NO11G01420, NO11G01420 (gene) Nannochloropsis oceanica

Overview
NameNO11G01420
Unique NameNO11G01420
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length510
Alignment locationchr11:484900..485409 -

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Properties
Property NameValue
DescriptionDynein light chain
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:484900..485409 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO11G01420 vs. NCBI_GenBank
Match: EWM25080.1 (Dynein light chain [Nannochloropsis gaditana])

HSP 1 Score: 129.8 bits (325), Expect = 5.000e-27
Identity = 71/117 (60.68%), Postives = 80/117 (68.38%), Query Frame = 0
Query:    1 MSEVDVIIRDLKAQRGFSSYMIMNNDG------------------LVLDLACKAKGAVRDLLEPHENDVESMRIKTRDYELIVGQSGNFTLVVVQQQGHQMPSVAAQPLGSVSGKKS 100
            MSEVDVI+RDLKAQ GFSSYMIMNNDG                  LVLDLA KAK A R+LLE  EN+VES+R+K+RDYELIVGQSGNFTL VVQ Q H  P  +    G  +GKK+
Sbjct:   11 MSEVDVILRDLKAQPGFSSYMIMNNDGIVIKYENIEYKRAVQIAHLVLDLASKAKRAARNLLESPENEVESIRLKSRDYELIVGQSGNFTLAVVQNQTHHFPQASINRSGHANGKKA 127          
BLAST of NO11G01420 vs. NCBI_GenBank
Match: XP_002296014.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >ACI64731.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 77.4 bits (189), Expect = 2.900e-11
Identity = 37/116 (31.90%), Postives = 66/116 (56.90%), Query Frame = 0
Query:    1 MSEVDVIIRDLKAQRGFSSYMIMNNDGLVL----------------------DLACKAKGAVRDLLEPHENDVESMRIKTRDYELIVGQSGNFTLVVVQQQGHQMPSVAAQPLGSV 95
            ++E+DV+++DLK   GF +Y+I+N+DG+V+                      +L  K+K  V++L +P +  VE++R++T +YE+I+   G FTL V Q+ G +  S  A+ +  V
Sbjct:    6 VNEIDVLLKDLKKTPGFKAYLILNSDGIVIRWDQVGKQMPYQRAVQHAHHITELYIKSKAHVQELFDPQDRHVENVRVRTEEYEIIISSYGAFTLAVFQEDGRKAESALAEAVAVV 121          
BLAST of NO11G01420 vs. NCBI_GenBank
Match: CBN74959.1 (hypothetical protein Esi_0060_0081 [Ectocarpus siliculosus])

HSP 1 Score: 77.0 bits (188), Expect = 3.800e-11
Identity = 39/91 (42.86%), Postives = 59/91 (64.84%), Query Frame = 0
Query:    1 MSEVDVIIRDLKAQRGFSSYMIMNNDG------------------LVLDLACKAKGAVRDLLEPHENDVESMRIKTRDYELIVGQSGNFTL 74
            ++EV+ +I++LK   GFS+Y+IMNNDG                  LVLDLA K+K  +R+L EP +NDVES+R++T ++E+I+    +FTL
Sbjct:    6 VNEVEEVIKELKTNPGFSAYVIMNNDGIVIKYESMEYRAAVHHAALVLDLASKSKKYMRELFEPPDNDVESLRLRTGEHEMIIALHESFTL 96          
BLAST of NO11G01420 vs. NCBI_GenBank
Match: XP_002295665.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >ACI64382.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 74.3 bits (181), Expect = 2.500e-10
Identity = 35/111 (31.53%), Postives = 63/111 (56.76%), Query Frame = 0
Query:    1 MSEVDVIIRDLKAQRGFSSYMIMNNDGLVL----------------------DLACKAKGAVRDLLEPHENDVESMRIKTRDYELIVGQSGNFTLVVVQQQGHQMPSVAAQ 90
            ++E+D +++DLK   GF +Y+I+N+DG+V+                      +L  K+K  V++L +P +  VE++R++T +YE+I+   G FTL V Q+ G +  S  A+
Sbjct:    6 VNEIDELLKDLKKTPGFKAYLILNSDGIVIRWDQVGKQMSYQRAVQHAHHITELYIKSKAHVQELFDPQDRHVENVRVRTEEYEMIISSCGAFTLAVFQEDGRKAESALAE 116          
BLAST of NO11G01420 vs. NCBI_GenBank
Match: POM74788.1 (Dynein light chain 2B [Phytophthora palmivora var. palmivora])

HSP 1 Score: 67.8 bits (164), Expect = 2.300e-8
Identity = 38/110 (34.55%), Postives = 67/110 (60.91%), Query Frame = 0
Query:    2 SEVDVIIRDLKAQRGFSSYMIMNNDGL------------------VLDLACKAKGAVRDLL-EPHENDVESMRIKTRDYELIVGQSGNFTLVVVQQQGHQMPSVAAQPLG 93
            +EV+ +I+ LK++ GFSSY++MNNDG+                  VL L  + K  ++ L  +P+E+++E +R++T+ +E+I+ Q   FTLVV+QQ   ++   A +P+G
Sbjct:    7 NEVEEVIKQLKSKPGFSSYILMNNDGIVVKYENVEYKEAIMHAYHVLSLFGRTKKHLQKLFPDPNESEIEWLRLRTKMHEMIIAQHLRFTLVVLQQA--EVTDTAPEPIG 114          
BLAST of NO11G01420 vs. NCBI_GenBank
Match: POM61484.1 (Dynein light chain 2B [Phytophthora palmivora var. palmivora])

HSP 1 Score: 67.0 bits (162), Expect = 3.900e-8
Identity = 38/110 (34.55%), Postives = 66/110 (60.00%), Query Frame = 0
Query:    2 SEVDVIIRDLKAQRGFSSYMIMNNDGL------------------VLDLACKAKGAVRDLL-EPHENDVESMRIKTRDYELIVGQSGNFTLVVVQQQGHQMPSVAAQPLG 93
            +EV+ +I+ LK++ GFSSY++MNNDG+                  VL L  + K  ++ L  +P+E+++E +R++T+ +E+I+ Q   FTLVV+QQ   +    A +P+G
Sbjct:    7 NEVEEVIKQLKSKPGFSSYILMNNDGIVVKYENVEYKEAIMHAYHVLSLFGRTKKHLQKLFPDPNESEIEWLRLRTKMHEMIIAQHLRFTLVVLQQA--EATDTAPEPIG 114          
BLAST of NO11G01420 vs. NCBI_GenBank
Match: XP_009535175.1 (hypothetical protein PHYSODRAFT_338978 [Phytophthora sojae] >EGZ10314.1 hypothetical protein PHYSODRAFT_338978 [Phytophthora sojae])

HSP 1 Score: 65.9 bits (159), Expect = 8.800e-8
Identity = 37/110 (33.64%), Postives = 66/110 (60.00%), Query Frame = 0
Query:    2 SEVDVIIRDLKAQRGFSSYMIMNNDGL------------------VLDLACKAKGAVRDLL-EPHENDVESMRIKTRDYELIVGQSGNFTLVVVQQQGHQMPSVAAQPLG 93
            +EV+ +I+ LK++ GFSSY++MNNDG+                  VL L  + K  ++ L  +P+++++E +R++T+ +E+I+ Q   FTLVV+QQ   +    A +P+G
Sbjct:    7 NEVEEVIKQLKSKPGFSSYILMNNDGIVVKYENLEYKEAIMHAYHVLSLYGRTKKHLQKLFPDPNDSEIEWLRLRTKMHEMIIAQHLRFTLVVLQQA--EATDTAPEPIG 114          
BLAST of NO11G01420 vs. NCBI_GenBank
Match: ETI54628.1 (hypothetical protein F443_02596 [Phytophthora parasitica P1569] >ETK94503.1 hypothetical protein L915_02479 [Phytophthora parasitica] >ETL47878.1 hypothetical protein L916_02451 [Phytophthora parasitica] >ETM00990.1 hypothetical protein L917_02379 [Phytophthora parasitica] >ETO83389.1 hypothetical protein F444_02595 [Phytophthora parasitica P1976] >ETP24471.1 hypothetical protein F441_02549 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 65.9 bits (159), Expect = 8.800e-8
Identity = 37/110 (33.64%), Postives = 65/110 (59.09%), Query Frame = 0
Query:    2 SEVDVIIRDLKAQRGFSSYMIMNNDGL------------------VLDLACKAKGAVRDLL-EPHENDVESMRIKTRDYELIVGQSGNFTLVVVQQQGHQMPSVAAQPLG 93
            +EV+ +I+ LK++ GFSSY++MNNDG+                  VL L  + K  +  L  +P+E+++E +R++T+ +E+I+ Q   FT+VV+QQ   +    A +P+G
Sbjct:    7 NEVEEVIKQLKSKPGFSSYILMNNDGIVVKYENLEYKEAIMHAYHVLSLYGRTKKHLHKLFPDPNESEIEWLRLRTKMHEMIIAQHLRFTIVVLQQA--EATDTAPEPIG 114          
BLAST of NO11G01420 vs. NCBI_GenBank
Match: XP_002997563.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY68633.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 65.9 bits (159), Expect = 8.800e-8
Identity = 38/110 (34.55%), Postives = 65/110 (59.09%), Query Frame = 0
Query:    2 SEVDVIIRDLKAQRGFSSYMIMNNDGL------------------VLDLACKAKGAVRDLL-EPHENDVESMRIKTRDYELIVGQSGNFTLVVVQQQGHQMPSVAAQPLG 93
            +EV+ +I+ LK++ GFSSY++MNNDG+                  VL L  + K  +  L  +P+E+++E +R++T+ +E+I+ Q   FTLVV+QQ   +    A +P+G
Sbjct:    7 NEVEEVIKQLKSKPGFSSYILMNNDGIVVKYENLEYKEAIMHAYHVLSLYGRTKKHLYKLFPDPNESEIEWLRLRTKMHEMIIAQHLRFTLVVLQQA--EATDTAPEPIG 114          
BLAST of NO11G01420 vs. NCBI_GenBank
Match: ETM54166.1 (hypothetical protein L914_02474 [Phytophthora parasitica] >ETP52419.1 hypothetical protein F442_02574 [Phytophthora parasitica P10297])

HSP 1 Score: 65.5 bits (158), Expect = 1.100e-7
Identity = 36/110 (32.73%), Postives = 65/110 (59.09%), Query Frame = 0
Query:    2 SEVDVIIRDLKAQRGFSSYMIMNNDGL------------------VLDLACKAKGAVRDLL-EPHENDVESMRIKTRDYELIVGQSGNFTLVVVQQQGHQMPSVAAQPLG 93
            +EV+ +I+ LK++ GFSSY++MNNDG+                  VL L  + K  +  L  +P+E+++E +R++T+ +E+++ Q   FT+VV+QQ   +    A +P+G
Sbjct:    7 NEVEEVIKQLKSKPGFSSYILMNNDGIVVKYENLEYKEAIMHAYHVLSLYGRTKKHLHKLFPDPNESEIEWLRLRTKMHEMVIAQHLRFTIVVLQQA--EATDTAPEPIG 114          
The following BLAST results are available for this feature:
BLAST of NO11G01420 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 19
Match NameE-valueIdentityDescription
EWM25080.15.000e-2760.68Dynein light chain [Nannochloropsis gaditana][more]
XP_002296014.12.900e-1131.90predicted protein [Thalassiosira pseudonana CCMP13... [more]
CBN74959.13.800e-1142.86hypothetical protein Esi_0060_0081 [Ectocarpus sil... [more]
XP_002295665.12.500e-1031.53predicted protein [Thalassiosira pseudonana CCMP13... [more]
POM74788.12.300e-834.55Dynein light chain 2B [Phytophthora palmivora var.... [more]
POM61484.13.900e-834.55Dynein light chain 2B [Phytophthora palmivora var.... [more]
XP_009535175.18.800e-833.64hypothetical protein PHYSODRAFT_338978 [Phytophtho... [more]
ETI54628.18.800e-833.64hypothetical protein F443_02596 [Phytophthora para... [more]
XP_002997563.18.800e-834.55conserved hypothetical protein [Phytophthora infes... [more]
ETM54166.11.100e-732.73hypothetical protein L914_02474 [Phytophthora para... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL116nonsL116Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL115nonsL115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR019ngnoR019Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002124NSK002124Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G01420.1NO11G01420.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|528919gene_5024Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100098g8gene5423Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G01420.1NO11G01420.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G01420 ID=NO11G01420|Name=NO11G01420|organism=Nannochloropsis oceanica|type=gene|length=510bp
ATGAGTGAGGTGGACGTCATCATCCGAGATCTAAAGGCTCAACGGGGCTT
TTCCTCCTACATGATAATGAACAACGACGgtaggtctgatgattttggaa
ctgtacctttactttctctgatgtttttttttttaccaataaaaggaatc
attatcaagtacgataacgtcgaatacagaagggcattgcacattgcagG
TCTGGTGCTTGACCTGGCATGCAAGGCCAAGGGAGCTGTGCGCGATTTGT
TGGAGCCCCACGAGgtacgacttaaaacgagccactcaaccagcacttca
tatttttatttcctattctctcgtatttcactcacatagAATGATGTCGA
ATCCATGCGGATTAAAACGAGGGATTACGAGCTCATCGTGGGGCAGAGTG
GAAACTTTACTTTGGTGGTTGTACAGCAACAAGGCCATCAGATGCCTTCG
GTAGCCGCGCAGCCTCTTGGCAGTGTCAGCGGCAAGAAGAGCGATGGTAT
TGTGAAGTAA
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protein sequence of NO11G01420.1

>NO11G01420.1-protein ID=NO11G01420.1-protein|Name=NO11G01420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=105bp
MSEVDVIIRDLKAQRGFSSYMIMNNDGLVLDLACKAKGAVRDLLEPHEND
VESMRIKTRDYELIVGQSGNFTLVVVQQQGHQMPSVAAQPLGSVSGKKSD
GIVK*
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Synonyms
Publications