NO01G00140, NO01G00140 (gene) Nannochloropsis oceanica

Overview
NameNO01G00140
Unique NameNO01G00140
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length564
Alignment locationchr1:22682..23245 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:22682..23245 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO01G00140 vs. NCBI_GenBank
Match: EWM28943.1 (hypothetical protein Naga_100347g2 [Nannochloropsis gaditana])

HSP 1 Score: 104.4 bits (259), Expect = 3.500e-19
Identity = 83/179 (46.37%), Postives = 97/179 (54.19%), Query Frame = 0 
Query:    1 MQRHSTSIRGLARDTEKAVLEKFKVDLSRTLEGGRERGVSVSLY--TEEEAEAM----------------------DKGLKEKDQDEQKEESSG-------------NSHDKAAEDARLRELVESLGLAEALNLDDL----EG--RGGYADPTSPFAQKAVAAYEAFVQAQKKGEAEGG 137
            MQ+HS SIRGLARDTEK VLEK + DL   L GG            T  EAEAM                      DKGL++    E + + SG                DK  EDARLREL+E+LGLAEAL+L++     EG  + G+ADP SPFA+KAVAAYEAFVQAQK   AE G
Sbjct:  223 MQQHSLSIRGLARDTEKTVLEKLESDLVVALRGGEXXXXXXXXXXRTGSEAEAMEGFFEAVPASSEAVDVDDEHLEDKGLRQGPGVEGEGQGSGRQTKSETGPEDRVEKPDKEEEDARLRELIETLGLAEALDLEERGEGGEGGQKNGWADPNSPFAKKAVAAYEAFVQAQKGPGAEQG 401
The following BLAST results are available for this feature:
BLAST of NO01G00140 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28943.13.500e-1946.37hypothetical protein Naga_100347g2 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL007nonsL007Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR042ncniR042Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G00140.1NO01G00140.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G00140.1NO01G00140.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G00140 ID=NO01G00140|Name=NO01G00140|organism=Nannochloropsis oceanica|type=gene|length=564bp
ATGCAGCGGCATTCCACATCCATTCGCGGGCTTGCACGGGATACGGAGAA
GGCGGTCCTGGAGAAGTTTAAGGTAGACTTGTCCCGGACTTTGGAAGGAG
GAAGGGAGCGAGGAGTGAGTGTCTCGCTTTATACAGAGGAAGAAGCGGAG
GCCATGGgtgcggtgggggggcggcagccggaccggtgcccgccgtgatg
gacgtgggacgacgggtacttgttgctggaagACAAGGGCCTGAAGGAAA
AGGACCAGGATGAACAGAAGGAGGAGAGCAGTGGCAACAGTCACGACAAG
GCTGCGGAGGACGCGCGCCTGCGGGAACTGGTGGAAAGCCTGGGGTTGGC
CGAGGCCCTGAACCTGGACGACCTTGAAGGGAGAGGAGGGTACGCGGACC
CGACCTCGCCATTTGCCCAGAAGGCGGTGGCGGCCTACGAGGCATTTGTG
CAGGCTCAGAAGAAAGGCGAGGCGGAGGGAGGGGCGACGTGGCCTCGGCG
GTGGCTGGGATGGGGGAAGTGGTGCTCGACGACCTCGACGGGAGCGGGAA
GGAAGGAGGGGTGA
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protein sequence of NO01G00140.1

>NO01G00140.1-protein ID=NO01G00140.1-protein|Name=NO01G00140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=163bp
MQRHSTSIRGLARDTEKAVLEKFKVDLSRTLEGGRERGVSVSLYTEEEAE
AMDKGLKEKDQDEQKEESSGNSHDKAAEDARLRELVESLGLAEALNLDDL
EGRGGYADPTSPFAQKAVAAYEAFVQAQKKGEAEGGATWPRRWLGWGKWC
STTSTGAGRKEG*
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Synonyms
Publications