NO17G00910, NO17G00910 (gene) Nannochloropsis oceanica

Overview
NameNO17G00910
Unique NameNO17G00910
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length321
Alignment locationchr17:297789..298109 -

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Properties
Property NameValue
DescriptionDNA-directed RNA polymerase subunit
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:297789..298109 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006351transcription, DNA-templated
GO:0009058biosynthetic process
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0003676nucleic acid binding
GO:0016740transferase activity
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR001529DNA-dir_RNA_pol_M/15kDasu
IPR001222Znf_TFIIS
Vocabulary: Cellular Component
TermDefinition
GO:0005730nucleolus
Homology
[Close]
BLAST of NO17G00910 vs. NCBI_GenBank
Match: XP_005854618.1 (DNA-directed RNA polymerase III subunit RPC10 [Nannochloropsis gaditana CCMP526] >EKU21742.1 DNA-directed RNA polymerase III subunit RPC10 [Nannochloropsis gaditana CCMP526] >EWM21114.1 dna-directed rna polymerase iii subunit rpc10 [Nannochloropsis gaditana])

HSP 1 Score: 215.3 bits (547), Expect = 9.100e-53
Identity = 99/106 (93.40%), Postives = 103/106 (97.17%), Query Frame = 0 
Query:    1 MKFCPICSNLLLVELGEISFRFCCQTCPYISSITKKISKTMKLKRKEVDDVLGGEDAWAAANRTTAACPYCDNMEAFFVQMQIRSADEPMTTFYRCTLCANRWSGD 107
            MKFCPICSNLLLVELGE +FRFCCQTCPYIS ITKKISKTMKLKRKEVDDVLGGEDAWAAA+RTT ACP+CD+MEAFFVQMQIRSADEPMTTFYRCTLCANRWSGD
Sbjct:    1 MKFCPICSNLLLVELGEQNFRFCCQTCPYISVITKKISKTMKLKRKEVDDVLGGEDAWAAADRTTTACPFCDSMEAFFVQMQIRSADEPMTTFYRCTLCANRWSGD 106
[Close]
BLAST of NO17G00910 vs. NCBI_GenBank
Match: XP_008615165.1 (DNA-directed RNA polymerase III subunit RPC10 [Saprolegnia diclina VS20] >XP_012196111.1 hypothetical protein SPRG_02170 [Saprolegnia parasitica CBS 223.65] >EQC31324.1 DNA-directed RNA polymerase III subunit RPC10 [Saprolegnia diclina VS20] >KDO33363.1 hypothetical protein SPRG_02170 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 141.0 bits (354), Expect = 2.200e-30
Identity = 58/104 (55.77%), Postives = 78/104 (75.00%), Query Frame = 0 
Query:    1 MKFCPICSNLLLVELGEISFRFCCQTCPYISSITKKISKTMKLKRKEVDDVLGGEDAWAAANRTTAACPYCDNMEAFFVQMQIRSADEPMTTFYRCTLCANRWS 105
            M FCP C NLL+VE      RFCCQTCPYI  IT+K+ K + L+RK+VDDVLGG++AW   ++T   CP+C++ +A+F+Q+QIRSADEP TTFY+C  C  +W+
Sbjct:    1 MHFCPTCGNLLMVEPDSDGMRFCCQTCPYIYQITRKVQKKVPLQRKQVDDVLGGDEAWENVDQTDTRCPFCEHHKAYFMQIQIRSADEPSTTFYKCVGCKKQWN 104
[Close]
BLAST of NO17G00910 vs. NCBI_GenBank
Match: OQR92793.1 (DNA-directed RNA polymerases III 12.5 kDa polypeptide [Achlya hypogyna])

HSP 1 Score: 141.0 bits (354), Expect = 2.200e-30
Identity = 58/104 (55.77%), Postives = 78/104 (75.00%), Query Frame = 0 
Query:    1 MKFCPICSNLLLVELGEISFRFCCQTCPYISSITKKISKTMKLKRKEVDDVLGGEDAWAAANRTTAACPYCDNMEAFFVQMQIRSADEPMTTFYRCTLCANRWS 105
            M FCP C NLL+VE      RFCCQTCPYI  IT+K+ K + L+RK+VDDVLGG++AW   ++T   CP+C++ +A+F+Q+QIRSADEP TTFY+C  C  +W+
Sbjct:    1 MHFCPTCGNLLMVEPDSDGMRFCCQTCPYIYQITRKVQKKVPLQRKQVDDVLGGDEAWENVDQTDTRCPFCEHNKAYFMQIQIRSADEPSTTFYKCVGCKKQWN 104
[Close]
BLAST of NO17G00910 vs. NCBI_GenBank
Match: OQS07450.1 (DNA-directed RNA polymerases III 12.5 kDa polypeptide [Thraustotheca clavata])

HSP 1 Score: 139.0 bits (349), Expect = 8.300e-30
Identity = 57/104 (54.81%), Postives = 77/104 (74.04%), Query Frame = 0 
Query:    1 MKFCPICSNLLLVELGEISFRFCCQTCPYISSITKKISKTMKLKRKEVDDVLGGEDAWAAANRTTAACPYCDNMEAFFVQMQIRSADEPMTTFYRCTLCANRWS 105
            M FCP C NLL+VE      RFCCQTCPYI  I +K+ K + L+RK+VDDVLGG++AW   ++T   CP+C++ +A+F+Q+QIRSADEP TTFY+C  C  +W+
Sbjct:    1 MHFCPTCGNLLMVEPDSDGMRFCCQTCPYIYQINRKVQKKVPLQRKQVDDVLGGDEAWENVDQTDTRCPFCEHNKAYFMQIQIRSADEPSTTFYKCVGCKKQWN 104
[Close]
BLAST of NO17G00910 vs. NCBI_GenBank
Match: XP_009820978.1 (transcription factor S [Aphanomyces astaci] >ETV88578.1 transcription factor S [Aphanomyces astaci])

HSP 1 Score: 138.3 bits (347), Expect = 1.400e-29
Identity = 57/104 (54.81%), Postives = 77/104 (74.04%), Query Frame = 0 
Query:    1 MKFCPICSNLLLVELGEISFRFCCQTCPYISSITKKISKTMKLKRKEVDDVLGGEDAWAAANRTTAACPYCDNMEAFFVQMQIRSADEPMTTFYRCTLCANRWS 105
            M FCP C NLL+VE      RFCCQTCPYI  I +K+   + L+RK+VDDVLGG++AW   ++T   CP+C++ +A+F+Q+QIRSADEP TTFY+CT C  +W+
Sbjct:    1 MHFCPTCGNLLMVEPDSDGMRFCCQTCPYIFKINQKVETKVPLQRKKVDDVLGGDEAWENVDQTDTRCPFCEHTKAYFMQIQIRSADEPSTTFYKCTGCKKQWN 104
[Close]
BLAST of NO17G00910 vs. NCBI_GenBank
Match: XP_008862997.1 (transcription factor S [Aphanomyces invadans] >ETW09192.1 transcription factor S [Aphanomyces invadans])

HSP 1 Score: 138.3 bits (347), Expect = 1.400e-29
Identity = 57/104 (54.81%), Postives = 77/104 (74.04%), Query Frame = 0 
Query:    1 MKFCPICSNLLLVELGEISFRFCCQTCPYISSITKKISKTMKLKRKEVDDVLGGEDAWAAANRTTAACPYCDNMEAFFVQMQIRSADEPMTTFYRCTLCANRWS 105
            M FCP C NLL+VE      RFCCQTCPYI  I +K+   + L+RK+VDDVLGG++AW   ++T   CP+C++ +A+F+Q+QIRSADEP TTFY+CT C  +W+
Sbjct:    1 MHFCPTCGNLLMVEPDSDGMRFCCQTCPYIYKINQKVETKVPLQRKKVDDVLGGDEAWENVDQTDTRCPFCEHTKAYFMQIQIRSADEPSTTFYKCTGCKKQWN 104
[Close]
BLAST of NO17G00910 vs. NCBI_GenBank
Match: CDW74015.1 (rna polymerase iii smallest subunit [Stylonychia lemnae])

HSP 1 Score: 137.5 bits (345), Expect = 2.400e-29
Identity = 58/103 (56.31%), Postives = 77/103 (74.76%), Query Frame = 0 
Query:    1 MKFCPICSNLLLVELGEISFRFCCQTCPYISSITKKISKTMKLKRKEVDDVLGGEDAWAAANRTTAACPYCDNMEAFFVQMQIRSADEPMTTFYRCTLCANRW 104
            M FCP C+NLLL+E     FRF C+TCPY+  + +   K M+L+RKEVDDVLGG++AW   ++  A CP C+N  A+F+Q+QIRSADEPMTTFY+CT C+ +W
Sbjct:    1 MLFCPTCANLLLIEKTHSDFRFFCKTCPYVFVVEQNFEKKMQLERKEVDDVLGGKEAWENVDQIEAQCPKCNNKRAYFMQIQIRSADEPMTTFYKCTQCSYQW 103
[Close]
BLAST of NO17G00910 vs. NCBI_GenBank
Match: ESK93916.1 (dna-directed rna polymerases iii kda polypeptide [Moniliophthora roreri MCA 2997])

HSP 1 Score: 136.0 bits (341), Expect = 7.000e-29
Identity = 60/103 (58.25%), Postives = 77/103 (74.76%), Query Frame = 0 
Query:    1 MKFCPICSNLLLVELGEISFRFCCQTCPYISSITKKISKTMKLKRKEVDDVLGGEDAWAAANRTTAACPYCDNMEAFFVQMQIRSADEPMTTFYRCTLCANRW 104
            M FCP C+NLL++       ++ C TCPY   ITK+++   KLKRKEVDDVLGGE+ W  A+ T A+CP C+N +A+F Q+QIRSADEPMTTFYRCT CA++W
Sbjct:    2 MLFCPTCANLLVISSETGLNKWACNTCPYEFPITKQMTSRTKLKRKEVDDVLGGEEMWKHADSTAASCPKCNNGQAYFYQLQIRSADEPMTTFYRCTACAHQW 104
[Close]
BLAST of NO17G00910 vs. NCBI_GenBank
Match: XP_009493392.1 (DNA-directed RNA polymerase III subunit RPC10 [Fonticula alba] >KCV71814.1 DNA-directed RNA polymerase III subunit RPC10 [Fonticula alba])

HSP 1 Score: 135.2 bits (339), Expect = 1.200e-28
Identity = 63/108 (58.33%), Postives = 79/108 (73.15%), Query Frame = 0 
Query:    1 MKFCPICSNLLLV-----ELGEISFRFCCQTCPYISSITKKISKTMKLKRKEVDDVLGGEDAWAAANRTTAACPYCDNMEAFFVQMQIRSADEPMTTFYRCTLCANRW 104
            M FCP C N+LLV     ++G+  F+F CQTCPY+ SI +KIS  + LKRKEVDDVLGGE +W   + T   CP CDN  A+F+Q+QIRSADEPM+TFY+CT CA +W
Sbjct:    1 MLFCPGCGNVLLVNSDASDIGD--FQFACQTCPYVHSIKRKISSRIILKRKEVDDVLGGEGSWDNVDSTEVPCPKCDNRRAYFMQIQIRSADEPMSTFYKCTKCAAQW 106
[Close]
BLAST of NO17G00910 vs. NCBI_GenBank
Match: XP_007363842.1 (hypothetical protein DICSQDRAFT_102442 [Dichomitus squalens LYAD-421 SS1] >EJF63290.1 hypothetical protein DICSQDRAFT_102442 [Dichomitus squalens LYAD-421 SS1])

HSP 1 Score: 134.8 bits (338), Expect = 1.600e-28
Identity = 61/103 (59.22%), Postives = 72/103 (69.90%), Query Frame = 0 
Query:    1 MKFCPICSNLLLVELGEISFRFCCQTCPYISSITKKISKTMKLKRKEVDDVLGGEDAWAAANRTTAACPYCDNMEAFFVQMQIRSADEPMTTFYRCTLCANRW 104
            M FCP C+NLL++       ++ C TC Y   ITK+++   KLKRKEVDDVLGGED W  A+ T A CP CDN  A+F Q+QIRSADEPMTTFYRCT C N W
Sbjct:    1 MLFCPNCANLLVISAETGYNKWACNTCAYEFPITKQMTSRTKLKRKEVDDVLGGEDQWKHADSTNATCPKCDNGRAYFYQLQIRSADEPMTTFYRCTACGNNW 103
The following BLAST results are available for this feature:
BLAST of NO17G00910 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005854618.19.100e-5393.40DNA-directed RNA polymerase III subunit RPC10 [Nan... [more]
XP_008615165.12.200e-3055.77DNA-directed RNA polymerase III subunit RPC10 [Sap... [more]
OQR92793.12.200e-3055.77DNA-directed RNA polymerases III 12.5 kDa polypept... [more]
OQS07450.18.300e-3054.81DNA-directed RNA polymerases III 12.5 kDa polypept... [more]
XP_009820978.11.400e-2954.81transcription factor S [Aphanomyces astaci] >ETV88... [more]
XP_008862997.11.400e-2954.81transcription factor S [Aphanomyces invadans] >ETW... [more]
CDW74015.12.400e-2956.31rna polymerase iii smallest subunit [Stylonychia l... [more]
ESK93916.17.000e-2958.25dna-directed rna polymerases iii kda polypeptide [... [more]
XP_009493392.11.200e-2858.33DNA-directed RNA polymerase III subunit RPC10 [Fon... [more]
XP_007363842.11.600e-2859.22hypothetical protein DICSQDRAFT_102442 [Dichomitus... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL158nonsL158Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL156nonsL156Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR035ncniR035Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR085ngnoR085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR084ngnoR084Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR028ngnoR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004812NSK004812Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO17G00910.1NO17G00910.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100041g7gene9288Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO17G00910.1NO17G00910.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO17G00910 ID=NO17G00910|Name=NO17G00910|organism=Nannochloropsis oceanica|type=gene|length=321bp
ATGAAGTTCTGCCCCATCTGCTCCAATCTATTGCTTGTGGAGCTCGGGGA
GATCAGCTTTCGATTTTGCTGCCAGACCTGCCCCTACATTTCGTCTATCA
CCAAGAAAATCAGTAAGACCATGAAGCTGAAGCGGAAAGAGGTGGATGAT
GTCCTCGGTGGGGAAGATGCTTGGGCAGCCGCGAATCGTACCACCGCAGC
TTGCCCGTATTGTGACAACATGGAGGCATTCTTCGTCCAGATGCAAATTC
GGTCGGCGGATGAGCCCATGACGACATTTTATAGATGCACGCTCTGTGCC
AACAGGTGGTCGGGCGACTAA
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protein sequence of NO17G00910.1

>NO17G00910.1-protein ID=NO17G00910.1-protein|Name=NO17G00910.1|organism=Nannochloropsis oceanica|type=polypeptide|length=107bp
MKFCPICSNLLLVELGEISFRFCCQTCPYISSITKKISKTMKLKRKEVDD
VLGGEDAWAAANRTTAACPYCDNMEAFFVQMQIRSADEPMTTFYRCTLCA
NRWSGD*
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Synonyms
Publications