NO12G00980, NO12G00980 (gene) Nannochloropsis oceanica

Overview
NameNO12G00980
Unique NameNO12G00980
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length438
Alignment locationchr12:312301..312738 -

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Properties
Property NameValue
DescriptionAcyltransferase family protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:312301..312738 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0016746transferase activity, transferring acyl groups
GO:0016740transferase activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO12G00980 vs. NCBI_GenBank
Match: XP_005853945.1 (acyltransferase family protein [Nannochloropsis gaditana CCMP526] >EKU22412.1 acyltransferase family protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 154.8 bits (390), Expect = 2.000e-34
Identity = 80/149 (53.69%), Postives = 99/149 (66.44%), Query Frame = 0 
Query:    2 LRVLLMLEGGWVWVYAQSRFGFVRRGEVSPD------VFVRWTAAGTMGCLLFVQLSPAMQWLLRLAPIRFVGYISSFCLYVVHGEVLNTFTAWLFLMLYREGGREGGWGYTSSALLEFLASFPLMVEFAWMMTVLIDDPSVRGWRGQY 145
            LRV L L    +W++ QS  GF  +  + P        F RWTA GT GCL+FVQL+P M+WLL   P+RFVGY+ SFCLY+VHGEVLNTF AWLFL LY+EG    G GY  S+L+    +FP+ +  AW+MTVL+DDPSVR  R  Y
Sbjct:   61 LRVTLALVSAGIWIHVQSTLGFQAQVSLPPGDADALLNFRRWTALGTCGCLVFVQLTPLMRWLLATPPLRFVGYV-SFCLYLVHGEVLNTFAAWLFLRLYQEG---QGLGYVPSSLVVLATAFPVSLVLAWVMTVLVDDPSVRLARAVY 205
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BLAST of NO12G00980 vs. NCBI_GenBank
Match: EWM25934.1 (acyltransferase 3 [Nannochloropsis gaditana])

HSP 1 Score: 154.8 bits (390), Expect = 2.000e-34
Identity = 80/149 (53.69%), Postives = 99/149 (66.44%), Query Frame = 0 
Query:    2 LRVLLMLEGGWVWVYAQSRFGFVRRGEVSPD------VFVRWTAAGTMGCLLFVQLSPAMQWLLRLAPIRFVGYISSFCLYVVHGEVLNTFTAWLFLMLYREGGREGGWGYTSSALLEFLASFPLMVEFAWMMTVLIDDPSVRGWRGQY 145
            LRV L L    +W++ QS  GF  +  + P        F RWTA GT GCL+FVQL+P M+WLL   P+RFVGY+ SFCLY+VHGEVLNTF AWLFL LY+EG    G GY  S+L+    +FP+ +  AW+MTVL+DDPSVR  R  Y
Sbjct:  348 LRVTLALVSAGIWIHVQSTLGFQAQVSLPPGDADALLNFRRWTALGTCGCLVFVQLTPLMRWLLATPPLRFVGYV-SFCLYLVHGEVLNTFAAWLFLRLYQEG---QGLGYVPSSLVVLATAFPVSLVLAWVMTVLVDDPSVRLARAVY 492
The following BLAST results are available for this feature:
BLAST of NO12G00980 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
XP_005853945.12.000e-3453.69acyltransferase family protein [Nannochloropsis ga... [more]
EWM25934.12.000e-3453.69acyltransferase 3 [Nannochloropsis gaditana][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR003ncniR003Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010012NSK010012Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G00980.1NO12G00980.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|570179gene_10880Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100134g14gene4598Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G00980.1NO12G00980.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G00980 ID=NO12G00980|Name=NO12G00980|organism=Nannochloropsis oceanica|type=gene|length=438bp
ATGTTGAGGGTGTTGTTGATGCTAGAGGGTGGATGGGTGTGGGTGTATGC
ACAGAGCCGGTTTGGATTTGTGAGGCGAGGGGAGGTGTCTCCGGACGTAT
TTGTGCGGTGGACCGCTGCTGGGACTATGGGTTGTTTGTTGTTCGTGCAG
TTAAGCCCGGCCATGCAGTGGCTGTTACGCTTAGCCCCGATACGGTTTGT
GGGCTACATCTCATCGTTTTGCCTGTACGTGGTGCACGGCGAGGTGTTGA
ACACGTTCACGGCATGGTTGTTTTTGATGTTGTACCGGGAGGGAGGGAGG
GAGGGGGGATGGGGGTATACAAGTTCTGCACTGTTGGAATTTCTGGCGAG
TTTCCCGTTGATGGTGGAGTTCGCGTGGATGATGACTGTCTTGATAGATG
ATCCGAGTGTAAGAGGGTGGCGAGGGCAGTATATTTAA
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protein sequence of NO12G00980.1

>NO12G00980.1-protein ID=NO12G00980.1-protein|Name=NO12G00980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=146bp
MLRVLLMLEGGWVWVYAQSRFGFVRRGEVSPDVFVRWTAAGTMGCLLFVQ
LSPAMQWLLRLAPIRFVGYISSFCLYVVHGEVLNTFTAWLFLMLYREGGR
EGGWGYTSSALLEFLASFPLMVEFAWMMTVLIDDPSVRGWRGQYI*
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Synonyms
Publications