Sbjct:   24 ATVSVNVRCSNGSKFSVRTSLDSTVGAFKELVAQNSEVPANQQRLIYKGRILKDDQSLVSYGLEADHTVHMVRGSAPSSSP-----------------------------------PPSAPVNQPTPPSVTRGVGSNAGEALFPGLGFNPLGGG----GGNAMSGLFGAGLPDLEQAQQQLAQNPNMIRDMMNTPAIQNLMXXXXXXXXXXXXXXXXXXXXXXXXXXGHVLNDPSILRQTMEAARNPELMREMMRNTDRAMSNIESMPEGFNHLRRMYENVQEPLMNATTMSGNAGNNAASNPFAALLGNQGVTTQGSDASNNSTTPSAETGTGNGIPNANPLPNPW 331

[Close]

BLAST of NO14G02920 vs. NCBI_GenBank
Match: XP_013724930.1 (ubiquitin domain-containing protein DSK2b isoform X1 [Brassica napus] >XP_022549183.1 ubiquitin domain-containing protein DSK2b isoform X1 [Brassica napus])

HSP 1 Score: 90.5 bits (223), Expect = 1.400e-14
Identity = 109/347 (31.41%), Postives = 137/347 (39.48%), Query Frame = 0

Query:    2 APITVHVKCANAKKYTVTVESDLKVPDLKAAIETASEIPAVQQRLIHKGKVLKDEEALSSYSIEDESTVHLVRASSSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPFAAMXXXXXXXXXXXXXXXXXXXXXXXXAGPNPLFGGFPGXXXXXXXXXXXXXXXXXXXXXXXLMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRQAMETARNPAAREQMMRSNDLAMSQIENHPEGFNALRRMYHEIQEPMMDA-------------------IGNSGAXXXXXXXXXXXXXXXXXXXXSR--PNTNALPNPW 328
            A ++V+V+C+N  K++V    D  V   K  +   SE+PA QQRLI+KG++LKD+++L SY +E + TVH+VR S+ +                                      P +A                          G NPL GG                          L                    XXXX  XXXX  XXXXXXXXXXXXXX         LRQ ME ARNP    +MMR+ D AMS IE+ PEGFN LRRMY  +QEP+M+A                   +GN G                         PN N LPNPW
Sbjct:   14 ATVSVNVRCSNGSKFSVRTSLDSTVGAFKELVAQHSEVPANQQRLIYKGRILKDDQSLLSYGLEADHTVHMVRGSAPSSSP-----------------------------------PPSAPVNQPTPPSVTRGVGSNAGEALFPGLGFNPLGGG------NAMSGLFGAGLPDLDQAQQQLAQNPNMIRDMMNTPAIQNLMXXXXFMXXXXMSXXXXXXXXXXXXXXGHVLNDPSILRQTMEAARNPELMREMMRNTDRAMSNIESMPEGFNHLRRMYENVQEPLMNATTMSGNAGNNAASNPFAALLGNQGVTTQGGDASNNSTTPSAETGTGNGIPNANPLPNPW 319

[Close]

BLAST of NO14G02920 vs. NCBI_GenBank
Match: XP_013724931.1 (ubiquitin domain-containing protein DSK2b isoform X2 [Brassica napus])

HSP 1 Score: 90.5 bits (223), Expect = 1.400e-14
Identity = 109/347 (31.41%), Postives = 137/347 (39.48%), Query Frame = 0

Query:    2 APITVHVKCANAKKYTVTVESDLKVPDLKAAIETASEIPAVQQRLIHKGKVLKDEEALSSYSIEDESTVHLVRASSSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPFAAMXXXXXXXXXXXXXXXXXXXXXXXXAGPNPLFGGFPGXXXXXXXXXXXXXXXXXXXXXXXLMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRQAMETARNPAAREQMMRSNDLAMSQIENHPEGFNALRRMYHEIQEPMMDA-------------------IGNSGAXXXXXXXXXXXXXXXXXXXXSR--PNTNALPNPW 328
            A ++V+V+C+N  K++V    D  V   K  +   SE+PA QQRLI+KG++LKD+++L SY +E + TVH+VR S+ +                                      P +A                          G NPL GG                          L                    XXXX  XXXX  XXXXXXXXXXXXXX         LRQ ME ARNP    +MMR+ D AMS IE+ PEGFN LRRMY  +QEP+M+A                   +GN G                         PN N LPNPW
Sbjct:   14 ATVSVNVRCSNGSKFSVRTSLDSTVGAFKELVAQHSEVPANQQRLIYKGRILKDDQSLLSYGLEADHTVHMVRGSAPSSSP-----------------------------------PPSAPVNQPTPPSVTRGVGSNAGEALFPGLGFNPLGGG------NAMSGLFGAGLPDLDQAQQQLAQNPNMIRDMMNTPAIQNLMXXXXFMXXXXMSXXXXXXXXXXXXXXGHVLNDPSILRQTMEAARNPELMREMMRNTDRAMSNIESMPEGFNHLRRMYENVQEPLMNATTMSGNAGNNAASNPFAALLGNQGVTTQGGDASNNSTTPSAETGTGNGIPNANPLPNPW 319

[Close]

BLAST of NO14G02920 vs. NCBI_GenBank
Match: ASM48258.1 (ubiquilin1-like protein [Zea mays])

HSP 1 Score: 90.5 bits (223), Expect = 1.400e-14
Identity = 136/344 (39.53%), Postives = 164/344 (47.67%), Query Frame = 0

Query:    5 TVHVKCANAKKYTVTVESDLKVPDLKAAIETASEIPAVQQRLIHKGKVLKDEEALSSYSIEDESTVHLVRASSSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPFAAMXXXXXXXXXXXXXXXXXXXXXXXXAGPNPLFGGFPGXXXXXXXXXXXXXXXXXXXXXXXLMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRQAMETARNPAAREQMMRSNDLAMSQIENHPEGFNALRRMYHEIQEPMMDA-----------------IGNSGA---XXXXXXXXXXXXXXXXXXXXSRPNTNALPNPWA 329
            T+H++CAN  K+TV  +    V   K  +  + ++PA QQRLI+KG++LKDE+ L SY +E + T+HLVR  +                                       NP A+                          G   LF G                          L                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    LRQ +E ARNP    +MMR+ D AMS IE+ PEGFN LRRMY  +QEP ++A                 +GN G+     XXXXXXXXXXXXXXXXXX  PNTN LPNPW+
Sbjct:   27 TLHIRCANGSKFTVQTDLGATVGAFKEVLSGSCDVPAPQQRLIYKGRILKDEQTLDSYGVETDHTIHLVRGVA----------------------------PPAASSAPAAANPLASF-----------------TPSSGSAGGLGGLFPGVDAPGNDRPSGIFRPGFPELEQVEQHLSQNPNLMREIMNMPAMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPSVLRQTLEAARNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATTMGGEGSTASNPFSALLGNQGSSQPGQXXXXXXXXXXXXXXXXXXPAPNTNPLPNPWS 325

[Close]

BLAST of NO14G02920 vs. NCBI_GenBank
Match: AQL06283.1 (Ubiquitin domain-containing protein DSK2b [Zea mays])

HSP 1 Score: 89.7 bits (221), Expect = 2.300e-14
Identity = 136/344 (39.53%), Postives = 164/344 (47.67%), Query Frame = 0

Query:    5 TVHVKCANAKKYTVTVESDLKVPDLKAAIETASEIPAVQQRLIHKGKVLKDEEALSSYSIEDESTVHLVRASSSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPFAAMXXXXXXXXXXXXXXXXXXXXXXXXAGPNPLFGGFPGXXXXXXXXXXXXXXXXXXXXXXXLMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRQAMETARNPAAREQMMRSNDLAMSQIENHPEGFNALRRMYHEIQEPMMDA-----------------IGNSGA---XXXXXXXXXXXXXXXXXXXXSRPNTNALPNPWA 329
            T+H++CAN  K+TV  +    V   K  +  +  +PA QQRLI+KG++LKDE+ L SY +E + T+HLVR  ++                                      NP A+                          G   LF G                          L                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    LRQ +E ARNP    +MMR+ D AMS IE+ PEGFN LRRMY  +QEP ++A                 +GN G+     XXXXXXXXXXXXXXXXXX  PNTN LPNPW+
Sbjct:   27 TLHIRCANGSKFTVQTDLGATVGAFKEVLSGSCGVPAPQQRLIYKGRILKDEQTLDSYGVETDHTIHLVRGVAT----------------------------PAASSAPAAANPLASF-----------------TPSSGPAGGLGGLFPGVDAPGNDRPSGIFRPGFPELEQVEQHLSQNPNLMREIMNMPAMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPSVLRQTLEAARNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATTMGGEGSTASNPFSALLGNQGSSQPGQXXXXXXXXXXXXXXXXXXPAPNTNPLPNPWS 325

[Close]

BLAST of NO14G02920 vs. NCBI_GenBank
Match: ACN33873.1 (unknown [Zea mays] >ACR38657.1 unknown [Zea mays] >AQL06288.1 Ubiquitin domain-containing protein DSK2b [Zea mays])

HSP 1 Score: 89.7 bits (221), Expect = 2.300e-14
Identity = 136/344 (39.53%), Postives = 164/344 (47.67%), Query Frame = 0

Query:    5 TVHVKCANAKKYTVTVESDLKVPDLKAAIETASEIPAVQQRLIHKGKVLKDEEALSSYSIEDESTVHLVRASSSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPFAAMXXXXXXXXXXXXXXXXXXXXXXXXAGPNPLFGGFPGXXXXXXXXXXXXXXXXXXXXXXXLMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRQAMETARNPAAREQMMRSNDLAMSQIENHPEGFNALRRMYHEIQEPMMDA-----------------IGNSGA---XXXXXXXXXXXXXXXXXXXXSRPNTNALPNPWA 329
            T+H++CAN  K+TV  +    V   K  +  +  +PA QQRLI+KG++LKDE+ L SY +E + T+HLVR  ++                                      NP A+                          G   LF G                          L                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    LRQ +E ARNP    +MMR+ D AMS IE+ PEGFN LRRMY  +QEP ++A                 +GN G+     XXXXXXXXXXXXXXXXXX  PNTN LPNPW+
Sbjct:   27 TLHIRCANGSKFTVQTDLGATVGAFKEVLSGSCGVPAPQQRLIYKGRILKDEQTLDSYGVETDHTIHLVRGVAT----------------------------PAASSAPAAANPLASF-----------------TPSSGPAGGLGGLFPGVDAPGNDRPSGIFRPGFPELEQVEQHLSQNPNLMREIMNMPAMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPSVLRQTLEAARNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATTMGGEGSTASNPFSALLGNQGSSQPGQXXXXXXXXXXXXXXXXXXPAPNTNPLPNPWS 325

[Close]

BLAST of NO14G02920 vs. NCBI_GenBank
Match: XP_013664386.1 (ubiquitin domain-containing protein DSK2b-like [Brassica napus] >XP_013664387.1 ubiquitin domain-containing protein DSK2b-like [Brassica napus] >XP_013664388.1 ubiquitin domain-containing protein DSK2b-like [Brassica napus])

HSP 1 Score: 89.4 bits (220), Expect = 3.000e-14
Identity = 113/347 (32.56%), Postives = 142/347 (40.92%), Query Frame = 0

Query:    2 APITVHVKCANAKKYTVTVESDLKVPDLKAAIETASEIPAVQQRLIHKGKVLKDEEALSSYSIEDESTVHLVRASSSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPFAAMXXXXXXXXXXXXXXXXXXXXXXXXAGPNPLFGGFPGXXXXXXXXXXXXXXXXXXXXXXXLMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRQAMETARNPAAREQMMRSNDLAMSQIENHPEGFNALRRMYHEIQEPMMDA-------------------IGNSGAXXXXXXXXXXXXXXXXXXXXSR--PNTNALPNPW 328
            A ++V+V+C+N  K++V    D  V   K  +   SE+PA QQRLI+KG++LKD+++L SY +E + TVH+VR S+ +                                      P +A                          G NPL GG                          L                    XXXXXXXXXXXXXXXXXXXXXXXXXXX        LRQ +E ARNP    +MMR+ D AMS IE+ PEGFN LRRMY  +QEP+M+A                   +GN G                         PN N LPNPW
Sbjct:   24 ATVSVNVRCSNGSKFSVRTSLDSTVGAFKELVAQHSEVPANQQRLIYKGRILKDDQSLLSYGLEADHTVHMVRGSAPSSSP-----------------------------------PPSAPVNQPTPPSVTRGVGSNAGEALFPGLGFNPLGGG----GGNAMSGLFGAGLPDLEQAQQQLAQNPNMIRDMMNTPAIQNLMXXXXXXXXXXXXXXXXXXXXXXXXXXXHVLNDPSILRQTLEAARNPELMREMMRNTDRAMSNIESMPEGFNHLRRMYENVQEPLMNATTMSGNAGNNAASNPFAALLGNQGVTTQGSDASNNSTTPSAETGTGNGIPNANPLPNPW 331

The following BLAST results are available for this feature:

BLAST of NO14G02920 vs. NCBI_GenBank

BLAST of NO14G02920 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
EWM24518.1	1.900e-21	72.73	ubiquitin family expressed [Nannochloropsis gadita...	[more]
CDY31374.1	1.400e-14	31.41	BnaA07g03090D [Brassica napus]	[more]
XP_009121150.1	1.400e-14	31.41	PREDICTED: ubiquitin domain-containing protein DSK...	[more]
XP_013598682.1	1.400e-14	32.56	PREDICTED: ubiquitin domain-containing protein DSK...	[more]
XP_013724930.1	1.400e-14	31.41	ubiquitin domain-containing protein DSK2b isoform ...	[more]
XP_013724931.1	1.400e-14	31.41	ubiquitin domain-containing protein DSK2b isoform ...	[more]
ASM48258.1	1.400e-14	39.53	ubiquilin1-like protein [Zea mays]	[more]
AQL06283.1	2.300e-14	39.53	Ubiquitin domain-containing protein DSK2b [Zea may...	[more]
ACN33873.1	2.300e-14	39.53	unknown [Zea mays] >ACR38657.1 unknown [Zea mays] ...	[more]
XP_013664386.1	3.000e-14	32.56	ubiquitin domain-containing protein DSK2b-like [Br...	[more]

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Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL138	nonsL138	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR069	ncniR069	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR023	ngnoR023	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK002519	NSK002519	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO14G02920.1	NO14G02920.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide
NO14G02920.2	NO14G02920.2-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|39680	gene_5871	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
Naga_100447g3	gene5960	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO14G02920.1	NO14G02920.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA
NO14G02920.2	NO14G02920.2	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence
protein sequence

gene sequence

>NO14G02920 ID=NO14G02920|Name=NO14G02920|organism=Nannochloropsis oceanica|type=gene|length=3406bp
CTTAGGATGGGCCTTTTACTTATTTTTATTTGCGTTTGCTCTTAATCCTC
GAAAGGGTTGGCTGCCATCGACATTTATCGCAAACTCCGGACCATGTATG
GGGCTCGGGAGTCCTGCCTGAGCAAAGCTTGGACAGGTCCTCCCTCGAAA
ACATCCTCGCCCTTCTCCTCCAGCAGCCTTTCCATCAACTCTTTATTTCG
CACTTTCATAATATCCTCAAGCCTGAACACCTGAATAACTGTCGGGTAGT
AAATGATTGACCAGGATTCCCTTTCAGGCATGAGGCCTCTCTCACTATCA
GCACTCATCTGCTGCTGCAGGTGCGCCTTTTTCATGCACATGAATTTCAT
ACTCCCTTCCCCTGCCGCCCCCGCCCGCACAATACTCCCCACTTCTGTTC
CCTGGCATGGCTGGTATCGACACTTGAGGCTCGTATGCCGGCTGGTGGGT
TCACATTTCTCATTAATATCACATTGTGCATTGCGATCACTCCAGAACTC
CTGAGGCAAGATTCAGCAAAAAATCGGGATAAAAGATTTACGGTAGCTCT
AAAAATAAAGCGCACAAATAACTCACGCACAAGCCTGTCTTAGTAAAGTC
CCACTGTAACATCGGGGCTGCGTAGAGCCCAAGGCCCTTTTTTGTAAAGC
CAGCAACTCATAACGGCTTTTCAGCTTGTCCGGGGTCCGGGGAACAATCG
AAGTCTGAGAGCCTTTTTGTTGCTTGGCCATGTGGAAGCACAAGCATGTG
CCCCCAACTGTAATCTGCCCGCGCTGGTCTGCAACAGAGAGAACTGGCCT
TGGCACCACGCTGGGACAATGGGGTTCGCAGTGTCCTTGAAGTAGCCCAA
CTATGATGTGCGTCATTTTGGAGCTGAGATGAGCGTGTGCTGGCTTCTAG
GCCTTTTGTCACACTTACCCCATCCCCTCTATGACCCCTTTATCCCCAAT
CACAGACACATACCACCTCTGAGTGGCAAGGATGGCACCCATCACTGTCC
ACGTCAAGTGCGCCAACGCCAAGAAGTACACGGTCACGGTGGAAAGTGAT
CTCAAGGTCCCCGACCTGAAGgtaagaggaaggggagggaggagggagag
agacgtgtgtaaatgcgtgagggcaagagcacagtttggcttctcatgaa
gtataagatatcacttttgagctataggtttgcgaatgtgagtgcaagaa
agagacggaagggggaagagggattggagagtggagtgaccccggcacaa
cgcaatagcacgaagctgcactaggtagagattagagatgtctgggtcat
tccttccaacgcatgcatttatatacctgcatgtcaaggcggtctcacca
ctgaaagactgaaagaccgaaaaggggacccgtacactcacacacccctc
ctcccctcccaccacgtcgtcctcgcctcctacagGCGGCCATCGAAACG
GCCTCGGAAATCCCCGCCGTGCAACAACGCCTCATCCACAAGGGTAAGGT
CCTCAAGGACGAGGAAGCCCTCTCTTCCTACTCCATCGAGGACGAGTCAA
CAGTCCACCTCGTCCGGGCCTCTTCTTCTACCCCATCCTCTGCCTCTCCC
TCCCCCTCTTTGGCAGCTGCAGCCGCTGCTTCTTCCGCCCCCACTGCCAC
CAACATTCCTACTGCCACCCCTGTCTATACACCGACTCCCGGCAACCCCT
TTGCCGCCATGATGGGAGGAATGATGGGGGGTATGCCAGGACAGCCGCAG
CCGCAGCAGCCGCCGCAGCAGCCGCCGTTTCAAGCGGGTCCGAACCCCCT
GTTCGGAGGCTTCCCGGGGATGGGGGGGGTGGGGGGGATGGGTGCTGGCT
TTCCGACGCCTCAGCAACAGCAGCAGATGCAGCAGCAGTTGATGCAGgtg
aggacaaggagggagggaaggagggaccgaaggaaggagggctggggggg
gcgttgtcaaaagcagtccgtgctcacattgtccctccctccctcccttc
cgtcctccctccctcccacatccttctagAACCCTGAGATGATGGACCAG
ATGATGCAGTCGCCGTTGATGCAACAAATGATGAGCTCGCCTGAACTCAT
GCGCAGCCTTATGATGGCCAATCCTCAGgtatgcacgcccccctccctcc
ccccctccctcccccctccctccttgcttcgtctcgttttgatgtttgct
cacatcgggataggcaacattcagaaagggctcctcctttctccttcctg
tccttctctgcctctttcctcatcaccgtactctaccctcctccctttcc
tcccctccctccctccctccctccctccctccccagATGCGCGCCCTCCT
CGACGCCAACCCTCAACTGAACCACATCCTCAGCGACCCGGCGATGCTTC
GTCAGGCCATGGAAACTGCCCGCAATCCCGCCGCACGCGAACAAATGATG
CGGAGCAACgtacgtgtgcccccctccccccttcctttcctctttccctc
cctccttcccccccatagatcctcccatttcttccccttcttgaccgtgt
gacgatgcctcttaaaatgacgtccacctgtccacgccaattacaattgt
atgcccgatttttccaaccctccctccttccctccctccctccctccctc
tccaccccagGACCTGGCCATGTCCCAGATCGAGAACCATCCCGAGGGTT
TCAATGCCCTAAGGCGGATGTATCACGAGATCCAAGAGCCCATGATGGAC
GCCATAGGGAACAGgtagggaggaggaagggaaggaaggggaggagtaga
aagactttgcgagttccagggctcacgcagatacacatacacacacacct
cctctcccagCGGTGCAACCGACGCCAGCAGCAGCAGCAGCAGCAGCAGT
GGCACGACAAACAGCACTATCTCCGGCTCTCGTCCCAACACGAACGCCCT
TCCCAACCCCTGGGCCTCGGCCGCCTCCGCCTCCTCCTCCGCCCCTCCCT
CCCTCCCGCCTCCCTCGGGAGGCGCAGCGCCCGTGCCGTTTCTTCCCATG
TTTCCTCCGCAGCAGCAGCCGGGACAGCAGCAGCAGCAGCAGCCGGGTGG
GCAGGCGCCCTTAGCGAACCCATTCGCGGCGATGATGGGCGGAGGGATGG
GCGGAGGGATGGGCGGAGGGATGGGCGGAGGGATGGGCGGAGGACCGGGG
GCGATGCCGGGTATGCCAGgtaactagggagggagggagggagggaggga
gggagggggggagggagggaaagagggaggaaaacagtaccgggatagaa
tgaatcaccatcagcttatctttcctcctcccttccctccttccctccct
ctctctcttcctcagGCGCCCCCCCCCCGACATGGAGCAAGTCCTACAGA
CGATGA

protein sequence of NO14G02920.1

>NO14G02920.1-protein ID=NO14G02920.1-protein|Name=NO14G02920.1|organism=Nannochloropsis oceanica|type=polypeptide|length=426bp
MAPITVHVKCANAKKYTVTVESDLKVPDLKAAIETASEIPAVQQRLIHKG
KVLKDEEALSSYSIEDESTVHLVRASSSTPSSASPSPSLAAAAAASSAPT
ATNIPTATPVYTPTPGNPFAAMMGGMMGGMPGQPQPQQPPQQPPFQAGPN
PLFGGFPGMGGVGGMGAGFPTPQQQQQMQQQLMQNPEMMDQMMQSPLMQQ
MMSSPELMRSLMMANPQMRALLDANPQLNHILSDPAMLRQAMETARNPAA
REQMMRSNDLAMSQIENHPEGFNALRRMYHEIQEPMMDAIGNSGATDASS
SSSSSSGTTNSTISGSRPNTNALPNPWASAASASSSAPPSLPPPSGGAAP
VPFLPMFPPQQQPGQQQQQQPGGQAPLANPFAAMMGGGMGGGMGGGMGGG
MGGGPGAMPGMPGAPPPTWSKSYRR*

protein sequence of NO14G02920.2

>NO14G02920.2-protein ID=NO14G02920.2-protein|Name=NO14G02920.2|organism=Nannochloropsis oceanica|type=polypeptide|length=305bp
MMGGMMGGMPGQPQPQQPPQQPPFQAGPNPLFGGFPGMGGVGGMGAGFPT
PQQQQQMQQQLMQNPEMMDQMMQSPLMQQMMSSPELMRSLMMANPQMRAL
LDANPQLNHILSDPAMLRQAMETARNPAAREQMMRSNDLAMSQIENHPEG
FNALRRMYHEIQEPMMDAIGNSGATDASSSSSSSSGTTNSTISGSRPNTN
ALPNPWASAASASSSAPPSLPPPSGGAAPVPFLPMFPPQQQPGQQQQQQP
GGQAPLANPFAAMMGGGMGGGMGGGMGGGMGGGPGAMPGMPGAPPPTWSK
SYRR*

Synonyms

Publications