NO11G01420.1, NO11G01420.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G01420.1
Unique NameNO11G01420.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length315
Alignment locationchr11:484900..485409 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:484900..485409 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO11G01420.1 vs.
Match: EWM25080.1 (Dynein light chain [Nannochloropsis gaditana])

HSP 1 Score: 129.8 bits (325), Expect = 5.000e-27
Identity = 71/117 (60.68%), Postives = 80/117 (68.38%), Query Frame = 0 
Query:    1 MSEVDVIIRDLKAQRGFSSYMIMNNDG------------------LVLDLACKAKGAVRDLLEPHENDVESMRIKTRDYELIVGQSGNFTLVVVQQQGHQMPSVAAQPLGSVSGKKS 100
            MSEVDVI+RDLKAQ GFSSYMIMNNDG                  LVLDLA KAK A R+LLE  EN+VES+R+K+RDYELIVGQSGNFTL VVQ Q H  P  +    G  +GKK+
Sbjct:   11 MSEVDVILRDLKAQPGFSSYMIMNNDGIVIKYENIEYKRAVQIAHLVLDLASKAKRAARNLLESPENEVESIRLKSRDYELIVGQSGNFTLAVVQNQTHHFPQASINRSGHANGKKA 127
The following BLAST results are available for this feature:
BLAST of NO11G01420.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25080.15.000e-2760.68Dynein light chain [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G01420NO11G01420Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G01420.1NO11G01420.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G01420.1.cds1NO11G01420.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G01420.1.cds2NO11G01420.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G01420.1.cds3NO11G01420.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G01420.1 ID=NO11G01420.1|Name=NO11G01420.1|organism=Nannochloropsis oceanica|type=mRNA|length=315bp
ATGAGTGAGGTGGACGTCATCATCCGAGATCTAAAGGCTCAACGGGGCTT
TTCCTCCTACATGATAATGAACAACGACGGTCTGGTGCTTGACCTGGCAT
GCAAGGCCAAGGGAGCTGTGCGCGATTTGTTGGAGCCCCACGAGAATGAT
GTCGAATCCATGCGGATTAAAACGAGGGATTACGAGCTCATCGTGGGGCA
GAGTGGAAACTTTACTTTGGTGGTTGTACAGCAACAAGGCCATCAGATGC
CTTCGGTAGCCGCGCAGCCTCTTGGCAGTGTCAGCGGCAAGAAGAGCGAT
GGTATTGTGAAGTAA
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protein sequence of NO11G01420.1

>NO11G01420.1-protein ID=NO11G01420.1-protein|Name=NO11G01420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=105bp
MSEVDVIIRDLKAQRGFSSYMIMNNDGLVLDLACKAKGAVRDLLEPHEND
VESMRIKTRDYELIVGQSGNFTLVVVQQQGHQMPSVAAQPLGSVSGKKSD
GIVK*
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mRNA from alignment at chr11:484900..485409-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G01420.1 ID=NO11G01420.1|Name=NO11G01420.1|organism=Nannochloropsis oceanica|type=mRNA|length=510bp|location=Sequence derived from alignment at chr11:484900..485409- (Nannochloropsis oceanica)
ATGAGTGAGGTGGACGTCATCATCCGAGATCTAAAGGCTCAACGGGGCTT
TTCCTCCTACATGATAATGAACAACGACGGTAGGTCTGATGATTTTGGAA
CTGTACCTTTACTTTCTCTGATGTTTTTTTTTTTACCAATAAAAGGAATC
ATTATCAAGTACGATAACGTCGAATACAGAAGGGCATTGCACATTGCAGG
TCTGGTGCTTGACCTGGCATGCAAGGCCAAGGGAGCTGTGCGCGATTTGT
TGGAGCCCCACGAGGTACGACTTAAAACGAGCCACTCAACCAGCACTTCA
TATTTTTATTTCCTATTCTCTCGTATTTCACTCACATAGAATGATGTCGA
ATCCATGCGGATTAAAACGAGGGATTACGAGCTCATCGTGGGGCAGAGTG
GAAACTTTACTTTGGTGGTTGTACAGCAACAAGGCCATCAGATGCCTTCG
GTAGCCGCGCAGCCTCTTGGCAGTGTCAGCGGCAAGAAGAGCGATGGTAT
TGTGAAGTAA
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Coding sequence (CDS) from alignment at chr11:484900..485409-

>NO11G01420.1 ID=NO11G01420.1|Name=NO11G01420.1|organism=Nannochloropsis oceanica|type=CDS|length=315bp|location=Sequence derived from alignment at chr11:484900..485409- (Nannochloropsis oceanica)
ATGAGTGAGGTGGACGTCATCATCCGAGATCTAAAGGCTCAACGGGGCTT
TTCCTCCTACATGATAATGAACAACGACGGTCTGGTGCTTGACCTGGCAT
GCAAGGCCAAGGGAGCTGTGCGCGATTTGTTGGAGCCCCACGAGAATGAT
GTCGAATCCATGCGGATTAAAACGAGGGATTACGAGCTCATCGTGGGGCA
GAGTGGAAACTTTACTTTGGTGGTTGTACAGCAACAAGGCCATCAGATGC
CTTCGGTAGCCGCGCAGCCTCTTGGCAGTGTCAGCGGCAAGAAGAGCGAT
GGTATTGTGAAGTAA
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Synonyms
Publications