NO11G01820.1, NO11G01820.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G01820.1
Unique NameNO11G01820.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1882
Alignment locationchr11:599052..601572 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:599052..601572 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO11G01820.1 vs.
Match: EWM25036.1 (hypothetical protein Naga_100049g11 [Nannochloropsis gaditana])

HSP 1 Score: 525.8 bits (1353), Expect = 1.500e-145
Identity = 313/531 (58.95%), Postives = 369/531 (69.49%), Query Frame = 0 
Query:   19 ALLILGCVASLPTASAYLGP---VSGGSDMSAFYSLRPNI--GGGRGMTRGSPTALYVMNSDVGPQAGDEPEGTRVEEALRVTTRQIKALQRLVDGFQEIPSPDDPPAFPPVDVRLAVPSRETLEGDEAMVLGLNHKYYEGLNGRDVKSILSLWKGEGTVQMYANEDKIITGRDEIDKHFDSRFRNVWATNKHKARMDVTVEDERVFLRGINAFVTNKEVWENPISKEKKVMFATKIMTKSNGEWSIVHVHAGDGSQIEVNPNGQMKLTDGTRSPGQQQSLGGRSQQSPPQQLGAG------ALGGLLGGGDAGGGAAGGAMGLGGMLSGESGFTADGREYRTIVTPEGYRIILGSATGAGGALGGGAGMGGSWG-----------------------PGEGGGR----GWGGVVFRVLGRVEEEEWRGEGEGGGREGEEGLTRKTVEAIRQLCSEGRLTVLQKQKLIFSVIRSTKQEEVSQVEMAYELLVENALAGDESALEEFADQCVMLCAEGGAAHSLTYEEDSDDE 512
            ++L+LGC     TA AY+ P   +   S  S+  S+  ++  G GR  + G   A   M++D G   G+EPEGTRVEEALRVTTRQIKALQRLVD FQ++P  D PP FPP +VRL V +RE++EGD+A VL LN KYY+ LNGRDVKSILSLWK +G VQMYANED++I G +EIDKH DSRF+  WATNKHK RMDVT EDERVFLRGINA VTNKE+W NPISK+K +MF+TKI  KSNGEW +VHVH+GDGSQ+EV+PNGQMKL++G+R  GQQQ     S      +L AG       LGGLLGGG           GLGG++ GESGFTADGREYRTI+TPEGYRII+GS    GG LG G+G G S                         P + G R    G GG +F   G ++    R  G  G  +G E L RKTV+A+RQLC EGRLTV QKQKLIFSVIRSTKQEEVSQVEMAY+LLVENALAG++SALEEFADQCV+LCA GGAA SL Y+E   +E
Sbjct:   13 SVLLLGCFQIPCTAWAYINPGGCLGSWSPSSSLSSMTGSLRAGSGRAFSAGLRMA---MSNDGGLPLGEEPEGTRVEEALRVTTRQIKALQRLVDSFQDVPPADQPPVFPPAEVRLPVATRESVEGDKAQVLELNAKYYDDLNGRDVKSILSLWKEDGAVQMYANEDRVIRGLEEIDKHMDSRFKQPWATNKHKERMDVTKEDERVFLRGINALVTNKEMWVNPISKDKLIMFSTKIWQKSNGEWRLVHVHSGDGSQVEVHPNGQMKLSEGSRGMGQQQLFPSSSSGVTGGRLEAGQSQLGSVLGGLLGGGSG---------GLGGIVPGESGFTADGREYRTIMTPEGYRIIVGSGQAQGGLLGAGSGQGRSGQETKEALLKALIQDLSKNGKQEVIPLQLGARGGRGGGGGELFS--GSLDGGRGRRGGGDGANDGLEDLGRKTVDAVRQLCHEGRLTVTQKQKLIFSVIRSTKQEEVSQVEMAYDLLVENALAGEDSALEEFADQCVLLCAAGGAASSLVYDEAGPEE 529
The following BLAST results are available for this feature:
BLAST of NO11G01820.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25036.11.500e-14558.95hypothetical protein Naga_100049g11 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G01820NO11G01820Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G01820.1NO11G01820.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G01820.1.cds1NO11G01820.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G01820.1.cds2NO11G01820.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G01820.1.cds3NO11G01820.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G01820.1.cds4NO11G01820.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G01820.1.cds5NO11G01820.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G01820.1 ID=NO11G01820.1|Name=NO11G01820.1|organism=Nannochloropsis oceanica|type=mRNA|length=1882bp
ATGGAGTGGAGAGCGTCCATCTGGTTGCGCTGCCAGAGCAGGAGGACAGC
GGCCGCATTGCTCATCCTAGGGTGCGTGGCGAGCCTCCCCACGGCTTCGG
CTTACTTGGGACCCGTCAGCGGCGGCAGCGACATGAGCGCGTTTTATTCG
TTGAGACCAAACATAGGAGGAGGGCGAGGCATGACCCGAGGCAGCCCCAC
AGCCCTATACGTGATGAACAGCGACGTCGGCCCCCAAGCCGGAGACGAAC
CAGAAGGCACCCGTGTAGAAGAAGCCCTCCGAGTCACCACACGTCAAATC
AAGGCCTTACAACGTCTTGTCGATGGCTTTCAAGAAATCCCCTCTCCAGA
CGATCCCCCGGCATTTCCCCCTGTCGATGTGCGTTTGGCCGTCCCCTCCC
GGGAGACTTTGGAGGGAGATGAGGCAATGGTGTTGGGGTTAAACCACAAG
TATTATGAGGGACTGAATGGAAGGGACGTGAAAAGCATTTTGTCGCTGTG
GAAGGGCGAGGGCACGGTGCAGATGTATGCGAATGAGGATAAGATCATAA
CGGGTCGCGACGAGATCGACAAACACTTCGACTCGCGCTTTCGCAACGTA
TGGGCCACCAATAAACACAAGGCCCGGATGGACGTGACGGTGGAAGATGA
GCGAGTCTTCCTTCGGGGCATTAACGCGTTCGTGACCAATAAGGAGGTAT
GGGAGAACCCTATCTCGAAAGAGAAGAAGGTCATGTTCGCTACCAAGATC
ATGACCAAAAGCAATGGGGAGTGGAGCATTGTCCACGTCCACGCGGGGGA
TGGCAGCCAGATTGAGGTTAACCCGAACGGGCAGATGAAACTCACGGACG
GTACGCGCTCCCCTGGACAGCAGCAGAGTCTCGGCGGGCGGTCGCAGCAG
TCGCCACCACAACAGTTGGGGGCAGGGGCGCTCGGAGGTCTCCTGGGAGG
AGGAGACGCCGGGGGAGGAGCTGCGGGAGGAGCCATGGGATTGGGCGGTA
TGTTATCCGGTGAATCGGGCTTCACGGCGGATGGGAGGGAGTATCGAACG
ATCGTGACTCCTGAGGGGTACCGCATCATATTGGGGAGTGCCACGGGGGC
CGGTGGTGCATTAGGAGGAGGGGCAGGGATGGGAGGGAGTTGGGGTCCAG
GGGAGGGAGGGGGGAGGGGGTGGGGGGGAGTTGTTTTCCGGGTCCTTGGA
CGGGTCGAGGAGGAGGAGTGGAGGGGAGAGGGGGAGGGAGGGGGTAGGGA
GGGAGAGGAGGGTTTGACGAGGAAGACAGTAGAAGCCATAAGGCAGTTGT
GTTCAGAGGGAAGGTTAACGGTGTTGCAGAAACAAAAACTTATATTTTCG
GTGATCCGATCGACGAAGCAGGAGGAGGTGAGCCAGGTCGAGATGGCATA
TGAGTTGTTGGTGGAGAATGCATTGGCGGGTGATGAGAGTGCTTTGGAAG
AATTTGCAGATCAGTGCGTGATGTTGTGTGCTGAGGGTGGAGCGGCGCAC
AGTTTGACTTATGAGGAGGACTCGGATGACGAAGATTTCGGGGAGGAGTA
GCGAGGGAAGGGAGTACAGGGGTCCAGTTTGACTCTTGAAGAGGACTCGG
ATGACGAAGATTTTGATGAGTAGAGAGGAAAGGGATGACAGAGGTTCTAG
TAGCATTGGGTGTGTAAACAGCGGCGTGTGATATTAACTCGCATTTTGGC
CGGCTTCACTCACGGTCACAGGCACATTTGATGCCTGGAGAAGGAAAGGG
ACGCAAGTGAGGGGATTGAGGGCTTGTACAAAGAGCGCAGCGCACGCGTA
ATGAAGCAAAATTAAGAAGAAGGAAAGGCCCAACCAATGTCTGGAATACC
GCAGCCATTAGGGGTAGCAAAGCGACGCGTAG
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protein sequence of NO11G01820.1

>NO11G01820.1-protein ID=NO11G01820.1-protein|Name=NO11G01820.1|organism=Nannochloropsis oceanica|type=polypeptide|length=517bp
MEWRASIWLRCQSRRTAAALLILGCVASLPTASAYLGPVSGGSDMSAFYS
LRPNIGGGRGMTRGSPTALYVMNSDVGPQAGDEPEGTRVEEALRVTTRQI
KALQRLVDGFQEIPSPDDPPAFPPVDVRLAVPSRETLEGDEAMVLGLNHK
YYEGLNGRDVKSILSLWKGEGTVQMYANEDKIITGRDEIDKHFDSRFRNV
WATNKHKARMDVTVEDERVFLRGINAFVTNKEVWENPISKEKKVMFATKI
MTKSNGEWSIVHVHAGDGSQIEVNPNGQMKLTDGTRSPGQQQSLGGRSQQ
SPPQQLGAGALGGLLGGGDAGGGAAGGAMGLGGMLSGESGFTADGREYRT
IVTPEGYRIILGSATGAGGALGGGAGMGGSWGPGEGGGRGWGGVVFRVLG
RVEEEEWRGEGEGGGREGEEGLTRKTVEAIRQLCSEGRLTVLQKQKLIFS
VIRSTKQEEVSQVEMAYELLVENALAGDESALEEFADQCVMLCAEGGAAH
SLTYEEDSDDEDFGEE*
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mRNA from alignment at chr11:599052..601572+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G01820.1 ID=NO11G01820.1|Name=NO11G01820.1|organism=Nannochloropsis oceanica|type=mRNA|length=2521bp|location=Sequence derived from alignment at chr11:599052..601572+ (Nannochloropsis oceanica)
ATGGAGTGGAGAGCGTCCATCTGGTTGCGCTGCCAGAGCAGGAGGACAGC
GGCCGCATTGCTCATCCTAGGGTGCGTGGCGAGCCTCCCCACGGCTTCGG
CTTACTTGGGACCCGTCAGCGGCGGCAGCGACATGAGCGCGTTTTATTCG
TTGAGACCAAACATAGGAGGAGGGCGAGGTACGTGTGGAAGAAGGAAGGA
TGAGAAATTTTGCCCGGAAAGGACAGGGGCGATCGCATGCGTACGTAGAA
GATGGTCACGGTGGGCGCACACGGGGAATGATAGCCTCCTATCCCGAATG
AAAGATAACATGGACATGGAGAAGGCATCCACTTACCGCTGCCACTCTCG
ACCCTCACCATGCTCTCTTCGTACCCTTCGAATCATCACCCTTGCGCCCT
TCGCCCCCCGTCCTCCGTCTCAGGCATGACCCGAGGCAGCCCCACAGCCC
TATACGTGATGAACAGCGACGTCGGCCCCCAAGCCGGAGACGAACCAGAA
GGCACCCGTGTAGAAGAAGCCCTCCGAGTCACCACACGTCAAATCAAGGC
CTTACAACGTCTTGTCGATGGCTTTCAAGAAATCCCCTCTCCAGACGATC
CCCCGGCATTTCCCCCTGTCGATGTGCGTTTGGCCGTCCCCTCCCGGGAG
ACTTTGGAGGGAGATGAGGCAATGGTGTTGGGGTTAAACCACAAGTATTA
TGAGGGACTGAATGGAAGGGACGTGAAAAGCATTTTGTCGCTGTGGAAGG
GCGAGGGCACGGTGCAGATGTATGCGAATGAGGATAAGATCATAACGGGG
TAAGCGTTTAGGATGAGAAAGAGGTAGAGAGGAAATGGGGCGATTGACAA
CGCTCTGGTCTATTGCATCGTTTGGCCAATGCCTTGTGTCGGGCCCATAC
TCACCCTTCCTTCCCTCCCTCATCCCTTCCTCCCTCCCTCCCCCCCTGCA
GTCGCGACGAGATCGACAAACACTTCGACTCGCGCTTTCGCAACGTATGG
GCCACCAATAAACACAAGGCCCGGATGGACGTGACGGTGGAAGATGAGCG
AGTCTTCCTTCGGGGCATTAACGCGTTCGTGACCAATAAGGAGGTATGGG
AGAACCCTATCTCGAAAGAGAAGAAGGTCATGTTCGCTACCAAGATCATG
ACCAAAAGCAATGGGGAGTGGAGCATTGTCCACGTCCACGCGGGGGATGG
CAGCCAGATTGAGGTTAACCCGAACGGGCAGATGAAACGTGAGCGTGGAG
AGGGAAGGAGGGAGGGAGGGAGAGGGAGGGAGGGATGTGCGTGTTTTTGC
GTCTCTATCCTGTTGTCCTATCCATCATTCGACTAAATCGATTTTTTTCT
CTTCCTTCCCTCCTCCCCCCTTTCATCTCTCCTTTACATTAGTCACGGAC
GGTACGCGCTCCCCTGGACAGCAGCAGAGTCTCGGCGGGCGGTCGCAGCA
GTCGCCACCACAACAGTTGGGGGCAGGGGCGCTCGGAGGTCTCCTGGGAG
GAGGAGACGCCGGGGGAGGAGCTGCGGGAGGAGCCATGGGATTGGGCGGT
ATGTTATCCGGTGAATCGGGCTTCACGGCGGATGGGAGGGAGTATCGAAC
GATCGTGACTCCTGAGGGGTACCGCATCATATTGGGGAGTGCCACGGGGG
CCGGTGGTGCATTAGGAGGAGGGGCAGGGATGGGAGGGAGGTCGGGTCAG
GAGACGAAGGAGGCCCTGTTGAAGGCTTTGATCAACGATTTGTCTAAGAA
TGGGAGACAGGAAATCATTCCCCTGCAGTTGGGGTCCAGGGGAGGGAGGG
GGGAGGGGGTGGGGGGGAGTTGTTTTCCGGGTCCTTGGACGGGTCGAGGA
GGAGGAGTGGAGGGGAGAGGGGGAGGGAGGGGGTAGGGAGGGAGAGGAGG
GTTTGACGAGGAAGACAGTAGAAGCCATAAGGCAGTTGTGTTCAGAGGGA
AGGTTAACGGTGTTGCAGAAACAAAAACTTATATTTTCGGTGATCCGATC
GACGAAGCAGGAGGAGGTGAGCCAGGTCGAGATGGCATATGAGTTGTTGG
TGGAGAATGCATTGGCGGGTGATGAGAGTGCTTTGGAAGAATTTGCAGAT
CAGTGCGTGATGTTGTGTGCTGAGGGTGGAGCGGCGCACAGTTTGACTTA
TGAGGAGGACTCGGATGACGAAGATTTCGGGGAGGAGTAGCGAGGGAAGG
GAGTACAGGGGTCCAGTTTGACTCTTGAAGAGGACTCGGATGACGAAGAT
TTTGATGAGTAGAGAGGAAAGGGATGACAGAGGTTCTAGTAGCATTGGGT
GTGTAAACAGCGGCGTGTGATATTAACTCGCATTTTGGCCGGCTTCACTC
ACGGTCACAGGCACATTTGATGCCTGGAGAAGGAAAGGGACGCAAGTGAG
GGGATTGAGGGCTTGTACAAAGAGCGCAGCGCACGCGTAATGAAGCAAAA
TTAAGAAGAAGGAAAGGCCCAACCAATGTCTGGAATACCGCAGCCATTAG
GGGTAGCAAAGCGACGCGTAG
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Coding sequence (CDS) from alignment at chr11:599052..601572+

>NO11G01820.1 ID=NO11G01820.1|Name=NO11G01820.1|organism=Nannochloropsis oceanica|type=CDS|length=1551bp|location=Sequence derived from alignment at chr11:599052..601572+ (Nannochloropsis oceanica)
ATGGAGTGGAGAGCGTCCATCTGGTTGCGCTGCCAGAGCAGGAGGACAGC
GGCCGCATTGCTCATCCTAGGGTGCGTGGCGAGCCTCCCCACGGCTTCGG
CTTACTTGGGACCCGTCAGCGGCGGCAGCGACATGAGCGCGTTTTATTCG
TTGAGACCAAACATAGGAGGAGGGCGAGGCATGACCCGAGGCAGCCCCAC
AGCCCTATACGTGATGAACAGCGACGTCGGCCCCCAAGCCGGAGACGAAC
CAGAAGGCACCCGTGTAGAAGAAGCCCTCCGAGTCACCACACGTCAAATC
AAGGCCTTACAACGTCTTGTCGATGGCTTTCAAGAAATCCCCTCTCCAGA
CGATCCCCCGGCATTTCCCCCTGTCGATGTGCGTTTGGCCGTCCCCTCCC
GGGAGACTTTGGAGGGAGATGAGGCAATGGTGTTGGGGTTAAACCACAAG
TATTATGAGGGACTGAATGGAAGGGACGTGAAAAGCATTTTGTCGCTGTG
GAAGGGCGAGGGCACGGTGCAGATGTATGCGAATGAGGATAAGATCATAA
CGGGTCGCGACGAGATCGACAAACACTTCGACTCGCGCTTTCGCAACGTA
TGGGCCACCAATAAACACAAGGCCCGGATGGACGTGACGGTGGAAGATGA
GCGAGTCTTCCTTCGGGGCATTAACGCGTTCGTGACCAATAAGGAGGTAT
GGGAGAACCCTATCTCGAAAGAGAAGAAGGTCATGTTCGCTACCAAGATC
ATGACCAAAAGCAATGGGGAGTGGAGCATTGTCCACGTCCACGCGGGGGA
TGGCAGCCAGATTGAGGTTAACCCGAACGGGCAGATGAAACTCACGGACG
GTACGCGCTCCCCTGGACAGCAGCAGAGTCTCGGCGGGCGGTCGCAGCAG
TCGCCACCACAACAGTTGGGGGCAGGGGCGCTCGGAGGTCTCCTGGGAGG
AGGAGACGCCGGGGGAGGAGCTGCGGGAGGAGCCATGGGATTGGGCGGTA
TGTTATCCGGTGAATCGGGCTTCACGGCGGATGGGAGGGAGTATCGAACG
ATCGTGACTCCTGAGGGGTACCGCATCATATTGGGGAGTGCCACGGGGGC
CGGTGGTGCATTAGGAGGAGGGGCAGGGATGGGAGGGAGTTGGGGTCCAG
GGGAGGGAGGGGGGAGGGGGTGGGGGGGAGTTGTTTTCCGGGTCCTTGGA
CGGGTCGAGGAGGAGGAGTGGAGGGGAGAGGGGGAGGGAGGGGGTAGGGA
GGGAGAGGAGGGTTTGACGAGGAAGACAGTAGAAGCCATAAGGCAGTTGT
GTTCAGAGGGAAGGTTAACGGTGTTGCAGAAACAAAAACTTATATTTTCG
GTGATCCGATCGACGAAGCAGGAGGAGGTGAGCCAGGTCGAGATGGCATA
TGAGTTGTTGGTGGAGAATGCATTGGCGGGTGATGAGAGTGCTTTGGAAG
AATTTGCAGATCAGTGCGTGATGTTGTGTGCTGAGGGTGGAGCGGCGCAC
AGTTTGACTTATGAGGAGGACTCGGATGACGAAGATTTCGGGGAGGAGTA
G
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Synonyms
Publications