Naga_100041g7, gene9288 (gene) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	Naga_100041g7
Unique Name	gene9288
Type	gene
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	KK037254.1:190243..191478 -

Link to JBrowse

Properties


Property Name	Value
Locus tag	Naga_100041g7
Gene biotype	protein_coding
Gbkey	Gene

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037254.1	supercontig	KK037254.1:190243..191478 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
SRP229557	2021-06-30
GO annotation for N. gaditana B31	2020-04-08
PRJNA174770	2019-07-03
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0016740	transferase activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0005730	nucleolus

Vocabulary: **Biological Process**
Term	Definition
GO:0009058	biosynthetic process
GO:0006139	nucleobase-containing compound metabolic process

Homology

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
ngnoL085	ngnoL085	Nannochloropsis gaditana (N. gaditana B-31)	syntenic_region
ngnoL084	ngnoL084	Nannochloropsis gaditana (N. gaditana B-31)	syntenic_region
ngnoL082	ngnoL082	Nannochloropsis gaditana (N. gaditana B-31)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO17G00910	NO17G00910	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
rna9567	rna9567-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
rna9567	rna9567	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

The following sequences are available for this feature:

protein sequence

protein sequence of rna9567

>rna9567-protein ID=rna9567-protein|Name=rna9567|organism=Nannochloropsis gaditana|type=polypeptide|length=106bp
MKFCPICSNLLLVELGEQNFRFCCQTCPYISVITKKISKTMKLKRKEVDD
VLGGEDAWAAADRTTTACPFCDSMEAFFVQMQIRSADEPMTTFYRCTLCA
NRWSGD

Synonyms

Publications