NO12G03670.1, NO12G03670.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G03670.1
Unique NameNO12G03670.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length882
Alignment locationchr12:1015039..1016055 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:1015039..1016055 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO12G03670.1 vs.
Match: XP_005853893.1 (ankyrin unc44, partial [Nannochloropsis gaditana CCMP526]; EKU22466.1 ankyrin unc44, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 127.9 bits (320), Expect = 5.300e-26
Identity = 56/73 (76.71%), Postives = 63/73 (86.30%), Query Frame = 0 
Query:   24 AGHWDHPIHKAALHNNLEAVESLLTLNPALLETPGFNGILPVQCAARRGHLELLRYFLSQGAQPCGRDRGHWS 97
            AGHWDHPIHKAALHNNLEA + L+TLNP+LLE  GFNGILP+ CAARRGH +LLR+FLSQGA P GRD G W+
Sbjct:    1 AGHWDHPIHKAALHNNLEAAKWLVTLNPSLLEASGFNGILPIHCAARRGHTDLLRFFLSQGATPKGRDSGGWT 73
The following BLAST results are available for this feature:
BLAST of NO12G03670.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853893.15.300e-2676.71ankyrin unc44, partial [Nannochloropsis gaditana C... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G03670NO12G03670Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G03670.1NO12G03670.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G03670.1.cds1NO12G03670.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G03670.1.cds2NO12G03670.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G03670.1 ID=NO12G03670.1|Name=NO12G03670.1|organism=Nannochloropsis oceanica|type=mRNA|length=882bp
ATGACGCCATTCGTCCGAACTAAATTAGCCCCGTCCCCTGCCTGCCCTAG
CATCACCGCCATCACCACGGCGGGGCACTGGGACCATCCGATTCATAAAG
CCGCCCTCCACAACAACTTGGAGGCGGTCGAAAGCCTGTTGACCCTTAAT
CCCGCCCTCTTGGAAACTCCCGGCTTCAATGGTATTTTGCCTGTTCAATG
TGCGGCGCGGCGAGGCCACCTCGAACTGCTCCGCTATTTCCTTTCTCAAG
GTGCCCAACCCTGCGGCCGAGATCGCGGACATTGGTCCTTGCTTCATCAC
GCCGCAGCGGGGGGGCATGAAGCGTGCCTCCTCTTCCTCCTCACCACACC
CCTCCTCCCCCAAGCCCCTCATTTCTTGGAGATTGATTCCATGGCTCGCG
ACGGGAGCACGCCGTTGCTGGTGGCGGTAACGGAGGGACAATCACCCGCG
GTGGTGCGCTTACTCTTGCGCGCAGGGGCGGACCCCACCAAGGCAAACGA
GAAGGGAGAGAGTGCTTACTCTTTCTTGAATGCACACATGCACAAGCATG
CGAAAAAGATGGGAATGGTCATGGGCTCGTCGTCGCAGCAGCAGCAGCAG
GAGCGGCCGATTCTGCGCCTGAACAATAAGGGCCGAGCCTTATGTAAAAT
GGCAGGGATGGTGTTAGCAGGGGGGTCAATGCAGCGGGCGATGGTCCTTC
GCTTGCGCTGGAGAGGGGAAGGAGGGAGGATGATTAATGTGGTGGACGAG
GAGAAGGAGGAAGGGAAAGAGGGAGGGGGGGAAGGAGGGAGGGAGAAGGG
GGTAGTGCAGATGTTGGTGGATGAGACTGGTGACGACGTATTTGGGGAGG
TGATGCGCTACTTGGATACCACGTCGGGTTAA
back to top

protein sequence of NO12G03670.1

>NO12G03670.1-protein ID=NO12G03670.1-protein|Name=NO12G03670.1|organism=Nannochloropsis oceanica|type=polypeptide|length=294bp
MTPFVRTKLAPSPACPSITAITTAGHWDHPIHKAALHNNLEAVESLLTLN
PALLETPGFNGILPVQCAARRGHLELLRYFLSQGAQPCGRDRGHWSLLHH
AAAGGHEACLLFLLTTPLLPQAPHFLEIDSMARDGSTPLLVAVTEGQSPA
VVRLLLRAGADPTKANEKGESAYSFLNAHMHKHAKKMGMVMGSSSQQQQQ
ERPILRLNNKGRALCKMAGMVLAGGSMQRAMVLRLRWRGEGGRMINVVDE
EKEEGKEGGGEGGREKGVVQMLVDETGDDVFGEVMRYLDTTSG*
back to top

mRNA from alignment at chr12:1015039..1016055-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G03670.1 ID=NO12G03670.1|Name=NO12G03670.1|organism=Nannochloropsis oceanica|type=mRNA|length=1017bp|location=Sequence derived from alignment at chr12:1015039..1016055- (Nannochloropsis oceanica)
ATGACGCCATTCGTCCGAACTAAATTAGCCCCGTCCCCTGCCTGCCCTAG
CATCACCGCCATCACCACGGCGGGGCACTGGGACCATCCGATTCATAAAG
CCGCCCTCCACAACAACTTGGAGGCGGTCGAAAGCCTGTTGACCCTTAAT
CCCGCCCTCTTGGAAACTCCCGGCTTCAATGGTATTTTGCCTGTTCAATG
TGCGGCGCGGCGAGGCCACCTCGAACTGCTCCGGTACGTTTGGTTGGCTT
AAGGGGAGCGAGATGAGGTCGAAGTATGTGTCTACTGAGATATGAGACCA
ATAATTTTTAAGATGTGCGGTGACGTTGACAATCTCTGATATCTTCCACC
TACCTCAATCCCACTCAGCTATTTCCTTTCTCAAGGTGCCCAACCCTGCG
GCCGAGATCGCGGACATTGGTCCTTGCTTCATCACGCCGCAGCGGGGGGG
CATGAAGCGTGCCTCCTCTTCCTCCTCACCACACCCCTCCTCCCCCAAGC
CCCTCATTTCTTGGAGATTGATTCCATGGCTCGCGACGGGAGCACGCCGT
TGCTGGTGGCGGTAACGGAGGGACAATCACCCGCGGTGGTGCGCTTACTC
TTGCGCGCAGGGGCGGACCCCACCAAGGCAAACGAGAAGGGAGAGAGTGC
TTACTCTTTCTTGAATGCACACATGCACAAGCATGCGAAAAAGATGGGAA
TGGTCATGGGCTCGTCGTCGCAGCAGCAGCAGCAGGAGCGGCCGATTCTG
CGCCTGAACAATAAGGGCCGAGCCTTATGTAAAATGGCAGGGATGGTGTT
AGCAGGGGGGTCAATGCAGCGGGCGATGGTCCTTCGCTTGCGCTGGAGAG
GGGAAGGAGGGAGGATGATTAATGTGGTGGACGAGGAGAAGGAGGAAGGG
AAAGAGGGAGGGGGGGAAGGAGGGAGGGAGAAGGGGGTAGTGCAGATGTT
GGTGGATGAGACTGGTGACGACGTATTTGGGGAGGTGATGCGCTACTTGG
ATACCACGTCGGGTTAA
back to top

Coding sequence (CDS) from alignment at chr12:1015039..1016055-

>NO12G03670.1 ID=NO12G03670.1|Name=NO12G03670.1|organism=Nannochloropsis oceanica|type=CDS|length=882bp|location=Sequence derived from alignment at chr12:1015039..1016055- (Nannochloropsis oceanica)
ATGACGCCATTCGTCCGAACTAAATTAGCCCCGTCCCCTGCCTGCCCTAG
CATCACCGCCATCACCACGGCGGGGCACTGGGACCATCCGATTCATAAAG
CCGCCCTCCACAACAACTTGGAGGCGGTCGAAAGCCTGTTGACCCTTAAT
CCCGCCCTCTTGGAAACTCCCGGCTTCAATGGTATTTTGCCTGTTCAATG
TGCGGCGCGGCGAGGCCACCTCGAACTGCTCCGCTATTTCCTTTCTCAAG
GTGCCCAACCCTGCGGCCGAGATCGCGGACATTGGTCCTTGCTTCATCAC
GCCGCAGCGGGGGGGCATGAAGCGTGCCTCCTCTTCCTCCTCACCACACC
CCTCCTCCCCCAAGCCCCTCATTTCTTGGAGATTGATTCCATGGCTCGCG
ACGGGAGCACGCCGTTGCTGGTGGCGGTAACGGAGGGACAATCACCCGCG
GTGGTGCGCTTACTCTTGCGCGCAGGGGCGGACCCCACCAAGGCAAACGA
GAAGGGAGAGAGTGCTTACTCTTTCTTGAATGCACACATGCACAAGCATG
CGAAAAAGATGGGAATGGTCATGGGCTCGTCGTCGCAGCAGCAGCAGCAG
GAGCGGCCGATTCTGCGCCTGAACAATAAGGGCCGAGCCTTATGTAAAAT
GGCAGGGATGGTGTTAGCAGGGGGGTCAATGCAGCGGGCGATGGTCCTTC
GCTTGCGCTGGAGAGGGGAAGGAGGGAGGATGATTAATGTGGTGGACGAG
GAGAAGGAGGAAGGGAAAGAGGGAGGGGGGGAAGGAGGGAGGGAGAAGGG
GGTAGTGCAGATGTTGGTGGATGAGACTGGTGACGACGTATTTGGGGAGG
TGATGCGCTACTTGGATACCACGTCGGGTTAA
back to top
Synonyms
Publications