NO12G00980.1, NO12G00980.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G00980.1
Unique NameNO12G00980.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length438
Alignment locationchr12:312301..312738 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:312301..312738 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G00980.1 vs.
Match: EWM25934.1 (acyltransferase 3 [Nannochloropsis gaditana])

HSP 1 Score: 154.8 bits (390), Expect = 2.000e-34
Identity = 80/149 (53.69%), Postives = 99/149 (66.44%), Query Frame = 0 
Query:    2 LRVLLMLEGGWVWVYAQSRFGFVRRGEVSPDV------FVRWTAAGTMGCLLFVQLSPAMQWLLRLAPIRFVGYISSFCLYVVHGEVLNTFTAWLFLMLYREGGREGGWGYTSSALLEFLASFPLMVEFAWMMTVLIDDPSVRGWRGQY 145
            LRV L L    +W++ QS  GF  +  + P        F RWTA GT GCL+FVQL+P M+WLL   P+RFVGY+ SFCLY+VHGEVLNTF AWLFL LY+EG    G GY  S+L+    +FP+ +  AW+MTVL+DDPSVR  R  Y
Sbjct:  348 LRVTLALVSAGIWIHVQSTLGFQAQVSLPPGDADALLNFRRWTALGTCGCLVFVQLTPLMRWLLATPPLRFVGYV-SFCLYLVHGEVLNTFAAWLFLRLYQEG---QGLGYVPSSLVVLATAFPVSLVLAWVMTVLVDDPSVRLARAVY 492
The following BLAST results are available for this feature:
BLAST of NO12G00980.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25934.12.000e-3453.69acyltransferase 3 [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G00980NO12G00980Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G00980.1NO12G00980.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G00980.1.cds1NO12G00980.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G00980.1 ID=NO12G00980.1|Name=NO12G00980.1|organism=Nannochloropsis oceanica|type=mRNA|length=438bp
ATGTTGAGGGTGTTGTTGATGCTAGAGGGTGGATGGGTGTGGGTGTATGC
ACAGAGCCGGTTTGGATTTGTGAGGCGAGGGGAGGTGTCTCCGGACGTAT
TTGTGCGGTGGACCGCTGCTGGGACTATGGGTTGTTTGTTGTTCGTGCAG
TTAAGCCCGGCCATGCAGTGGCTGTTACGCTTAGCCCCGATACGGTTTGT
GGGCTACATCTCATCGTTTTGCCTGTACGTGGTGCACGGCGAGGTGTTGA
ACACGTTCACGGCATGGTTGTTTTTGATGTTGTACCGGGAGGGAGGGAGG
GAGGGGGGATGGGGGTATACAAGTTCTGCACTGTTGGAATTTCTGGCGAG
TTTCCCGTTGATGGTGGAGTTCGCGTGGATGATGACTGTCTTGATAGATG
ATCCGAGTGTAAGAGGGTGGCGAGGGCAGTATATTTAA
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protein sequence of NO12G00980.1

>NO12G00980.1-protein ID=NO12G00980.1-protein|Name=NO12G00980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=146bp
MLRVLLMLEGGWVWVYAQSRFGFVRRGEVSPDVFVRWTAAGTMGCLLFVQ
LSPAMQWLLRLAPIRFVGYISSFCLYVVHGEVLNTFTAWLFLMLYREGGR
EGGWGYTSSALLEFLASFPLMVEFAWMMTVLIDDPSVRGWRGQYI*
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mRNA from alignment at chr12:312301..312738-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G00980.1 ID=NO12G00980.1|Name=NO12G00980.1|organism=Nannochloropsis oceanica|type=mRNA|length=438bp|location=Sequence derived from alignment at chr12:312301..312738- (Nannochloropsis oceanica)
ATGTTGAGGGTGTTGTTGATGCTAGAGGGTGGATGGGTGTGGGTGTATGC
ACAGAGCCGGTTTGGATTTGTGAGGCGAGGGGAGGTGTCTCCGGACGTAT
TTGTGCGGTGGACCGCTGCTGGGACTATGGGTTGTTTGTTGTTCGTGCAG
TTAAGCCCGGCCATGCAGTGGCTGTTACGCTTAGCCCCGATACGGTTTGT
GGGCTACATCTCATCGTTTTGCCTGTACGTGGTGCACGGCGAGGTGTTGA
ACACGTTCACGGCATGGTTGTTTTTGATGTTGTACCGGGAGGGAGGGAGG
GAGGGGGGATGGGGGTATACAAGTTCTGCACTGTTGGAATTTCTGGCGAG
TTTCCCGTTGATGGTGGAGTTCGCGTGGATGATGACTGTCTTGATAGATG
ATCCGAGTGTAAGAGGGTGGCGAGGGCAGTATATTTAA
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Coding sequence (CDS) from alignment at chr12:312301..312738-

>NO12G00980.1 ID=NO12G00980.1|Name=NO12G00980.1|organism=Nannochloropsis oceanica|type=CDS|length=438bp|location=Sequence derived from alignment at chr12:312301..312738- (Nannochloropsis oceanica)
ATGTTGAGGGTGTTGTTGATGCTAGAGGGTGGATGGGTGTGGGTGTATGC
ACAGAGCCGGTTTGGATTTGTGAGGCGAGGGGAGGTGTCTCCGGACGTAT
TTGTGCGGTGGACCGCTGCTGGGACTATGGGTTGTTTGTTGTTCGTGCAG
TTAAGCCCGGCCATGCAGTGGCTGTTACGCTTAGCCCCGATACGGTTTGT
GGGCTACATCTCATCGTTTTGCCTGTACGTGGTGCACGGCGAGGTGTTGA
ACACGTTCACGGCATGGTTGTTTTTGATGTTGTACCGGGAGGGAGGGAGG
GAGGGGGGATGGGGGTATACAAGTTCTGCACTGTTGGAATTTCTGGCGAG
TTTCCCGTTGATGGTGGAGTTCGCGTGGATGATGACTGTCTTGATAGATG
ATCCGAGTGTAAGAGGGTGGCGAGGGCAGTATATTTAA
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Synonyms
Publications