NO11G01820, NO11G01820 (gene) Nannochloropsis oceanica

Overview
NameNO11G01820
Unique NameNO11G01820
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2521
Alignment locationchr11:599052..601572 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:599052..601572 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR032710NTF2-like_dom_sf
IPR037401SnoaL-like
Homology
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BLAST of NO11G01820 vs. NCBI_GenBank
Match: EWM25036.1 (hypothetical protein Naga_100049g11 [Nannochloropsis gaditana])

HSP 1 Score: 492.7 bits (1267), Expect = 1.400e-135
Identity = 307/523 (58.70%), Postives = 358/523 (68.45%), Query Frame = 0 
Query:   19 ALLILGCVASLPTASAYLGP---VSGGSDMSAFYSLRPNI--GGGRGMTRGSPTALYVMNSDVGPQAGDEPEGTRVEEALRVTTRQIKALQRLVDGFQEIPSPDDPPAFPPVDVRLAVPSRETLEGDEAMVLGLNHKYYEGLNGRDVKSILSLWKGEGTVQMYANEDKIITGRDEIDKHFDSRFRNVWATNKHKARMDVTVEDERVFLRGINAFVTNKEVWENPISKEKKVMFATKIMTKSNGEWSIVHVHAGDGSQIEVNPNGQMKLTDGTRSPGQQQSLGGRSQQSPPQQLGAGAXXXXXXXXXXXXXXXXXXXXXXXXLSGESGFTADGREYRTIVTPEGYRII----------LGSATGAXXXXXXXXXXXXXXXXXXXXXXXXXXVVFRVLG-RVEEEEWRGEGEGG--------------GREGEEGLTRKTVEAIRQLCSEGRLTVLQKQKLIFSVIRSTKQEEVSQVEMAYELLVENALAGDESALEEFADQCVMLCAEGGAAHSLTYEEDSDDE 512
            ++L+LGC     TA AY+ P   +   S  S+  S+  ++  G GR  + G   A   M++D G   G+EPEGTRVEEALRVTTRQIKALQRLVD FQ++P  D PP FPP +VRL V +RE++EGD+A VL LN KYY+ LNGRDVKSILSLWK +G VQMYANED++I G +EIDKH DSRF+  WATNKHK RMDVT EDERVFLRGINA VTNKE+W NPISK+K +MF+TKI  KSNGEW +VHVH+GDGSQ+EV+PNGQMKL++G+R  GQQQ     S      +L AG       XXXXXXXXXXXXXXXXXX   ESGFTADGREYRTI+TPEGYRII          LG+ +G                           V+   LG R       GE   G                +G E L RKTV+A+RQLC EGRLTV QKQKLIFSVIRSTKQEEVSQVEMAY+LLVENALAG++SALEEFADQCV+LCA GGAA SL Y+E   +E
Sbjct:   13 SVLLLGCFQIPCTAWAYINPGGCLGSWSPSSSLSSMTGSLRAGSGRAFSAGLRMA---MSNDGGLPLGEEPEGTRVEEALRVTTRQIKALQRLVDSFQDVPPADQPPVFPPAEVRLPVATRESVEGDKAQVLELNAKYYDDLNGRDVKSILSLWKEDGAVQMYANEDRVIRGLEEIDKHMDSRFKQPWATNKHKERMDVTKEDERVFLRGINALVTNKEMWVNPISKDKLIMFSTKIWQKSNGEWRLVHVHSGDGSQVEVHPNGQMKLSEGSRGMGQQQLFPSSSSGVTGGRLEAG---QSQLXXXXXXXXXXXXXXXXXXXXXESGFTADGREYRTIMTPEGYRIIVGSGQAQGGLLGAGSGQGRSGQETKEALLKALIQDLSKNGKQEVIPLQLGARGGRGXXXGELFSGSLDXXXXXXXXXXXANDGLEDLGRKTVDAVRQLCHEGRLTVTQKQKLIFSVIRSTKQEEVSQVEMAYDLLVENALAGEDSALEEFADQCVLLCAAGGAASSLVYDEAGPEE 529
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BLAST of NO11G01820 vs. NCBI_GenBank
Match: EWM25037.1 (hypothetical protein Naga_100049g11 [Nannochloropsis gaditana])

HSP 1 Score: 334.7 bits (857), Expect = 5.000e-88
Identity = 171/267 (64.04%), Postives = 205/267 (76.78%), Query Frame = 0 
Query:   19 ALLILGCVASLPTASAYLGP---VSGGSDMSAFYSLRPNI--GGGRGMTRGSPTALYVMNSDVGPQAGDEPEGTRVEEALRVTTRQIKALQRLVDGFQEIPSPDDPPAFPPVDVRLAVPSRETLEGDEAMVLGLNHKYYEGLNGRDVKSILSLWKGEGTVQMYANEDKIITGRDEIDKHFDSRFRNVWATNKHKARMDVTVEDERVFLRGINAFVTNKEVWENPISKEKKVMFATKIMTKSNGEWSIVHVHAGDGSQIEVNPNGQMK 281
            ++L+LGC     TA AY+ P   +   S  S+  S+  ++  G GR  + G   A   M++D G   G+EPEGTRVEEALRVTTRQIKALQRLVD FQ++P  D PP FPP +VRL V +RE++EGD+A VL LN KYY+ LNGRDVKSILSLWK +G VQMYANED++I G +EIDKH DSRF+  WATNKHK RMDVT EDERVFLRGINA VTNKE+W NPISK+K +MF+TKI  KSNGEW +VHVH+GDGSQ+EV+PNGQMK
Sbjct:   13 SVLLLGCFQIPCTAWAYINPGGCLGSWSPSSSLSSMTGSLRAGSGRAFSAGLRMA---MSNDGGLPLGEEPEGTRVEEALRVTTRQIKALQRLVDSFQDVPPADQPPVFPPAEVRLPVATRESVEGDKAQVLELNAKYYDDLNGRDVKSILSLWKEDGAVQMYANEDRVIRGLEEIDKHMDSRFKQPWATNKHKERMDVTKEDERVFLRGINALVTNKEMWVNPISKDKLIMFSTKIWQKSNGEWRLVHVHSGDGSQVEVHPNGQMK 276
[Close]
BLAST of NO11G01820 vs. NCBI_GenBank
Match: XP_005852615.1 (hypothetical protein NGA_0700600, partial [Nannochloropsis gaditana CCMP526] >EKU23217.1 hypothetical protein NGA_0700600, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 144.8 bits (364), Expect = 7.300e-31
Identity = 79/104 (75.96%), Postives = 89/104 (85.58%), Query Frame = 0 
Query:  408 RGEGEGGGREGEEGLTRKTVEAIRQLCSEGRLTVLQKQKLIFSVIRSTKQEEVSQVEMAYELLVENALAGDESALEEFADQCVMLCAEGGAAHSLTYEEDSDDE 512
            RG G+ G  +G E L RKTV+A+RQLC EGRLTV QKQKLIFSVIRSTKQEEVSQVEMAY+LLVENALAG++SALEEFADQCV+LCA GGAA SL Y+E   +E
Sbjct:    9 RGGGD-GANDGLEDLGRKTVDAVRQLCHEGRLTVTQKQKLIFSVIRSTKQEEVSQVEMAYDLLVENALAGEDSALEEFADQCVLLCAAGGAASSLVYDEAGPEE 111
The following BLAST results are available for this feature:
BLAST of NO11G01820 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM25036.11.400e-13558.70hypothetical protein Naga_100049g11 [Nannochlorops... [more]
EWM25037.15.000e-8864.04hypothetical protein Naga_100049g11 [Nannochlorops... [more]
XP_005852615.17.300e-3175.96hypothetical protein NGA_0700600, partial [Nannoch... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL115nonsL115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002081NSK002081Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G01820.1NO11G01820.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|671236gene_5069Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100049g11gene5465Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G01820.1NO11G01820.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G01820 ID=NO11G01820|Name=NO11G01820|organism=Nannochloropsis oceanica|type=gene|length=2521bp
ATGGAGTGGAGAGCGTCCATCTGGTTGCGCTGCCAGAGCAGGAGGACAGC
GGCCGCATTGCTCATCCTAGGGTGCGTGGCGAGCCTCCCCACGGCTTCGG
CTTACTTGGGACCCGTCAGCGGCGGCAGCGACATGAGCGCGTTTTATTCG
TTGAGACCAAACATAGGAGGAGGGCGAGgtacgtgtggaagaaggaagga
tgagaaattttgcccggaaaggacaggggcgatcgcatgcgtacgtagaa
gatggtcacggtgggcgcacacggggaatgatagcctcctatcccgaatg
aaagataacatggacatggagaaggcatccacttaccgctgccactctcg
accctcaccatgctctcttcgtacccttcgaatcatcacccttgcgccct
tcgccccccgtcctccgtctcagGCATGACCCGAGGCAGCCCCACAGCCC
TATACGTGATGAACAGCGACGTCGGCCCCCAAGCCGGAGACGAACCAGAA
GGCACCCGTGTAGAAGAAGCCCTCCGAGTCACCACACGTCAAATCAAGGC
CTTACAACGTCTTGTCGATGGCTTTCAAGAAATCCCCTCTCCAGACGATC
CCCCGGCATTTCCCCCTGTCGATGTGCGTTTGGCCGTCCCCTCCCGGGAG
ACTTTGGAGGGAGATGAGGCAATGGTGTTGGGGTTAAACCACAAGTATTA
TGAGGGACTGAATGGAAGGGACGTGAAAAGCATTTTGTCGCTGTGGAAGG
GCGAGGGCACGGTGCAGATGTATGCGAATGAGGATAAGATCATAACGGGg
taagcgtttaggatgagaaagaggtagagaggaaatggggcgattgacaa
cgctctggtctattgcatcgtttggccaatgccttgtgtcgggcccatac
tcacccttccttccctccctcatcccttcctccctccctccccccctgca
gTCGCGACGAGATCGACAAACACTTCGACTCGCGCTTTCGCAACGTATGG
GCCACCAATAAACACAAGGCCCGGATGGACGTGACGGTGGAAGATGAGCG
AGTCTTCCTTCGGGGCATTAACGCGTTCGTGACCAATAAGGAGGTATGGG
AGAACCCTATCTCGAAAGAGAAGAAGGTCATGTTCGCTACCAAGATCATG
ACCAAAAGCAATGGGGAGTGGAGCATTGTCCACGTCCACGCGGGGGATGG
CAGCCAGATTGAGGTTAACCCGAACGGGCAGATGAAACgtgagcgtggag
agggaaggagggagggagggagagggagggagggatgtgcgtgtttttgc
gtctctatcctgttgtcctatccatcattcgactaaatcgatttttttct
cttccttccctcctcccccctttcatctctcctttacattagTCACGGAC
GGTACGCGCTCCCCTGGACAGCAGCAGAGTCTCGGCGGGCGGTCGCAGCA
GTCGCCACCACAACAGTTGGGGGCAGGGGCGCTCGGAGGTCTCCTGGGAG
GAGGAGACGCCGGGGGAGGAGCTGCGGGAGGAGCCATGGGATTGGGCGGT
ATGTTATCCGGTGAATCGGGCTTCACGGCGGATGGGAGGGAGTATCGAAC
GATCGTGACTCCTGAGGGGTACCGCATCATATTGGGGAGTGCCACGGGGG
CCGGTGGTGCATTAGGAGGAGGGGCAGGGATGGGAGGGAGgtcgggtcag
gagacgaaggaggccctgttgaaggctttgatcaacgatttgtctaagaa
tgggagacaggaaatcattcccctgcagTTGGGGTCCAGGGGAGGGAGGG
GGGAGGGGGTGGGGGGGAGTTGTTTTCCGGGTCCTTGGACGGGTCGAGGA
GGAGGAGTGGAGGGGAGAGGGGGAGGGAGGGGGTAGGGAGGGAGAGGAGG
GTTTGACGAGGAAGACAGTAGAAGCCATAAGGCAGTTGTGTTCAGAGGGA
AGGTTAACGGTGTTGCAGAAACAAAAACTTATATTTTCGGTGATCCGATC
GACGAAGCAGGAGGAGGTGAGCCAGGTCGAGATGGCATATGAGTTGTTGG
TGGAGAATGCATTGGCGGGTGATGAGAGTGCTTTGGAAGAATTTGCAGAT
CAGTGCGTGATGTTGTGTGCTGAGGGTGGAGCGGCGCACAGTTTGACTTA
TGAGGAGGACTCGGATGACGAAGATTTCGGGGAGGAGTAGCGAGGGAAGG
GAGTACAGGGGTCCAGTTTGACTCTTGAAGAGGACTCGGATGACGAAGAT
TTTGATGAGTAGAGAGGAAAGGGATGACAGAGGTTCTAGTAGCATTGGGT
GTGTAAACAGCGGCGTGTGATATTAACTCGCATTTTGGCCGGCTTCACTC
ACGGTCACAGGCACATTTGATGCCTGGAGAAGGAAAGGGACGCAAGTGAG
GGGATTGAGGGCTTGTACAAAGAGCGCAGCGCACGCGTAATGAAGCAAAA
TTAAGAAGAAGGAAAGGCCCAACCAATGTCTGGAATACCGCAGCCATTAG
GGGTAGCAAAGCGACGCGTAG
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protein sequence of NO11G01820.1

>NO11G01820.1-protein ID=NO11G01820.1-protein|Name=NO11G01820.1|organism=Nannochloropsis oceanica|type=polypeptide|length=517bp
MEWRASIWLRCQSRRTAAALLILGCVASLPTASAYLGPVSGGSDMSAFYS
LRPNIGGGRGMTRGSPTALYVMNSDVGPQAGDEPEGTRVEEALRVTTRQI
KALQRLVDGFQEIPSPDDPPAFPPVDVRLAVPSRETLEGDEAMVLGLNHK
YYEGLNGRDVKSILSLWKGEGTVQMYANEDKIITGRDEIDKHFDSRFRNV
WATNKHKARMDVTVEDERVFLRGINAFVTNKEVWENPISKEKKVMFATKI
MTKSNGEWSIVHVHAGDGSQIEVNPNGQMKLTDGTRSPGQQQSLGGRSQQ
SPPQQLGAGALGGLLGGGDAGGGAAGGAMGLGGMLSGESGFTADGREYRT
IVTPEGYRIILGSATGAGGALGGGAGMGGSWGPGEGGGRGWGGVVFRVLG
RVEEEEWRGEGEGGGREGEEGLTRKTVEAIRQLCSEGRLTVLQKQKLIFS
VIRSTKQEEVSQVEMAYELLVENALAGDESALEEFADQCVMLCAEGGAAH
SLTYEEDSDDEDFGEE*
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Synonyms
Publications