NO11G01420, NO11G01420 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of NO11G01420 vs. NCBI_GenBank
Match: EWM25080.1 (Dynein light chain [Nannochloropsis gaditana]) HSP 1 Score: 129.8 bits (325), Expect = 5.000e-27 Identity = 71/117 (60.68%), Postives = 80/117 (68.38%), Query Frame = 0 Query: 1 MSEVDVIIRDLKAQRGFSSYMIMNNDG------------------LVLDLACKAKGAVRDLLEPHENDVESMRIKTRDYELIVGQSGNFTLVVVQQQGHQMPSVAAQPLGSVSGKKS 100 MSEVDVI+RDLKAQ GFSSYMIMNNDG LVLDLA KAK A R+LLE EN+VES+R+K+RDYELIVGQSGNFTL VVQ Q H P + G +GKK+ Sbjct: 11 MSEVDVILRDLKAQPGFSSYMIMNNDGIVIKYENIEYKRAVQIAHLVLDLASKAKRAARNLLESPENEVESIRLKSRDYELIVGQSGNFTLAVVQNQTHHFPQASINRSGHANGKKA 127
BLAST of NO11G01420 vs. NCBI_GenBank
Match: XP_002296014.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >ACI64731.1 predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 77.4 bits (189), Expect = 2.900e-11 Identity = 37/116 (31.90%), Postives = 66/116 (56.90%), Query Frame = 0 Query: 1 MSEVDVIIRDLKAQRGFSSYMIMNNDGLVL----------------------DLACKAKGAVRDLLEPHENDVESMRIKTRDYELIVGQSGNFTLVVVQQQGHQMPSVAAQPLGSV 95 ++E+DV+++DLK GF +Y+I+N+DG+V+ +L K+K V++L +P + VE++R++T +YE+I+ G FTL V Q+ G + S A+ + V Sbjct: 6 VNEIDVLLKDLKKTPGFKAYLILNSDGIVIRWDQVGKQMPYQRAVQHAHHITELYIKSKAHVQELFDPQDRHVENVRVRTEEYEIIISSYGAFTLAVFQEDGRKAESALAEAVAVV 121
BLAST of NO11G01420 vs. NCBI_GenBank
Match: CBN74959.1 (hypothetical protein Esi_0060_0081 [Ectocarpus siliculosus]) HSP 1 Score: 77.0 bits (188), Expect = 3.800e-11 Identity = 39/91 (42.86%), Postives = 59/91 (64.84%), Query Frame = 0 Query: 1 MSEVDVIIRDLKAQRGFSSYMIMNNDG------------------LVLDLACKAKGAVRDLLEPHENDVESMRIKTRDYELIVGQSGNFTL 74 ++EV+ +I++LK GFS+Y+IMNNDG LVLDLA K+K +R+L EP +NDVES+R++T ++E+I+ +FTL Sbjct: 6 VNEVEEVIKELKTNPGFSAYVIMNNDGIVIKYESMEYRAAVHHAALVLDLASKSKKYMRELFEPPDNDVESLRLRTGEHEMIIALHESFTL 96
BLAST of NO11G01420 vs. NCBI_GenBank
Match: XP_002295665.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >ACI64382.1 predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 74.3 bits (181), Expect = 2.500e-10 Identity = 35/111 (31.53%), Postives = 63/111 (56.76%), Query Frame = 0 Query: 1 MSEVDVIIRDLKAQRGFSSYMIMNNDGLVL----------------------DLACKAKGAVRDLLEPHENDVESMRIKTRDYELIVGQSGNFTLVVVQQQGHQMPSVAAQ 90 ++E+D +++DLK GF +Y+I+N+DG+V+ +L K+K V++L +P + VE++R++T +YE+I+ G FTL V Q+ G + S A+ Sbjct: 6 VNEIDELLKDLKKTPGFKAYLILNSDGIVIRWDQVGKQMSYQRAVQHAHHITELYIKSKAHVQELFDPQDRHVENVRVRTEEYEMIISSCGAFTLAVFQEDGRKAESALAE 116
BLAST of NO11G01420 vs. NCBI_GenBank
Match: POM74788.1 (Dynein light chain 2B [Phytophthora palmivora var. palmivora]) HSP 1 Score: 67.8 bits (164), Expect = 2.300e-8 Identity = 38/110 (34.55%), Postives = 67/110 (60.91%), Query Frame = 0 Query: 2 SEVDVIIRDLKAQRGFSSYMIMNNDGL------------------VLDLACKAKGAVRDLL-EPHENDVESMRIKTRDYELIVGQSGNFTLVVVQQQGHQMPSVAAQPLG 93 +EV+ +I+ LK++ GFSSY++MNNDG+ VL L + K ++ L +P+E+++E +R++T+ +E+I+ Q FTLVV+QQ ++ A +P+G Sbjct: 7 NEVEEVIKQLKSKPGFSSYILMNNDGIVVKYENVEYKEAIMHAYHVLSLFGRTKKHLQKLFPDPNESEIEWLRLRTKMHEMIIAQHLRFTLVVLQQA--EVTDTAPEPIG 114
BLAST of NO11G01420 vs. NCBI_GenBank
Match: POM61484.1 (Dynein light chain 2B [Phytophthora palmivora var. palmivora]) HSP 1 Score: 67.0 bits (162), Expect = 3.900e-8 Identity = 38/110 (34.55%), Postives = 66/110 (60.00%), Query Frame = 0 Query: 2 SEVDVIIRDLKAQRGFSSYMIMNNDGL------------------VLDLACKAKGAVRDLL-EPHENDVESMRIKTRDYELIVGQSGNFTLVVVQQQGHQMPSVAAQPLG 93 +EV+ +I+ LK++ GFSSY++MNNDG+ VL L + K ++ L +P+E+++E +R++T+ +E+I+ Q FTLVV+QQ + A +P+G Sbjct: 7 NEVEEVIKQLKSKPGFSSYILMNNDGIVVKYENVEYKEAIMHAYHVLSLFGRTKKHLQKLFPDPNESEIEWLRLRTKMHEMIIAQHLRFTLVVLQQA--EATDTAPEPIG 114
BLAST of NO11G01420 vs. NCBI_GenBank
Match: XP_009535175.1 (hypothetical protein PHYSODRAFT_338978 [Phytophthora sojae] >EGZ10314.1 hypothetical protein PHYSODRAFT_338978 [Phytophthora sojae]) HSP 1 Score: 65.9 bits (159), Expect = 8.800e-8 Identity = 37/110 (33.64%), Postives = 66/110 (60.00%), Query Frame = 0 Query: 2 SEVDVIIRDLKAQRGFSSYMIMNNDGL------------------VLDLACKAKGAVRDLL-EPHENDVESMRIKTRDYELIVGQSGNFTLVVVQQQGHQMPSVAAQPLG 93 +EV+ +I+ LK++ GFSSY++MNNDG+ VL L + K ++ L +P+++++E +R++T+ +E+I+ Q FTLVV+QQ + A +P+G Sbjct: 7 NEVEEVIKQLKSKPGFSSYILMNNDGIVVKYENLEYKEAIMHAYHVLSLYGRTKKHLQKLFPDPNDSEIEWLRLRTKMHEMIIAQHLRFTLVVLQQA--EATDTAPEPIG 114
BLAST of NO11G01420 vs. NCBI_GenBank
Match: ETI54628.1 (hypothetical protein F443_02596 [Phytophthora parasitica P1569] >ETK94503.1 hypothetical protein L915_02479 [Phytophthora parasitica] >ETL47878.1 hypothetical protein L916_02451 [Phytophthora parasitica] >ETM00990.1 hypothetical protein L917_02379 [Phytophthora parasitica] >ETO83389.1 hypothetical protein F444_02595 [Phytophthora parasitica P1976] >ETP24471.1 hypothetical protein F441_02549 [Phytophthora parasitica CJ01A1]) HSP 1 Score: 65.9 bits (159), Expect = 8.800e-8 Identity = 37/110 (33.64%), Postives = 65/110 (59.09%), Query Frame = 0 Query: 2 SEVDVIIRDLKAQRGFSSYMIMNNDGL------------------VLDLACKAKGAVRDLL-EPHENDVESMRIKTRDYELIVGQSGNFTLVVVQQQGHQMPSVAAQPLG 93 +EV+ +I+ LK++ GFSSY++MNNDG+ VL L + K + L +P+E+++E +R++T+ +E+I+ Q FT+VV+QQ + A +P+G Sbjct: 7 NEVEEVIKQLKSKPGFSSYILMNNDGIVVKYENLEYKEAIMHAYHVLSLYGRTKKHLHKLFPDPNESEIEWLRLRTKMHEMIIAQHLRFTIVVLQQA--EATDTAPEPIG 114
BLAST of NO11G01420 vs. NCBI_GenBank
Match: XP_002997563.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY68633.1 conserved hypothetical protein [Phytophthora infestans T30-4]) HSP 1 Score: 65.9 bits (159), Expect = 8.800e-8 Identity = 38/110 (34.55%), Postives = 65/110 (59.09%), Query Frame = 0 Query: 2 SEVDVIIRDLKAQRGFSSYMIMNNDGL------------------VLDLACKAKGAVRDLL-EPHENDVESMRIKTRDYELIVGQSGNFTLVVVQQQGHQMPSVAAQPLG 93 +EV+ +I+ LK++ GFSSY++MNNDG+ VL L + K + L +P+E+++E +R++T+ +E+I+ Q FTLVV+QQ + A +P+G Sbjct: 7 NEVEEVIKQLKSKPGFSSYILMNNDGIVVKYENLEYKEAIMHAYHVLSLYGRTKKHLYKLFPDPNESEIEWLRLRTKMHEMIIAQHLRFTLVVLQQA--EATDTAPEPIG 114
BLAST of NO11G01420 vs. NCBI_GenBank
Match: ETM54166.1 (hypothetical protein L914_02474 [Phytophthora parasitica] >ETP52419.1 hypothetical protein F442_02574 [Phytophthora parasitica P10297]) HSP 1 Score: 65.5 bits (158), Expect = 1.100e-7 Identity = 36/110 (32.73%), Postives = 65/110 (59.09%), Query Frame = 0 Query: 2 SEVDVIIRDLKAQRGFSSYMIMNNDGL------------------VLDLACKAKGAVRDLL-EPHENDVESMRIKTRDYELIVGQSGNFTLVVVQQQGHQMPSVAAQPLG 93 +EV+ +I+ LK++ GFSSY++MNNDG+ VL L + K + L +P+E+++E +R++T+ +E+++ Q FT+VV+QQ + A +P+G Sbjct: 7 NEVEEVIKQLKSKPGFSSYILMNNDGIVVKYENLEYKEAIMHAYHVLSLYGRTKKHLHKLFPDPNESEIEWLRLRTKMHEMVIAQHLRFTIVVLQQA--EATDTAPEPIG 114 The following BLAST results are available for this feature:
BLAST of NO11G01420 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 19
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO11G01420 ID=NO11G01420|Name=NO11G01420|organism=Nannochloropsis oceanica|type=gene|length=510bpback to top protein sequence of NO11G01420.1 >NO11G01420.1-protein ID=NO11G01420.1-protein|Name=NO11G01420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=105bpback to top Synonyms
Publications
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