NO12G03670, NO12G03670 (gene) Nannochloropsis oceanica

Overview
NameNO12G03670
Unique NameNO12G03670
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1017
Alignment locationchr12:1015039..1016055 -

Link to JBrowse

Properties
Property NameValue
DescriptionAnkyrin unc44
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:1015039..1016055 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036770Ankyrin_rpt-contain_sf
IPR020683Ankyrin_rpt-contain_dom
IPR002110Ankyrin_rpt
Homology
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BLAST of NO12G03670 vs. NCBI_GenBank
Match: XP_005853893.1 (ankyrin unc44, partial [Nannochloropsis gaditana CCMP526] >EKU22466.1 ankyrin unc44, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 128.3 bits (321), Expect = 4.000e-26
Identity = 56/73 (76.71%), Postives = 63/73 (86.30%), Query Frame = 0 
Query:   24 AGHWDHPIHKAALHNNLEAVESLLTLNPALLETPGFNGILPVQCAARRGHLELLRYFLSQGAQPCGRDRGHWS 97
            AGHWDHPIHKAALHNNLEA + L+TLNP+LLE  GFNGILP+ CAARRGH +LLR+FLSQGA P GRD G W+
Sbjct:    1 AGHWDHPIHKAALHNNLEAAKWLVTLNPSLLEASGFNGILPIHCAARRGHTDLLRFFLSQGATPKGRDSGGWT 73
The following BLAST results are available for this feature:
BLAST of NO12G03670 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853893.14.000e-2676.71ankyrin unc44, partial [Nannochloropsis gaditana C... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010344NSK010344Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G03670.1NO12G03670.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|631140gene_5545Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G03670.1NO12G03670.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G03670 ID=NO12G03670|Name=NO12G03670|organism=Nannochloropsis oceanica|type=gene|length=1017bp
ATGACGCCATTCGTCCGAACTAAATTAGCCCCGTCCCCTGCCTGCCCTAG
CATCACCGCCATCACCACGGCGGGGCACTGGGACCATCCGATTCATAAAG
CCGCCCTCCACAACAACTTGGAGGCGGTCGAAAGCCTGTTGACCCTTAAT
CCCGCCCTCTTGGAAACTCCCGGCTTCAATGGTATTTTGCCTGTTCAATG
TGCGGCGCGGCGAGGCCACCTCGAACTGCTCCGgtacgtttggttggctt
aaggggagcgagatgaggtcgaagtatgtgtctactgagatatgagacca
ataatttttaagatgtgcggtgacgttgacaatctctgatatcttccacc
tacctcaatcccactcagCTATTTCCTTTCTCAAGGTGCCCAACCCTGCG
GCCGAGATCGCGGACATTGGTCCTTGCTTCATCACGCCGCAGCGGGGGGG
CATGAAGCGTGCCTCCTCTTCCTCCTCACCACACCCCTCCTCCCCCAAGC
CCCTCATTTCTTGGAGATTGATTCCATGGCTCGCGACGGGAGCACGCCGT
TGCTGGTGGCGGTAACGGAGGGACAATCACCCGCGGTGGTGCGCTTACTC
TTGCGCGCAGGGGCGGACCCCACCAAGGCAAACGAGAAGGGAGAGAGTGC
TTACTCTTTCTTGAATGCACACATGCACAAGCATGCGAAAAAGATGGGAA
TGGTCATGGGCTCGTCGTCGCAGCAGCAGCAGCAGGAGCGGCCGATTCTG
CGCCTGAACAATAAGGGCCGAGCCTTATGTAAAATGGCAGGGATGGTGTT
AGCAGGGGGGTCAATGCAGCGGGCGATGGTCCTTCGCTTGCGCTGGAGAG
GGGAAGGAGGGAGGATGATTAATGTGGTGGACGAGGAGAAGGAGGAAGGG
AAAGAGGGAGGGGGGGAAGGAGGGAGGGAGAAGGGGGTAGTGCAGATGTT
GGTGGATGAGACTGGTGACGACGTATTTGGGGAGGTGATGCGCTACTTGG
ATACCACGTCGGGTTAA
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protein sequence of NO12G03670.1

>NO12G03670.1-protein ID=NO12G03670.1-protein|Name=NO12G03670.1|organism=Nannochloropsis oceanica|type=polypeptide|length=294bp
MTPFVRTKLAPSPACPSITAITTAGHWDHPIHKAALHNNLEAVESLLTLN
PALLETPGFNGILPVQCAARRGHLELLRYFLSQGAQPCGRDRGHWSLLHH
AAAGGHEACLLFLLTTPLLPQAPHFLEIDSMARDGSTPLLVAVTEGQSPA
VVRLLLRAGADPTKANEKGESAYSFLNAHMHKHAKKMGMVMGSSSQQQQQ
ERPILRLNNKGRALCKMAGMVLAGGSMQRAMVLRLRWRGEGGRMINVVDE
EKEEGKEGGGEGGREKGVVQMLVDETGDDVFGEVMRYLDTTSG*
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Synonyms
Publications