NO01G00140.1, NO01G00140.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G00140.1
Unique NameNO01G00140.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length489
Alignment locationchr1:22682..23245 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:22682..23245 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G00140.1 vs.
Match: EWM28943.1 (hypothetical protein Naga_100347g2 [Nannochloropsis gaditana])

HSP 1 Score: 111.7 bits (278), Expect = 2.200e-21
Identity = 86/179 (48.04%), Postives = 100/179 (55.87%), Query Frame = 0 
Query:    1 MQRHSTSIRGLARDTEKAVLEKFKVDLSRTLEG--GRERGVSVSLYTEEEAEAM----------------------DKGLKEKDQDEQKEESSG-------------NSHDKAAEDARLRELVESLGLAEALNLDDL----EG--RGGYADPTSPFAQKAVAAYEAFVQAQKKGEAEGG 137
            MQ+HS SIRGLARDTEK VLEK + DL   L G  G   GV V   T  EAEAM                      DKGL++    E + + SG                DK  EDARLREL+E+LGLAEAL+L++     EG  + G+ADP SPFA+KAVAAYEAFVQAQK   AE G
Sbjct:  223 MQQHSLSIRGLARDTEKTVLEKLESDLVVALRGGEGEGEGVGVEFRTGSEAEAMEGFFEAVPASSEAVDVDDEHLEDKGLRQGPGVEGEGQGSGRQTKSETGPEDRVEKPDKEEEDARLRELIETLGLAEALDLEERGEGGEGGQKNGWADPNSPFAKKAVAAYEAFVQAQKGPGAEQG 401
The following BLAST results are available for this feature:
BLAST of NO01G00140.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28943.12.200e-2148.04hypothetical protein Naga_100347g2 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G00140NO01G00140Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G00140.1NO01G00140.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G00140.1.cds1NO01G00140.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00140.1.cds2NO01G00140.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G00140.1 ID=NO01G00140.1|Name=NO01G00140.1|organism=Nannochloropsis oceanica|type=mRNA|length=489bp
ATGCAGCGGCATTCCACATCCATTCGCGGGCTTGCACGGGATACGGAGAA
GGCGGTCCTGGAGAAGTTTAAGGTAGACTTGTCCCGGACTTTGGAAGGAG
GAAGGGAGCGAGGAGTGAGTGTCTCGCTTTATACAGAGGAAGAAGCGGAG
GCCATGGACAAGGGCCTGAAGGAAAAGGACCAGGATGAACAGAAGGAGGA
GAGCAGTGGCAACAGTCACGACAAGGCTGCGGAGGACGCGCGCCTGCGGG
AACTGGTGGAAAGCCTGGGGTTGGCCGAGGCCCTGAACCTGGACGACCTT
GAAGGGAGAGGAGGGTACGCGGACCCGACCTCGCCATTTGCCCAGAAGGC
GGTGGCGGCCTACGAGGCATTTGTGCAGGCTCAGAAGAAAGGCGAGGCGG
AGGGAGGGGCGACGTGGCCTCGGCGGTGGCTGGGATGGGGGAAGTGGTGC
TCGACGACCTCGACGGGAGCGGGAAGGAAGGAGGGGTGA
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protein sequence of NO01G00140.1

>NO01G00140.1-protein ID=NO01G00140.1-protein|Name=NO01G00140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=163bp
MQRHSTSIRGLARDTEKAVLEKFKVDLSRTLEGGRERGVSVSLYTEEEAE
AMDKGLKEKDQDEQKEESSGNSHDKAAEDARLRELVESLGLAEALNLDDL
EGRGGYADPTSPFAQKAVAAYEAFVQAQKKGEAEGGATWPRRWLGWGKWC
STTSTGAGRKEG*
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mRNA from alignment at chr1:22682..23245-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G00140.1 ID=NO01G00140.1|Name=NO01G00140.1|organism=Nannochloropsis oceanica|type=mRNA|length=564bp|location=Sequence derived from alignment at chr1:22682..23245- (Nannochloropsis oceanica)
ATGCAGCGGCATTCCACATCCATTCGCGGGCTTGCACGGGATACGGAGAA
GGCGGTCCTGGAGAAGTTTAAGGTAGACTTGTCCCGGACTTTGGAAGGAG
GAAGGGAGCGAGGAGTGAGTGTCTCGCTTTATACAGAGGAAGAAGCGGAG
GCCATGGGTGCGGTGGGGGGGCGGCAGCCGGACCGGTGCCCGCCGTGATG
GACGTGGGACGACGGGTACTTGTTGCTGGAAGACAAGGGCCTGAAGGAAA
AGGACCAGGATGAACAGAAGGAGGAGAGCAGTGGCAACAGTCACGACAAG
GCTGCGGAGGACGCGCGCCTGCGGGAACTGGTGGAAAGCCTGGGGTTGGC
CGAGGCCCTGAACCTGGACGACCTTGAAGGGAGAGGAGGGTACGCGGACC
CGACCTCGCCATTTGCCCAGAAGGCGGTGGCGGCCTACGAGGCATTTGTG
CAGGCTCAGAAGAAAGGCGAGGCGGAGGGAGGGGCGACGTGGCCTCGGCG
GTGGCTGGGATGGGGGAAGTGGTGCTCGACGACCTCGACGGGAGCGGGAA
GGAAGGAGGGGTGA
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Coding sequence (CDS) from alignment at chr1:22682..23245-

>NO01G00140.1 ID=NO01G00140.1|Name=NO01G00140.1|organism=Nannochloropsis oceanica|type=CDS|length=489bp|location=Sequence derived from alignment at chr1:22682..23245- (Nannochloropsis oceanica)
ATGCAGCGGCATTCCACATCCATTCGCGGGCTTGCACGGGATACGGAGAA
GGCGGTCCTGGAGAAGTTTAAGGTAGACTTGTCCCGGACTTTGGAAGGAG
GAAGGGAGCGAGGAGTGAGTGTCTCGCTTTATACAGAGGAAGAAGCGGAG
GCCATGGACAAGGGCCTGAAGGAAAAGGACCAGGATGAACAGAAGGAGGA
GAGCAGTGGCAACAGTCACGACAAGGCTGCGGAGGACGCGCGCCTGCGGG
AACTGGTGGAAAGCCTGGGGTTGGCCGAGGCCCTGAACCTGGACGACCTT
GAAGGGAGAGGAGGGTACGCGGACCCGACCTCGCCATTTGCCCAGAAGGC
GGTGGCGGCCTACGAGGCATTTGTGCAGGCTCAGAAGAAAGGCGAGGCGG
AGGGAGGGGCGACGTGGCCTCGGCGGTGGCTGGGATGGGGGAAGTGGTGC
TCGACGACCTCGACGGGAGCGGGAAGGAAGGAGGGGTGA
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Synonyms
Publications