NO13G00180.1, NO13G00180.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G00180.1
Unique NameNO13G00180.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1028
Alignment locationchr13:75392..77184 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:75392..77184 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO13G00180.1 vs.
Match: XP_005854477.1 (hypothetical protein NGA_0194900 [Nannochloropsis gaditana CCMP526]; EKU21885.1 hypothetical protein NGA_0194900 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 140.2 bits (352), Expect = 1.200e-29
Identity = 98/172 (56.98%), Postives = 116/172 (67.44%), Query Frame = 0 
Query:  168 QDTYPQQFE-----KKKGGGKGG----EAVLRRAGEREEPALWSNVKGEKKMGREGGRKGGRGGGRRLRKEEEEEEEEEEEEESVELLLVRLEEEEEALRVSREVWKRRIADVLRAGEGIDAGKLSKARVRLQEVNRALDRIGTERRELKILLGREGGRKVEEEDDEDDDEE 331
            + TYPQQF+     K++GGGKG     EA+LR+ GEREEPA+WSNV G  K GR GG  GGR G          + EEE E+ES    + RLEE EE+L VSREVW+RRIADVLRAGEGID G+LSKAR RLQ V+R L++I  ERR L  L  RE GR  E   DE+D+EE
Sbjct:  190 RQTYPQQFDAERRGKREGGGKGERDGREAILRKTGEREEPAVWSNV-GRGKKGRTGGGIGGRKG----------KVEEEREKESFASDMARLEEREESLMVSREVWRRRIADVLRAGEGIDTGRLSKARARLQMVDRELEQIDRERRALNGLQARERGRMEEGWGDEEDEEE 350
The following BLAST results are available for this feature:
BLAST of NO13G00180.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854477.11.200e-2956.98hypothetical protein NGA_0194900 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G00180NO13G00180Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G00180.1NO13G00180.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G00180.1.cds1NO13G00180.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G00180.1.cds2NO13G00180.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G00180.1.cds3NO13G00180.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G00180.1.cds4NO13G00180.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G00180.1.cds5NO13G00180.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G00180.1 ID=NO13G00180.1|Name=NO13G00180.1|organism=Nannochloropsis oceanica|type=mRNA|length=1028bp
ATGCCACGAGGCAGCACCGTACCATCCCTCTCCTCCTCCTCCTCCTCCTC
CTTTTCCGGCGTGTCGGTCCTGGGCCTGTTCGTTCTAAGTGTCACCCTTA
CGAGCATCGTTACACAAGCCTTTATCCTGCCCCTTCCTTCTTCCGCCCTC
CCTCGACGGGCGCCGGCAGGCACTTTTTCCGGTCTGACGCGCTCCGCCCG
CGGAAGCGGAAGCGGGGGCGGCAGTCCGGGACCACGTCCGTCCTTTCGAG
ACATCGAAGAGGAGGAATACGAGGGCGAGGAGGAGGAGGAGGAAAAGGAG
TATGACGACGACGATGAGGTCGCCCGGATCGTGGGCGTCGGTCGCGAAGG
CCGCCCCGTGCGCCGCGGGAAGAACGTGGTGTTGGAGTGGCTGCGTGACG
TGTACCATCGGATCTTCTGGTTCGGCCTGGACGAGCTGGATGACGAGGAC
GAGGACTACTACCTCGATGAGATCGACTGGCTCGGCGAGTGGAACAAGCC
GCAAGATACATACCCTCAGCAGTTCGAGAAGAAGAAGGGAGGGGGGAAGG
GCGGGGAGGCGGTGTTGCGCAGGGCGGGCGAGAGGGAGGAGCCCGCGCTG
TGGTCGAATGTGAAGGGGGAGAAGAAGATGGGGAGGGAGGGAGGGAGGAA
GGGAGGGAGGGGGGGAGGGAGGAGATTAAGGAAGGAAGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAAGAGGAGAGTGTGGAGCTGTTGCTGGTGCGGCTG
GAGGAGGAGGAGGAGGCACTGCGGGTGTCGAGGGAGGTGTGGAAGCGGAG
GATCGCGGATGTGCTGCGGGCGGGAGAAGGCATTGATGCAGGTAAACTGA
GCAAGGCCCGTGTCCGTCTGCAGGAGGTTAATCGGGCATTGGATCGGATC
GGGACGGAGAGAAGAGAGCTGAAGATTTTGTTGGGGAGGGAGGGAGGGAG
GAAGGTGGAGGAGGAGGACGACGAGGACGACGACGAGGAGGAGGATGCGC
TTCGGATATAGGGGGAAGAGAGGGAGGG
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protein sequence of NO13G00180.1

>NO13G00180.1-protein ID=NO13G00180.1-protein|Name=NO13G00180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=337bp
MPRGSTVPSLSSSSSSSFSGVSVLGLFVLSVTLTSIVTQAFILPLPSSAL
PRRAPAGTFSGLTRSARGSGSGGGSPGPRPSFRDIEEEEYEGEEEEEEKE
YDDDDEVARIVGVGREGRPVRRGKNVVLEWLRDVYHRIFWFGLDELDDED
EDYYLDEIDWLGEWNKPQDTYPQQFEKKKGGGKGGEAVLRRAGEREEPAL
WSNVKGEKKMGREGGRKGGRGGGRRLRKEEEEEEEEEEEEESVELLLVRL
EEEEEALRVSREVWKRRIADVLRAGEGIDAGKLSKARVRLQEVNRALDRI
GTERRELKILLGREGGRKVEEEDDEDDDEEEDALRI*
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mRNA from alignment at chr13:75392..77184+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G00180.1 ID=NO13G00180.1|Name=NO13G00180.1|organism=Nannochloropsis oceanica|type=mRNA|length=1793bp|location=Sequence derived from alignment at chr13:75392..77184+ (Nannochloropsis oceanica)
ATGCCACGAGGCAGCACCGTACCATCCCTCTCCTCCTCCTCCTCCTCCTC
CTTTTCCGGCGTGTCGGTCCTGGGCCTGTTCGTTCTAAGTGTCACCCTTA
CGAGCATCGTTACACAAGCCTTTATCCTGCCCCTTCCTTCTTCCGCCCTC
CCTCGACGGGCGCCGGCAGGCACTTTTTCCGGTCTGACGCGCTCCGCCCG
CGGAAGCGGAAGCGGGGGCGGCAGTCCGGGACCACGTCCGTCCTTTCGAG
ACATCGAAGAGGAGGAATACGAGGGCGAGGAGGAGGAGGAGGAAAAGGAG
TATGACGACGACGATGAGGTCGCCCGGATGTACGTTTTGCGGGTGTTTCT
CGTGACCAGGGAAGGAGGGGCAAGAGGTCGGGGATGTGATGCTTATTTTC
TCCAGACCATTCTCTCACTCTCTTGGGCTTGTCTCTCGTTCCACCCACAG
CCATCATCATCACAAACACATATGAGAGAGGGCTCTAATAGGATACACTT
ACCCCAGGATGACCGTCGACTCAACTCCCCCTCCCTCTCTCTCTCCCTTC
TTTCCTTCCTCCCTACCCCTCCACTCTTTCAGCGTGGGCGTCGGTCGCGA
AGGCCGCCCCGTGCGCCGCGGGAAGAACGTGGTGTTGGAGTGGCTGCGTG
ACGTGTACCATCGGATCTTCTGGTTCGGCCTGGACGAGCTGGATGACGAG
GACGAGGACTACTACCTCGATGAGATCGACTGGCTCGGTACGTGCCTTTC
CTTTCTCCCCCCTTCCTCCCTCCCTCCCTTGCTTCCTCACTTGCCCTCTC
TCCCTCCCTCCCTCCCTCCCTCCTACCCACAGGCGAGTGGAACAAGCCGC
AAGATGTGTTCAAGGGCTGGAAGGAGAGGGAGGAGGAGGGGGGAGGGCGG
GCGGGCAGAAGGGCCCATTTCGAGGAGCCTTTCCCTTTGATCGACAGACA
TACCCTCAGCAGTTCGAGAAGAAGAAGGGAGGGGGGAAGGGCGGGGAGGC
GGTGTTGCGCAGGGCGGGCGAGAGGGAGGAGCCCGCGCTGTGGTCGAATG
TGAAGGGGGAGAAGAAGATGGGGAGGGAGGGAGGGAGGAAGGGAGGGAGG
GGGGGAGGGAGGAGATTAAGGAAGGAAGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAAGAGGAGAGTGTGGAGCTGTTGCTGGTGCGGCTGGAGGAGGAGG
AGGAGGCACTGCGGGTGTCGAGGGAGGTGTGGAAGCGGAGGATCGCGGAT
GTGCTGCGGGCGGGAGAAGGTAGGGAAGGAGGGAGGGAGGGAGGGAGGGA
GGGAGGGAGGGAGGGAGGCAGAGTGGACGGGTTTTTAATGCTTTAGTCGT
GGGTGTTGCATTTCTTTCTTTTGTTCGATCACTCCTTTATTGATTTACGT
ATACATACATACATATATACATACATGTATATACATACATGCATGTTAAT
TCATTTACGTATTCATAGATTTCTTTTAATACTTTTCTATCTTATCGATG
CTGCAAGACTCCGTCCAGCACACTATCACGTCTAGCACTCTTATAGCCCT
CCCTCCCTCTCTCCCTCCCTCCTCCCCTCCCTCTCTCCCTCTAGGCATTG
ATGCAGGTAAACTGAGCAAGGCCCGTGTCCGTCTGCAGGAGGTTAATCGG
GCATTGGATCGGATCGGGACGGAGAGAAGAGAGCTGAAGATTTTGTTGGG
GAGGGAGGGAGGGAGGAAGGTGGAGGAGGAGGACGACGAGGACGACGACG
AGGAGGAGGATGCGCTTCGGATATAGGGGGAAGAGAGGGAGGG
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Coding sequence (CDS) from alignment at chr13:75392..77184+

>NO13G00180.1 ID=NO13G00180.1|Name=NO13G00180.1|organism=Nannochloropsis oceanica|type=CDS|length=1011bp|location=Sequence derived from alignment at chr13:75392..77184+ (Nannochloropsis oceanica)
ATGCCACGAGGCAGCACCGTACCATCCCTCTCCTCCTCCTCCTCCTCCTC
CTTTTCCGGCGTGTCGGTCCTGGGCCTGTTCGTTCTAAGTGTCACCCTTA
CGAGCATCGTTACACAAGCCTTTATCCTGCCCCTTCCTTCTTCCGCCCTC
CCTCGACGGGCGCCGGCAGGCACTTTTTCCGGTCTGACGCGCTCCGCCCG
CGGAAGCGGAAGCGGGGGCGGCAGTCCGGGACCACGTCCGTCCTTTCGAG
ACATCGAAGAGGAGGAATACGAGGGCGAGGAGGAGGAGGAGGAAAAGGAG
TATGACGACGACGATGAGGTCGCCCGGATCGTGGGCGTCGGTCGCGAAGG
CCGCCCCGTGCGCCGCGGGAAGAACGTGGTGTTGGAGTGGCTGCGTGACG
TGTACCATCGGATCTTCTGGTTCGGCCTGGACGAGCTGGATGACGAGGAC
GAGGACTACTACCTCGATGAGATCGACTGGCTCGGCGAGTGGAACAAGCC
GCAAGATACATACCCTCAGCAGTTCGAGAAGAAGAAGGGAGGGGGGAAGG
GCGGGGAGGCGGTGTTGCGCAGGGCGGGCGAGAGGGAGGAGCCCGCGCTG
TGGTCGAATGTGAAGGGGGAGAAGAAGATGGGGAGGGAGGGAGGGAGGAA
GGGAGGGAGGGGGGGAGGGAGGAGATTAAGGAAGGAAGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAAGAGGAGAGTGTGGAGCTGTTGCTGGTGCGGCTG
GAGGAGGAGGAGGAGGCACTGCGGGTGTCGAGGGAGGTGTGGAAGCGGAG
GATCGCGGATGTGCTGCGGGCGGGAGAAGGCATTGATGCAGGTAAACTGA
GCAAGGCCCGTGTCCGTCTGCAGGAGGTTAATCGGGCATTGGATCGGATC
GGGACGGAGAGAAGAGAGCTGAAGATTTTGTTGGGGAGGGAGGGAGGGAG
GAAGGTGGAGGAGGAGGACGACGAGGACGACGACGAGGAGGAGGATGCGC
TTCGGATATAG
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Synonyms
Publications