NO13G00180, NO13G00180 (gene) Nannochloropsis oceanica

Overview
NameNO13G00180
Unique NameNO13G00180
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1793
Alignment locationchr13:75392..77184 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:75392..77184 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO13G00180 vs. NCBI_GenBank
Match: XP_005854477.1 (hypothetical protein NGA_0194900 [Nannochloropsis gaditana CCMP526] >EKU21885.1 hypothetical protein NGA_0194900 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 183.3 bits (464), Expect = 1.200e-42
Identity = 116/251 (46.22%), Postives = 130/251 (51.79%), Query Frame = 0 
Query:  108 ARIVGVGREGRPVRRGKNVVLEWLRDVYHRIFWFGLDELDDEDEDYYLDEIDWLGEWNKPQD----------------------------------TYPQQFEKK---------XXXXXXXEAVLRRAGEREEPALWSNV-KGEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRVSREVWKRRIADVLRAGEGIDAGKLSKARVRLQEVNRALDRIGTERRELKILLGRE 315
            ARIVGVGREGRPVRR KNV LEWLRDVY RIFWFGL+ LDD    YYLDEIDWLGEWN+PQD                                  TYPQQF+ +                EA+LR+ GEREEPA+WSNV +G+K                                                L VSREVW+RRIADVLRAGEGID G+LSKAR RLQ V+R L++I  ERR L  L  RE
Sbjct:   96 ARIVGVGREGRPVRRNKNVFLEWLRDVYQRIFWFGLEGLDDXXXXYYLDEIDWLGEWNRPQDVGQGWRAAAEEDIERARTEGGGGVFRGAFPFDRQTYPQQFDAERRGKREGGGKGERDGREAILRKTGEREEPAVWSNVGRGKK------------GRTGGGIGGRKGKVEEEREKESFASDMARLEEREESLMVSREVWRRRIADVLRAGEGIDTGRLSKARARLQMVDRELEQIDRERRALNGLQARE 334
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BLAST of NO13G00180 vs. NCBI_GenBank
Match: EWM22843.1 (hypothetical protein Naga_100293g4 [Nannochloropsis gaditana])

HSP 1 Score: 94.7 bits (234), Expect = 5.700e-16
Identity = 43/52 (82.69%), Postives = 45/52 (86.54%), Query Frame = 0 
Query:  111 VGVGREGRPVRRGKNVVLEWLRDVYHRIFWFGLDELDDEDEDYYLDEIDWLG 163
            VGVGREGRPVRR KNV LEWLRDVY RIFWFGL+ LDD+   YYLDEIDWLG
Sbjct:   42 VGVGREGRPVRRNKNVFLEWLRDVYQRIFWFGLEGLDDDXXXYYLDEIDWLG 93
The following BLAST results are available for this feature:
BLAST of NO13G00180 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
XP_005854477.11.200e-4246.22hypothetical protein NGA_0194900 [Nannochloropsis ... [more]
EWM22843.15.700e-1682.69hypothetical protein Naga_100293g4 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL132nonsL132Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR026ncniR026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR057ngnoR057Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR056ngnoR056Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001908NSK001908Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G00180.1NO13G00180.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|119238gene_6995Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100293g4gene7604Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G00180.1NO13G00180.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G00180 ID=NO13G00180|Name=NO13G00180|organism=Nannochloropsis oceanica|type=gene|length=1793bp
ATGCCACGAGGCAGCACCGTACCATCCCTCTCCTCCTCCTCCTCCTCCTC
CTTTTCCGGCGTGTCGGTCCTGGGCCTGTTCGTTCTAAGTGTCACCCTTA
CGAGCATCGTTACACAAGCCTTTATCCTGCCCCTTCCTTCTTCCGCCCTC
CCTCGACGGGCGCCGGCAGGCACTTTTTCCGGTCTGACGCGCTCCGCCCG
CGGAAGCGGAAGCGGGGGCGGCAGTCCGGGACCACGTCCGTCCTTTCGAG
ACATCGAAGAGGAGGAATACGAGGGCGAGGAGGAGGAGGAGGAAAAGGAG
TATGACGACGACGATGAGGTCGCCCGGATgtacgttttgcgggtgtttct
cgtgaccagggaaggaggggcaagaggtcggggatgtgatgcttattttc
tccagaccattctctcactctcttgggcttgtctctcgttccacccacag
ccatcatcatcacaaacacatatgagagagggctctaataggatacactt
accccaggatgaccgtcgactcaactccccctccctctctctctcccttc
tttccttcctccctacccctccactctttcagCGTGGGCGTCGGTCGCGA
AGGCCGCCCCGTGCGCCGCGGGAAGAACGTGGTGTTGGAGTGGCTGCGTG
ACGTGTACCATCGGATCTTCTGGTTCGGCCTGGACGAGCTGGATGACGAG
GACGAGGACTACTACCTCGATGAGATCGACTGGCTCGgtacgtgcctttc
ctttctccccccttcctccctccctcccttgcttcctcacttgccctctc
tccctccctccctccctccctcctacccacagGCGAGTGGAACAAGCCGC
AAGATgtgttcaagggctggaaggagagggaggaggaggggggagggcgg
gcgggcagaagggcccatttcgaggagcctttccctttgatcgacagACA
TACCCTCAGCAGTTCGAGAAGAAGAAGGGAGGGGGGAAGGGCGGGGAGGC
GGTGTTGCGCAGGGCGGGCGAGAGGGAGGAGCCCGCGCTGTGGTCGAATG
TGAAGGGGGAGAAGAAGATGGGGAGGGAGGGAGGGAGGAAGGGAGGGAGG
GGGGGAGGGAGGAGATTAAGGAAGGAAGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAAGAGGAGAGTGTGGAGCTGTTGCTGGTGCGGCTGGAGGAGGAGG
AGGAGGCACTGCGGGTGTCGAGGGAGGTGTGGAAGCGGAGGATCGCGGAT
GTGCTGCGGGCGGGAGAAGgtagggaaggagggagggagggagggaggga
gggagggagggagggaggcagagtggacgggtttttaatgctttagtcgt
gggtgttgcatttctttcttttgttcgatcactcctttattgatttacgt
atacatacatacatatatacatacatgtatatacatacatgcatgttaat
tcatttacgtattcatagatttcttttaatacttttctatcttatcgatg
ctgcaagactccgtccagcacactatcacgtctagcactcttatagccct
ccctccctctctccctccctcctcccctccctctctccctctagGCATTG
ATGCAGGTAAACTGAGCAAGGCCCGTGTCCGTCTGCAGGAGGTTAATCGG
GCATTGGATCGGATCGGGACGGAGAGAAGAGAGCTGAAGATTTTGTTGGG
GAGGGAGGGAGGGAGGAAGGTGGAGGAGGAGGACGACGAGGACGACGACG
AGGAGGAGGATGCGCTTCGGATATAGGGGGAAGAGAGGGAGGG
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protein sequence of NO13G00180.1

>NO13G00180.1-protein ID=NO13G00180.1-protein|Name=NO13G00180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=337bp
MPRGSTVPSLSSSSSSSFSGVSVLGLFVLSVTLTSIVTQAFILPLPSSAL
PRRAPAGTFSGLTRSARGSGSGGGSPGPRPSFRDIEEEEYEGEEEEEEKE
YDDDDEVARIVGVGREGRPVRRGKNVVLEWLRDVYHRIFWFGLDELDDED
EDYYLDEIDWLGEWNKPQDTYPQQFEKKKGGGKGGEAVLRRAGEREEPAL
WSNVKGEKKMGREGGRKGGRGGGRRLRKEEEEEEEEEEEEESVELLLVRL
EEEEEALRVSREVWKRRIADVLRAGEGIDAGKLSKARVRLQEVNRALDRI
GTERRELKILLGREGGRKVEEEDDEDDDEEEDALRI*
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Synonyms
Publications