NO14G02920.1, NO14G02920.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO14G02920.1
Unique Name	NO14G02920.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2259
Alignment location	chr14:864206..867611 +

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr14	genome	chr14:864206..867611 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO14G02920.1 vs.
Match: EWM24518.1 (ubiquitin family expressed [Nannochloropsis gaditana])

HSP 1 Score: 213.0 bits (541), Expect = 1.800e-51
Identity = 135/222 (60.81%), Postives = 162/222 (72.97%), Query Frame = 0

Query:    1 MAPITVHVKCANAKKYTVTVESDLKVPDLKAAIETASEIPAVQQRLIHKGKVLKDEEALSSYSIEDESTVHLVRASSSTPSSASPSPSLAAAAAASSAPTATNIPTATPVYTPTPG----NPFAAMMGGMMGGMPGQPQPQQPPQQPPFQAGPNPLFGGFPGMGGVGGMGAGFPTPQQQQQMQQQLMQNPEMMDQMMQSPLMQQMMSSPELMRSLMMANPQM 219
            MAPITVH+KCANAKKY+V+VE D +V DLK AIE  S+IPA  QRLIHKGKVLKDEE L++Y+I+++STVHLVRA S+T +SA P       A+  + P   +  T  P + P  G    NPFAA+MGG  GG+ G P        PPFQAG NP+FGG  GMG       GFP+ Q+QQ+MQQQLMQNPEMMDQ+MQSPLMQQMM+SPELMRS+MMANPQ+
Sbjct:   43 MAPITVHIKCANAKKYSVSVEQDKRVSDLKFAIEAMSDIPATHQRLIHKGKVLKDEEGLATYTIDNDSTVHLVRAPSATTTSAPP-------ASTHTVPPPPSSTTPAPPFPPPTGSGATNPFAALMGGAGGGLGGSPG-----STPPFQAGSNPMFGGL-GMGP-----GGFPSAQEQQRMQQQLMQNPEMMDQVMQSPLMQQMMNSPELMRSMMMANPQI 246

The following BLAST results are available for this feature:

BLAST of NO14G02920.1 vs.

BLAST of NO14G02920.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM24518.1	1.800e-51	60.81	ubiquitin family expressed [Nannochloropsis gadita...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO14G02920	NO14G02920	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO14G02920.1	NO14G02920.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO14G02920.1.cds1	NO14G02920.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO14G02920.1.cds2	NO14G02920.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO14G02920.1.cds3	NO14G02920.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO14G02920.1.cds4	NO14G02920.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO14G02920.1.cds5	NO14G02920.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO14G02920.1.cds6	NO14G02920.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO14G02920.1.cds7	NO14G02920.1.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr14:864206..867611+
coding sequence from alignment at chr14:864206..867611+

mRNA sequence

>NO14G02920.1 ID=NO14G02920.1|Name=NO14G02920.1|organism=Nannochloropsis oceanica|type=mRNA|length=2259bp
CTTAGGATGGGCCTTTTACTTATTTTTATTTGCGTTTGCTCTTAATCCTC
GAAAGGGTTGGCTGCCATCGACATTTATCGCAAACTCCGGACCATGTATG
GGGCTCGGGAGTCCTGCCTGAGCAAAGCTTGGACAGGTCCTCCCTCGAAA
ACATCCTCGCCCTTCTCCTCCAGCAGCCTTTCCATCAACTCTTTATTTCG
CACTTTCATAATATCCTCAAGCCTGAACACCTGAATAACTGTCGGGTAGT
AAATGATTGACCAGGATTCCCTTTCAGGCATGAGGCCTCTCTCACTATCA
GCACTCATCTGCTGCTGCAGGTGCGCCTTTTTCATGCACATGAATTTCAT
ACTCCCTTCCCCTGCCGCCCCCGCCCGCACAATACTCCCCACTTCTGTTC
CCTGGCATGGCTGGTATCGACACTTGAGGCTCGTATGCCGGCTGGTGGGT
TCACATTTCTCATTAATATCACATTGTGCATTGCGATCACTCCAGAACTC
CTGAGGCAAGATTCAGCAAAAAATCGGGATAAAAGATTTACGGTAGCTCT
AAAAATAAAGCGCACAAATAACTCACGCACAAGCCTGTCTTAGTAAAGTC
CCACTGTAACATCGGGGCTGCGTAGAGCCCAAGGCCCTTTTTTGTAAAGC
CAGCAACTCATAACGGCTTTTCAGCTTGTCCGGGGTCCGGGGAACAATCG
AAGTCTGAGAGCCTTTTTGTTGCTTGGCCATGTGGAAGCACAAGCATGTG
CCCCCAACTGTAATCTGCCCGCGCTGGTCTGCAACAGAGAGAACTGGCCT
TGGCACCACGCTGGGACAATGGGGTTCGCAGTGTCCTTGAAGTAGCCCAA
CTATGATGTGCGTCATTTTGGAGCTGAGATGAGCGTGTGCTGGCTTCTAG
GCCTTTTGTCACACTTACCCCATCCCCTCTATGACCCCTTTATCCCCAAT
CACAGACACATACCACCTCTGAGTGGCAAGGATGGCACCCATCACTGTCC
ACGTCAAGTGCGCCAACGCCAAGAAGTACACGGTCACGGTGGAAAGTGAT
CTCAAGGTCCCCGACCTGAAGGCGGCCATCGAAACGGCCTCGGAAATCCC
CGCCGTGCAACAACGCCTCATCCACAAGGGTAAGGTCCTCAAGGACGAGG
AAGCCCTCTCTTCCTACTCCATCGAGGACGAGTCAACAGTCCACCTCGTC
CGGGCCTCTTCTTCTACCCCATCCTCTGCCTCTCCCTCCCCCTCTTTGGC
AGCTGCAGCCGCTGCTTCTTCCGCCCCCACTGCCACCAACATTCCTACTG
CCACCCCTGTCTATACACCGACTCCCGGCAACCCCTTTGCCGCCATGATG
GGAGGAATGATGGGGGGTATGCCAGGACAGCCGCAGCCGCAGCAGCCGCC
GCAGCAGCCGCCGTTTCAAGCGGGTCCGAACCCCCTGTTCGGAGGCTTCC
CGGGGATGGGGGGGGTGGGGGGGATGGGTGCTGGCTTTCCGACGCCTCAG
CAACAGCAGCAGATGCAGCAGCAGTTGATGCAGAACCCTGAGATGATGGA
CCAGATGATGCAGTCGCCGTTGATGCAACAAATGATGAGCTCGCCTGAAC
TCATGCGCAGCCTTATGATGGCCAATCCTCAGATGCGCGCCCTCCTCGAC
GCCAACCCTCAACTGAACCACATCCTCAGCGACCCGGCGATGCTTCGTCA
GGCCATGGAAACTGCCCGCAATCCCGCCGCACGCGAACAAATGATGCGGA
GCAACGACCTGGCCATGTCCCAGATCGAGAACCATCCCGAGGGTTTCAAT
GCCCTAAGGCGGATGTATCACGAGATCCAAGAGCCCATGATGGACGCCAT
AGGGAACAGCGGTGCAACCGACGCCAGCAGCAGCAGCAGCAGCAGCAGTG
GCACGACAAACAGCACTATCTCCGGCTCTCGTCCCAACACGAACGCCCTT
CCCAACCCCTGGGCCTCGGCCGCCTCCGCCTCCTCCTCCGCCCCTCCCTC
CCTCCCGCCTCCCTCGGGAGGCGCAGCGCCCGTGCCGTTTCTTCCCATGT
TTCCTCCGCAGCAGCAGCCGGGACAGCAGCAGCAGCAGCAGCCGGGTGGG
CAGGCGCCCTTAGCGAACCCATTCGCGGCGATGATGGGCGGAGGGATGGG
CGGAGGGATGGGCGGAGGGATGGGCGGAGGGATGGGCGGAGGACCGGGGG
CGATGCCGGGTATGCCAGGCGCCCCCCCCCCGACATGGAGCAAGTCCTAC
AGACGATGA

protein sequence of NO14G02920.1

>NO14G02920.1-protein ID=NO14G02920.1-protein|Name=NO14G02920.1|organism=Nannochloropsis oceanica|type=polypeptide|length=426bp
MAPITVHVKCANAKKYTVTVESDLKVPDLKAAIETASEIPAVQQRLIHKG
KVLKDEEALSSYSIEDESTVHLVRASSSTPSSASPSPSLAAAAAASSAPT
ATNIPTATPVYTPTPGNPFAAMMGGMMGGMPGQPQPQQPPQQPPFQAGPN
PLFGGFPGMGGVGGMGAGFPTPQQQQQMQQQLMQNPEMMDQMMQSPLMQQ
MMSSPELMRSLMMANPQMRALLDANPQLNHILSDPAMLRQAMETARNPAA
REQMMRSNDLAMSQIENHPEGFNALRRMYHEIQEPMMDAIGNSGATDASS
SSSSSSGTTNSTISGSRPNTNALPNPWASAASASSSAPPSLPPPSGGAAP
VPFLPMFPPQQQPGQQQQQQPGGQAPLANPFAAMMGGGMGGGMGGGMGGG
MGGGPGAMPGMPGAPPPTWSKSYRR*

mRNA from alignment at chr14:864206..867611+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO14G02920.1 ID=NO14G02920.1|Name=NO14G02920.1|organism=Nannochloropsis oceanica|type=mRNA|length=3406bp|location=Sequence derived from alignment at chr14:864206..867611+ (Nannochloropsis oceanica)
CTTAGGATGGGCCTTTTACTTATTTTTATTTGCGTTTGCTCTTAATCCTC
GAAAGGGTTGGCTGCCATCGACATTTATCGCAAACTCCGGACCATGTATG
GGGCTCGGGAGTCCTGCCTGAGCAAAGCTTGGACAGGTCCTCCCTCGAAA
ACATCCTCGCCCTTCTCCTCCAGCAGCCTTTCCATCAACTCTTTATTTCG
CACTTTCATAATATCCTCAAGCCTGAACACCTGAATAACTGTCGGGTAGT
AAATGATTGACCAGGATTCCCTTTCAGGCATGAGGCCTCTCTCACTATCA
GCACTCATCTGCTGCTGCAGGTGCGCCTTTTTCATGCACATGAATTTCAT
ACTCCCTTCCCCTGCCGCCCCCGCCCGCACAATACTCCCCACTTCTGTTC
CCTGGCATGGCTGGTATCGACACTTGAGGCTCGTATGCCGGCTGGTGGGT
TCACATTTCTCATTAATATCACATTGTGCATTGCGATCACTCCAGAACTC
CTGAGGCAAGATTCAGCAAAAAATCGGGATAAAAGATTTACGGTAGCTCT
AAAAATAAAGCGCACAAATAACTCACGCACAAGCCTGTCTTAGTAAAGTC
CCACTGTAACATCGGGGCTGCGTAGAGCCCAAGGCCCTTTTTTGTAAAGC
CAGCAACTCATAACGGCTTTTCAGCTTGTCCGGGGTCCGGGGAACAATCG
AAGTCTGAGAGCCTTTTTGTTGCTTGGCCATGTGGAAGCACAAGCATGTG
CCCCCAACTGTAATCTGCCCGCGCTGGTCTGCAACAGAGAGAACTGGCCT
TGGCACCACGCTGGGACAATGGGGTTCGCAGTGTCCTTGAAGTAGCCCAA
CTATGATGTGCGTCATTTTGGAGCTGAGATGAGCGTGTGCTGGCTTCTAG
GCCTTTTGTCACACTTACCCCATCCCCTCTATGACCCCTTTATCCCCAAT
CACAGACACATACCACCTCTGAGTGGCAAGGATGGCACCCATCACTGTCC
ACGTCAAGTGCGCCAACGCCAAGAAGTACACGGTCACGGTGGAAAGTGAT
CTCAAGGTCCCCGACCTGAAGGTAAGAGGAAGGGGAGGGAGGAGGGAGAG
AGACGTGTGTAAATGCGTGAGGGCAAGAGCACAGTTTGGCTTCTCATGAA
GTATAAGATATCACTTTTGAGCTATAGGTTTGCGAATGTGAGTGCAAGAA
AGAGACGGAAGGGGGAAGAGGGATTGGAGAGTGGAGTGACCCCGGCACAA
CGCAATAGCACGAAGCTGCACTAGGTAGAGATTAGAGATGTCTGGGTCAT
TCCTTCCAACGCATGCATTTATATACCTGCATGTCAAGGCGGTCTCACCA
CTGAAAGACTGAAAGACCGAAAAGGGGACCCGTACACTCACACACCCCTC
CTCCCCTCCCACCACGTCGTCCTCGCCTCCTACAGGCGGCCATCGAAACG
GCCTCGGAAATCCCCGCCGTGCAACAACGCCTCATCCACAAGGGTAAGGT
CCTCAAGGACGAGGAAGCCCTCTCTTCCTACTCCATCGAGGACGAGTCAA
CAGTCCACCTCGTCCGGGCCTCTTCTTCTACCCCATCCTCTGCCTCTCCC
TCCCCCTCTTTGGCAGCTGCAGCCGCTGCTTCTTCCGCCCCCACTGCCAC
CAACATTCCTACTGCCACCCCTGTCTATACACCGACTCCCGGCAACCCCT
TTGCCGCCATGATGGGAGGAATGATGGGGGGTATGCCAGGACAGCCGCAG
CCGCAGCAGCCGCCGCAGCAGCCGCCGTTTCAAGCGGGTCCGAACCCCCT
GTTCGGAGGCTTCCCGGGGATGGGGGGGGTGGGGGGGATGGGTGCTGGCT
TTCCGACGCCTCAGCAACAGCAGCAGATGCAGCAGCAGTTGATGCAGGTG
AGGACAAGGAGGGAGGGAAGGAGGGACCGAAGGAAGGAGGGCTGGGGGGG
GCGTTGTCAAAAGCAGTCCGTGCTCACATTGTCCCTCCCTCCCTCCCTTC
CGTCCTCCCTCCCTCCCACATCCTTCTAGAACCCTGAGATGATGGACCAG
ATGATGCAGTCGCCGTTGATGCAACAAATGATGAGCTCGCCTGAACTCAT
GCGCAGCCTTATGATGGCCAATCCTCAGGTATGCACGCCCCCCTCCCTCC
CCCCCTCCCTCCCCCCTCCCTCCTTGCTTCGTCTCGTTTTGATGTTTGCT
CACATCGGGATAGGCAACATTCAGAAAGGGCTCCTCCTTTCTCCTTCCTG
TCCTTCTCTGCCTCTTTCCTCATCACCGTACTCTACCCTCCTCCCTTTCC
TCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCAGATGCGCGCCCTCCT
CGACGCCAACCCTCAACTGAACCACATCCTCAGCGACCCGGCGATGCTTC
GTCAGGCCATGGAAACTGCCCGCAATCCCGCCGCACGCGAACAAATGATG
CGGAGCAACGTACGTGTGCCCCCCTCCCCCCTTCCTTTCCTCTTTCCCTC
CCTCCTTCCCCCCCATAGATCCTCCCATTTCTTCCCCTTCTTGACCGTGT
GACGATGCCTCTTAAAATGACGTCCACCTGTCCACGCCAATTACAATTGT
ATGCCCGATTTTTCCAACCCTCCCTCCTTCCCTCCCTCCCTCCCTCCCTC
TCCACCCCAGGACCTGGCCATGTCCCAGATCGAGAACCATCCCGAGGGTT
TCAATGCCCTAAGGCGGATGTATCACGAGATCCAAGAGCCCATGATGGAC
GCCATAGGGAACAGGTAGGGAGGAGGAAGGGAAGGAAGGGGAGGAGTAGA
AAGACTTTGCGAGTTCCAGGGCTCACGCAGATACACATACACACACACCT
CCTCTCCCAGCGGTGCAACCGACGCCAGCAGCAGCAGCAGCAGCAGCAGT
GGCACGACAAACAGCACTATCTCCGGCTCTCGTCCCAACACGAACGCCCT
TCCCAACCCCTGGGCCTCGGCCGCCTCCGCCTCCTCCTCCGCCCCTCCCT
CCCTCCCGCCTCCCTCGGGAGGCGCAGCGCCCGTGCCGTTTCTTCCCATG
TTTCCTCCGCAGCAGCAGCCGGGACAGCAGCAGCAGCAGCAGCCGGGTGG
GCAGGCGCCCTTAGCGAACCCATTCGCGGCGATGATGGGCGGAGGGATGG
GCGGAGGGATGGGCGGAGGGATGGGCGGAGGGATGGGCGGAGGACCGGGG
GCGATGCCGGGTATGCCAGGTAACTAGGGAGGGAGGGAGGGAGGGAGGGA
GGGAGGGGGGGAGGGAGGGAAAGAGGGAGGAAAACAGTACCGGGATAGAA
TGAATCACCATCAGCTTATCTTTCCTCCTCCCTTCCCTCCTTCCCTCCCT
CTCTCTCTTCCTCAGGCGCCCCCCCCCCGACATGGAGCAAGTCCTACAGA
CGATGA

Coding sequence (CDS) from alignment at chr14:864206..867611+

>NO14G02920.1 ID=NO14G02920.1|Name=NO14G02920.1|organism=Nannochloropsis oceanica|type=CDS|length=1278bp|location=Sequence derived from alignment at chr14:864206..867611+ (Nannochloropsis oceanica)
ATGGCACCCATCACTGTCCACGTCAAGTGCGCCAACGCCAAGAAGTACAC
GGTCACGGTGGAAAGTGATCTCAAGGTCCCCGACCTGAAGGCGGCCATCG
AAACGGCCTCGGAAATCCCCGCCGTGCAACAACGCCTCATCCACAAGGGT
AAGGTCCTCAAGGACGAGGAAGCCCTCTCTTCCTACTCCATCGAGGACGA
GTCAACAGTCCACCTCGTCCGGGCCTCTTCTTCTACCCCATCCTCTGCCT
CTCCCTCCCCCTCTTTGGCAGCTGCAGCCGCTGCTTCTTCCGCCCCCACT
GCCACCAACATTCCTACTGCCACCCCTGTCTATACACCGACTCCCGGCAA
CCCCTTTGCCGCCATGATGGGAGGAATGATGGGGGGTATGCCAGGACAGC
CGCAGCCGCAGCAGCCGCCGCAGCAGCCGCCGTTTCAAGCGGGTCCGAAC
CCCCTGTTCGGAGGCTTCCCGGGGATGGGGGGGGTGGGGGGGATGGGTGC
TGGCTTTCCGACGCCTCAGCAACAGCAGCAGATGCAGCAGCAGTTGATGC
AGAACCCTGAGATGATGGACCAGATGATGCAGTCGCCGTTGATGCAACAA
ATGATGAGCTCGCCTGAACTCATGCGCAGCCTTATGATGGCCAATCCTCA
GATGCGCGCCCTCCTCGACGCCAACCCTCAACTGAACCACATCCTCAGCG
ACCCGGCGATGCTTCGTCAGGCCATGGAAACTGCCCGCAATCCCGCCGCA
CGCGAACAAATGATGCGGAGCAACGACCTGGCCATGTCCCAGATCGAGAA
CCATCCCGAGGGTTTCAATGCCCTAAGGCGGATGTATCACGAGATCCAAG
AGCCCATGATGGACGCCATAGGGAACAGCGGTGCAACCGACGCCAGCAGC
AGCAGCAGCAGCAGCAGTGGCACGACAAACAGCACTATCTCCGGCTCTCG
TCCCAACACGAACGCCCTTCCCAACCCCTGGGCCTCGGCCGCCTCCGCCT
CCTCCTCCGCCCCTCCCTCCCTCCCGCCTCCCTCGGGAGGCGCAGCGCCC
GTGCCGTTTCTTCCCATGTTTCCTCCGCAGCAGCAGCCGGGACAGCAGCA
GCAGCAGCAGCCGGGTGGGCAGGCGCCCTTAGCGAACCCATTCGCGGCGA
TGATGGGCGGAGGGATGGGCGGAGGGATGGGCGGAGGGATGGGCGGAGGG
ATGGGCGGAGGACCGGGGGCGATGCCGGGTATGCCAGGCGCCCCCCCCCC
GACATGGAGCAAGTCCTACAGACGATGA

Synonyms

Publications