rna9567, rna9567 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9567
Unique Name	rna9567
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2564
Alignment location	KK037254.1:190243..191478 -

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Properties


Property Name	Value
Product	dna-directed rna polymerase iii subunit rpc10
Orig transcript id	gnl\|cribi\|Naga_100041g7.3684.mrna
Orig protein id	gnl\|cribi\|Naga_100041g7.3684
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037254.1	supercontig	KK037254.1:190243..191478 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100041g7	gene9288	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21114.1	cds9536	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9567	rna9567-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037254.1:190243..191478-
coding sequence from alignment at KK037254.1:190243..191478-

mRNA sequence

>rna9567 ID=rna9567|Name=rna9567|organism=Nannochloropsis gaditana|type=mRNA|length=2564bp
GCGTGCATCTCAGGGCTGGAGGCGCGATGAAATCCCAATCGACACAAGAA
GAGCCCTCGCCAGGCTGAGAGAAAGCCGAACATTCATCCGCGGACAAAAC
GGATGCCTTTTCACGCGTTCTACCAACCATTCTCCGCACAAGGCGCAGCA
GGGTGGCGACTAAGTCGAGGAGAAGCTGCTAGATCTGAATATGGCAGCTG
CAGGGACGGCGACGAACGTGGTGTTTGTTGGCAATTTGGCCTGGAGCACG
TCGGAGGAGAGCCTGCGAGCCCTGGCCTCCACGGTTGGACCAGTACTGTC
CGTGCAGATCCAGACTCATGCCGACACTGGCCGCTCAAAGGGATGGGGGT
GAGTCCATCGAGGGTGGAGTGGAGTGGATGGCCGAGGGGAGGGAGGCTGT
TGTATAGCTTGCTCGGGGGGAGGGCCTTCTGTTGTCAGAACCCCGATGCG
CCAAATGGGTGGAGAAGAGCCTGGCGTCAATCAATTTGCACTGCGAGAGG
GACATGGGGAAGATTTAGAGGACTGAGGTTTTAAAAGCAAGGATTTCTCA
CCGCGCTTGAGAAGCCCATGCCGGGTCGACGGATGTGGGTCCTCTCTGCA
CGGGCATTTGCGCACCATTTCATGCACAAGTCTGAAAAAGATCTGCCAAC
TCGGAGCAGGCAGCTCTTGCTTAGGATCACTTCTTCATTCATTCATCTTC
TATGCCACCCCATACCAGCCTCATCCATTACAGTGCCCCGGAGGTCGCCG
CCAAGGCCATCGAGGCCTTGAACGGACAGGAGCTAGACAACAGGAAGCTC
CACGTGCGGGAGGATCGCTCCTATCTGGACTCGGCGGAGGGGGTGGTGGT
CTTCGTAGGGAATCTGCCGTGGTCGGTTACGAGCGAGGCGCTGCAGGAGC
TCTTCAAGGAGTACAACCCGCTGGACGTGCACGTGAAGACGAATATGGCG
GGCCGGAGCAGGGGCTTCGCGTTGGTAAAGTTCACGGACGCCGAGGTGGC
GGGAGTGGCCATCACGAACCTGAACGGCTATCAGTTGGAGGGCAGGCCCA
TCCAGGTCCGGTTCGACCGGCAGCAGGCAGAGGCGGGGGAAGGGGAGGGC
GTGGGCAACGGGGGCCCGGTGGGCGGCCTGACGGACCGGGTGACGCTGAC
AAACCTGGCCTGGACGACGGAGGAGGGGGAGCTAGTGAGCCTGCTCTCCA
AGGCAGGGACGGTGGTGGGCGTAGAGATCCAGCGGCATGCGGACACGGGG
CGAAGCAAGGGGTGGGCGATCGCCACCTTTGCCAGTCGAGACGAGGCCTT
GAACGCGATCAACACTCTGAACAAGACGGTGGTGCGACAGCGACCGATTA
GCATGAAGTTTTACTCGACCACTGGCGGGCGGCGGACCTGAGGGGGTCCC
CCTCTGTCTTCCTACGCTTTCGGCGCCCGTGGTGGGTACGGGAGGGGAGG
GAGGGGGGGGGGGAGATGGGGGGGTTAGAGGCGCCGGGGGAAGGTGGTGA
AAGCTGAGGACGACAACTAGTGCATTCGAGGAAATGAGGGTGAGTTTGGA
AAGAAATCGCTGAAGTTCTAGTGCCTGGCTGCGGTTTCAGAAAAAGGGAG
ACACAGGCGGGGGGGCGGGGAGGGCTGGGTCTGCGAAAACGAGGTGGTCA
CTGCGGTCTCACAATGCTAGTTTGTCGTCGAATGTGACGGCGTTTTGCGG
AGATATGCGACCACAATGGAGCTTTTAGATGGGGGCTTAATGAATTGCGG
GAAGATAGGGCAGGGTCTCGCTGTAGTAGCCGGGACGGTTTTTTTGGGTG
GGGCTAGTGCATTCTGAAAGCGATAATGAAGGAAGAGTAAGGCCGACGAA
GAGAACATTGCGACGAAAAAATCTGCTGAGATGGAGAAAAGAGAGGCAAG
AGGACGGAGATGGCAGACATTGGAGCATGCCAATGAATGACCACGCAGCG
GTGAGACACAGCGGAACGCCGTCGGAGCCGAGGGCTTGAAGATTTGGAAG
GAGATGACGTAGGAGGAGGCGCATCGAATGGCCTCCGCGAAATTGTTTGC
TTAATGCATGTTGCCCTTATCAGCGAACACTTGCTCCCGGGGACGACCGT
GTATAGAGATTGGGCGGGATAGGGACACCTGGAGAAGAGGATCTTATTGC
CAGATGCTAATTCGGAAGCAATGGACTTATCGCACCTTGCTTCATTTTGA
AATGAACTTTTTTCCCCCCCCCGTGTCTTTCGTCACAGCATACCACTTTT
TTAAAGAGATTGATCACCAGCGACGTCCGACTCGAAAAAGCATCAAACTT
TTATCCCCTGACGCTTTTCACACCTTCAAACACCGAAAGGACTCTTAAAT
AGATCGCACCATCCTTGACTGCAATTCTGTTCCTCTGAACTGGAACCAAT
CTTCCGGCGTCGGAAACGTGTTCGGGATGCGCCTCTTCACTCTCCTTCCC
TAGTCGCCGGACCAACGATTCGCGCAGAGCGTGCACCTGTAAAATGTCGT
CATGGGCTCATCTGCGGATCGTATCTGCATTTGCACGAAGAATGCCTCCA
TGCTATCGCAAAAA

protein sequence of rna9567

>rna9567-protein ID=rna9567-protein|Name=rna9567|organism=Nannochloropsis gaditana|type=polypeptide|length=106bp
MKFCPICSNLLLVELGEQNFRFCCQTCPYISVITKKISKTMKLKRKEVDD
VLGGEDAWAAADRTTTACPFCDSMEAFFVQMQIRSADEPMTTFYRCTLCA
NRWSGD

mRNA from alignment at KK037254.1:190243..191478-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9567 ID=rna9567|Name=rna9567|organism=Nannochloropsis gaditana|type=mRNA|length=1236bp|location=Sequence derived from alignment at KK037254.1:190243..191478- (Nannochloropsis gaditana)
ACGTCTACCGCGAGCTCAACATTGACGTTGGCATTCGCCACAGCATGTTG
CATACAGCTAATACTGGTAAATATTTTTTTCATCCGTTCGTGATACAGAG
CGTCTAAAAAAGTCGGTCCGGTCCAAGGCGTATCTTCGACCTCGCCTCAC
CGCTTGCCTCTGTTTTCCAGTTTCGTAAACGTTCATAGCGGCCCTACTTA
CTACAAATGCGTTCTTTGGTGCGACTCTTTTGAGGAAATGCAGAGTTAGT
AGCATTGATTTTAATGCTGCCATCCTCGTGTCGTGGGCGTGCAGTGTCCT
TGAGGATTCTCGGTGTTAAATCTTAAGACATCTCCAACATTACCTTTCAA
GTCCCTGTATCGCACTTGCGGCGCTTTTGATAACCAACGTCTGCCACTGC
TTTGCCACTCGAGTGTTCGACCTGCTCTTCTTCTTCTATCAAGCTTCGTA
TATTTTTTTCGGTGACGGCTTCGACTTCTTTGAGCGATTCGACACCCTGC
AGCCCTTCGAGTCCATGAAGTTCTGTCCTATATGTTCCAATCTACTCCTA
GTCGAACTCGGAGAGCAGAACTTCCGATTTTGTTGTCAGACGTGCCCCTA
TATATCAGTCATTACGAAAAAGATTAGCAAAACGATGAAGCTTAAACGAA
AAGAAGTGGACGATGTCCTCGGTGGGGAGGACGCATGGGCGGCAGCCGAT
CGAACGACCACCGCATGCCCTTTTTGCGATAGCATGGAGGCATTCTTCGT
GCAAATGCAGATACGATCCGCAGATGAGCCCATGACGACATTTTACAGGT
GCACGCTCTGCGCGAATCGTTGGTCCGGCGACTAGGGAAGGAGAGTGAAG
AGGCGCATCCCGAACACGTTTCCGACGCCGGAAGATTGGTTCCAGTTCAG
AGGAACAGAATTGCAGTCAAGGATGGTGCGATCTATTTAAGAGTCCTTTC
GGTGTTTGAAGGTGTGAAAAGCGTCAGGGGATAAAAGTTTGATGCTTTTT
CGAGTCGGACGTCGCTGGTGATCAATCTCTTTAAAAAAGTGGTATGCTGT
GACGAAAGACACGGGGGGGGGAAAAAAGTTCATTTCAAAATGAAGCAAGG
TGCGATAAGTCCATTGCTTCCGAATTAGCATCTGGCAATAAGATCCTCTT
CTCCAGGTGTCCCTATCCCGCCCAATCTCTATACACGGTCGTCCCCGGGA
GCAAGTGTTCGCTGATAAGGGCAACATGCATTAAGC

Coding sequence (CDS) from alignment at KK037254.1:190243..191478-

>rna9567 ID=rna9567|Name=rna9567|organism=Nannochloropsis gaditana|type=CDS|length=321bp|location=Sequence derived from alignment at KK037254.1:190243..191478- (Nannochloropsis gaditana)
ATGAAGTTCTGTCCTATATGTTCCAATCTACTCCTAGTCGAACTCGGAGA
GCAGAACTTCCGATTTTGTTGTCAGACGTGCCCCTATATATCAGTCATTA
CGAAAAAGATTAGCAAAACGATGAAGCTTAAACGAAAAGAAGTGGACGAT
GTCCTCGGTGGGGAGGACGCATGGGCGGCAGCCGATCGAACGACCACCGC
ATGCCCTTTTTGCGATAGCATGGAGGCATTCTTCGTGCAAATGCAGATAC
GATCCGCAGATGAGCCCATGACGACATTTTACAGGTGCACGCTCTGCGCG
AATCGTTGGTCCGGCGACTAG

Synonyms

Publications