NO14G00350, NO14G00350 (gene) Nannochloropsis oceanica

Overview
NameNO14G00350
Unique NameNO14G00350
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3738
Alignment locationchr14:147724..151461 +

Link to JBrowse

Properties
Property NameValue
DescriptionHoming endonuclease rb16 2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:147724..151461 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003700DNA-binding transcription factor activity
GO:0004518nuclease activity
GO:0003700DNA-binding transcription factor activity
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO:0009058biosynthetic process
Vocabulary: INTERPRO
TermDefinition
IPR016177DNA-bd_dom
IPR001471AP2/ERF_dom
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Homology
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BLAST of NO14G00350 vs. NCBI_GenBank
Match: XP_005853499.1 (homing endonuclease rb16 2, partial [Nannochloropsis gaditana CCMP526] >EKU22862.1 homing endonuclease rb16 2, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 223.4 bits (568), Expect = 1.800e-54
Identity = 103/123 (83.74%), Postives = 109/123 (88.62%), Query Frame = 0 
Query:    2 MDHLQQTKITSDYRGIRWHKCNRKWEVQIKYRGKKLSLGYFDDELQAAQCYDRRARELYETPLLNFLVGGKLNPDRKRRVDPRSLRPRRIPPPWCADKFDPLPPGPVDAEGNPLQIEIPRSRG 125
            MDHL Q K+TSDYRGIRWHKCNRKWEVQIKYRGKKLSLGYFDDEL AAQCYDRRA+ELYETPLLNFL GGKLNP+RKRRVDPRSLRPRRIPPPWCADKF PLPP   D+E   L++ IPR  G
Sbjct:    1 MDHLHQGKVTSDYRGIRWHKCNRKWEVQIKYRGKKLSLGYFDDELVAAQCYDRRAKELYETPLLNFLPGGKLNPERKRRVDPRSLRPRRIPPPWCADKFVPLPPESADSEAPRLRVLIPREGG 123
[Close]
BLAST of NO14G00350 vs. NCBI_GenBank
Match: EWM24765.1 (homing endonuclease rb16 2, partial [Nannochloropsis gaditana])

HSP 1 Score: 223.4 bits (568), Expect = 1.800e-54
Identity = 103/123 (83.74%), Postives = 109/123 (88.62%), Query Frame = 0 
Query:    2 MDHLQQTKITSDYRGIRWHKCNRKWEVQIKYRGKKLSLGYFDDELQAAQCYDRRARELYETPLLNFLVGGKLNPDRKRRVDPRSLRPRRIPPPWCADKFDPLPPGPVDAEGNPLQIEIPRSRG 125
            MDHL Q K+TSDYRGIRWHKCNRKWEVQIKYRGKKLSLGYFDDEL AAQCYDRRA+ELYETPLLNFL GGKLNP+RKRRVDPRSLRPRRIPPPWCADKF PLPP   D+E   L++ IPR  G
Sbjct:    1 MDHLHQGKVTSDYRGIRWHKCNRKWEVQIKYRGKKLSLGYFDDELVAAQCYDRRAKELYETPLLNFLPGGKLNPERKRRVDPRSLRPRRIPPPWCADKFVPLPPESADSEAPRLRVLIPREGG 123
[Close]
BLAST of NO14G00350 vs. NCBI_GenBank
Match: XP_005854643.1 (homing endonuclease rb16 2, partial [Nannochloropsis gaditana CCMP526] >EKU21719.1 homing endonuclease rb16 2, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 199.5 bits (506), Expect = 2.800e-47
Identity = 90/97 (92.78%), Postives = 93/97 (95.88%), Query Frame = 0 
Query:    2 MDHLQQTKITSDYRGIRWHKCNRKWEVQIKYRGKKLSLGYFDDELQAAQCYDRRARELYETPLLNFLVGGKLNPDRKRRVDPRSLRPRRIPPPWCAD 99
            MDHL Q K+TSDYRGIRWHKCNRKWEVQIKYRGKKLSLGYFDDEL AAQCYDRRA+ELYETPLLNFL GGKLNP+RKRRVDPRSLRPRRIPPPWCAD
Sbjct:    1 MDHLHQGKVTSDYRGIRWHKCNRKWEVQIKYRGKKLSLGYFDDELVAAQCYDRRAKELYETPLLNFLPGGKLNPERKRRVDPRSLRPRRIPPPWCAD 97
The following BLAST results are available for this feature:
BLAST of NO14G00350 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
XP_005853499.11.800e-5483.74homing endonuclease rb16 2, partial [Nannochlorops... [more]
EWM24765.11.800e-5483.74homing endonuclease rb16 2, partial [Nannochlorops... [more]
XP_005854643.12.800e-4792.78homing endonuclease rb16 2, partial [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL138nonsL138Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR069ncniR069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR023ngnoR023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO14G00350.1NO14G00350.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|31963gene_5601Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100612g6gene5721Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO14G00350.1NO14G00350.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO14G00350 ID=NO14G00350|Name=NO14G00350|organism=Nannochloropsis oceanica|type=gene|length=3738bp
CCTTTCCCTACCCTTCCTTTCCCTTTACTGCTTACAGGTATGCACTCCAA
GAGTGCATCGAGACTTTCGCAATATTACGCACACATTAGAATGAAGAAAG
ACGAGGACAAGGACCGGGGGCTTCCCCTGTGAATTACGACTTCGAGGGAA
TGCCGAAGTGTGGACAGCAGCCGTTGCGTTTCTCCCCCTTTCTTGTATAA
TACATAGAAAGGGAAGATGAGACGGCGTGCATTTGCTCCCCCACAGGCTC
GATACAGTCGGTGAGCAAAAAATATGGCGAAGAAGTGAGGGGAGGTTATT
TTGTTCCCCCCCTCCTATAAACTAAAGAGTTAGAAAATGTTCACATTAAT
ATCTAACTTCTCATAAGATGTCTCCTGTTTCTTCATGGCTCATGATTTAA
TCCAGGCTAAGTATATATTTTGTTTACTTGACGGCTCGGTTAGTATCCTC
CTCTTCCTCTTTCCCTCGCTCAAACAAAAGAAAGAGATCTCAAATCAAGG
CTTGTGACATCTTCCTTGGTGCTGACAGGCTGCAAGTGATACAATCAGTG
TAAGACTATTAAAAGTGTCTTTAAGTATGAATATAAAGTGTGTGAAAGGG
ACTCCTTGAATGTGAAGAATACAGCGAAAGACAACGCCTGCGGAGCGAAC
GAGCCGAAGCTCGGGACCCAAGGAGCCCGCCTGGCACCCACAGGACACTC
TCGACCGAATGGAAAGGGAAAAAGAGGCAACCACTGTAGTCCATCTTCCT
GTCAGTCCCCACCAGCCACCCATCTTGCCCAGATATGCCTGCTTTATCCG
GCTCTGCATTGCGCTCTTGTGGTTTGGTCCGTGTGGAGAAAGAAACGAGC
GGGATTGGGGAGAGGAGGGAGGCATTCATGGGTCTCCCCCTCTTCTGTTG
TTTTCCCTCGCTCTTCTTTCTTTCATCGTGGGCGCAGTGTGTATGCGGTG
TCCCCCCACACCCCACCCCGATCCCCACACACCGCACACAAAGCTGTGTG
AGCTTCACAAAACAGGCTTATCCTCGTGGTGAGAGTGTGACAAGAGAGCA
TGGTGGTTGCATGGTCAACAGCGACGCGGGCGAAGGAGGAGTGAGGAGGT
CTGAAAACCTCCCTCCTAGTAGTGTCCTCCCCTTCCCCCGCGCGGTGCCG
CGCCCCCTCACCAACTTCTCACGCCCCACTACATGTACAGACCACACAGA
TAACCATCCGCACGTGCACGTGCCCCTGCCACCGCCCTTTTGTGCGTGGC
TCGCCGGGCGTCTTTCCCCCCATCTTTTCTCCCGCCGGCCTCGTGCCACC
CCTGTCAGCGCAAGCGCAAGGGCCACGCCAGACACTTAAAGAGGGTATGA
TGGATCACCTACAGCAAACTAAGATCACCTCCGACTACCGCGgtaagccc
tgtgtgtgtttatgcgtcctttctccccaatatgtcctcctggcttttgt
gaggcgcgtcctctccgtctactttttcaaattttgtctcccaacctgtg
agaatgtgtcggagagaaagacagattccccccaaagggacacacagggt
gcttcccccgctcgcccatcatgagtctctcaaccctgacaggacgctca
ggcccgtgtacacacaaaatcactcctggcaggcatccacacactgaaat
gcaccgaaaaatggacaacatgacccttccctgtttcaaaacttttctca
cccctccctccctctctcccgtgttacccagGGATCCGCTGGCACAAGTG
CAACCGAAAGTGGGAGGTCCAGATAAAGTACCGCGGGAAGAAGCTGTCAC
TTGGCTATTTCGACGATGAGTTGCAGGCGGCGCAGTGCTACGACCGCCGG
GCAAGGGAACTGTACGAGACGCCTCTACTCAATTTTCTTGTGGGAGGCAA
GCTCAACCCGGACCGAAAGCGACGTGTGGACCCGCGCAGCCTCAGgtagg
tgtaggtggaggggtaaaagggagggtaggagagagggaggggggcggcg
ctagtgctacgacagaggggctatagtgagaaagtcatcttctgaattga
tggctgagcccgggccggttgtgatgccgaaggcatccctttatccctcc
actcctccctccatcatgctccacataccttctctcatgcttggtgcatg
gctggccttgaacaatttcgtcattcaaacactcacccgttcgcttcctt
ccctccctccttccctcccatcctccttccctccctccagGCCACGCCGC
ATTCCCCCTCCCTGGTGTGCTGATAAATTTGATCCTCTCCCTCCCGGGCC
TGTAGACGCTGAGGGAAACCCCTTGCAGATCGAAATTCCGCGAAGTCGGG
GGGGAGCTCGAGGGGGAGGACGGGGGGGAGGACGGGGAGGAGGAGCGGGG
AGGGGGCGGAAGAGGAGGAGCCCAAGCCCGAGTCCAAGTCGATACCCGGA
AAAATTTTACAGCGACGACGATGACGAGGCGGGAGAGGAAGACGTTATCC
TCTCCGAGGATGAAGGGGAGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGGAGCGCGGAGAAGGGTTTGTTGCAACTGCGGGTGAAGGTGCGGAG
GGAGGGAGGAGGGGGAGCAGGAGGGAAGCCCCCTCTCCACTCTCCTCGCC
TCCCTCCCGGCCCTCCCCCTCCTGTGGCCGAGCCTCCTGAGCACCAACCG
TGGGACGGACCTTCCCTCCCTCCCCCCCCTCCTTCTATCGAGCCCCTCTC
TTCCTCCTCCCTCAAGGATGGTAGCCTCGCCGCCGCCGCAGCAGCAGCTG
CTGCTGCTGCTGCCGCCGCTGCGGGGGCCGGAGACCGCAAAAGGAAGAAA
ATCCAACACAACAAGCAATCCCAACAGGCTGCGCAGACCACGGGCGGGGA
CGGGACAGGCGCCTCCCCACCCTCGTCCTCGTCCTCCCCCTCCTCGCCGG
TCACCAGCTGGCCCGCCCCTCCTCCCCCCGGCCACGCTGCTGCTGGTGCT
GCTGCTGGTGCTGCTGCTGCTGTGACAGGTGCCCCCCTTCCCCCCCCTCC
AGAGGCTGGCGGTCGGCAGTGGACGCCTCAAGAGATTCACTCCTACTACT
ATCCTCAGTGGCACAACCATCCTCCCTCCCACCCTCCCTCCTCCCAAGCT
CCTGCCGCCGGCGCCGCGCAGCAGCAGCAGCAGGGAAATGGCCCTGCTTA
TCCTTTTCCTCACCCTCACTCGCTCCATCACCCCTCCCCCTACCATCCTT
ACGGCTTTCCTCCCCCTCCCCATGGCGCCTACCCCCCCTCCCTCCATCCC
GCCTTCCCCCCTCCCAATCACCAATACCCGCACGCGCCTCCCCCTCCTCC
CTTTGCCTCTGCCTACGTCCCTCCTCCTCCGCCTTCCTCCGTCCCGGCCT
CGGACAGCACCACGGGCGAACCTCCTTCCTCCCTCCCTGCCTCCTCCTCC
TCCTCCTCTGCCGGCAACACCACCATGGCCAGCAGCGCCAGCAGCACCAG
CAGCAGCAACAGCCCTTCCCCCTCCCTCACAGCCGCCACCGCCACAGGAG
CTGCCCCTCCCTCCCTCCCGTCCTCCTCCTCCTCCTCTGCGCAACAACAC
GACACCGCCACTGCCATCGGCGTCATGCCCCTCCCCCCCCCTCCTCCTCC
GAGGGCGGGATGGAGGAAGGGCACCCGTCCTCTACCTATGCGGGTGTGCA
CTGGGACGGAGGGAAAAAGGCTTGGAGCGCTTGGCTGA
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protein sequence of NO14G00350.1

>NO14G00350.1-protein ID=NO14G00350.1-protein|Name=NO14G00350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=586bp
MMDHLQQTKITSDYRGIRWHKCNRKWEVQIKYRGKKLSLGYFDDELQAAQ
CYDRRARELYETPLLNFLVGGKLNPDRKRRVDPRSLRPRRIPPPWCADKF
DPLPPGPVDAEGNPLQIEIPRSRGGARGGGRGGGRGGGAGRGRKRRSPSP
SPSRYPEKFYSDDDDEAGEEDVILSEDEGEGGGGGGGGGGGGSAEKGLLQ
LRVKVRREGGGGAGGKPPLHSPRLPPGPPPPVAEPPEHQPWDGPSLPPPP
PSIEPLSSSSLKDGSLAAAAAAAAAAAAAAAGAGDRKRKKIQHNKQSQQA
AQTTGGDGTGASPPSSSSSPSSPVTSWPAPPPPGHAAAGAAAGAAAAVTG
APLPPPPEAGGRQWTPQEIHSYYYPQWHNHPPSHPPSSQAPAAGAAQQQQ
QGNGPAYPFPHPHSLHHPSPYHPYGFPPPPHGAYPPSLHPAFPPPNHQYP
HAPPPPPFASAYVPPPPPSSVPASDSTTGEPPSSLPASSSSSSAGNTTMA
SSASSTSSSNSPSPSLTAATATGAAPPSLPSSSSSSAQQHDTATAIGVMP
LPPPPPPRAGWRKGTRPLPMRVCTGTEGKRLGALG*
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Synonyms
Publications