EWM21114.1, cds9536 (CDS) Nannochloropsis gaditana

Overview
NameEWM21114.1
Unique Namecds9536
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037254.1:190644..190964 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21114.1
Productdna-directed rna polymerase iii subunit rpc10
Orig transcript idgnl|cribi|Naga_100041g7.3684.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037254.1supercontigKK037254.1:190644..190964 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0006351transcription, DNA-templated
Vocabulary: Cellular Component
TermDefinition
GO:0005730nucleolus
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0003676nucleic acid binding
GO:0008270zinc ion binding
GO:0003899DNA-directed 5'-3' RNA polymerase activity
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR012164DNA-dir_RNApol_C11
IPR001222Znf_TFIIS
IPR001529DNA-dir_RNA_pol_M/15kDasu
Homology
BLAST of EWM21114.1 vs. NCBI_GenBank
Match: gi|553187474|ref|XP_005854618.1| (DNA-directed RNA polymerase III subunit RPC10 [Nannochloropsis gaditana CCMP526] >gi|422294442|gb|EKU21742.1| DNA-directed RNA polymerase III subunit RPC10 [Nannochloropsis gaditana CCMP526] >gi|585101181|gb|EWM21114.1| dna-directed rna polymerase iii subunit rpc10 [Nannochloropsis gaditana])

HSP 1 Score: 222.246 bits (565), Expect = 1.183e-73
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0
Query:    1 MKFCPICSNLLLVELGEQNFRFCCQTCPYISVITKKISKTMKLKRKEVDDVLGGEDAWAAADRTTTACPFCDSMEAFFVQMQIRSADEPMTTFYRCTLCANRWSGD 106
            MKFCPICSNLLLVELGEQNFRFCCQTCPYISVITKKISKTMKLKRKEVDDVLGGEDAWAAADRTTTACPFCDSMEAFFVQMQIRSADEPMTTFYRCTLCANRWSGD
Sbjct:    1 MKFCPICSNLLLVELGEQNFRFCCQTCPYISVITKKISKTMKLKRKEVDDVLGGEDAWAAADRTTTACPFCDSMEAFFVQMQIRSADEPMTTFYRCTLCANRWSGD 106          
BLAST of EWM21114.1 vs. NCBI_GenBank
Match: gi|669159206|ref|XP_008615165.1| (DNA-directed RNA polymerase III subunit RPC10 [Saprolegnia diclina VS20] >gi|813118946|ref|XP_012196111.1| hypothetical protein SPRG_02170 [Saprolegnia parasitica CBS 223.65] >gi|530733082|gb|EQC31324.1| DNA-directed RNA polymerase III subunit RPC10 [Saprolegnia diclina VS20] >gi|641539554|gb|KDO33363.1| hypothetical protein SPRG_02170 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 142.124 bits (357), Expect = 6.275e-42
Identity = 61/104 (58.65%), Postives = 78/104 (75.00%), Query Frame = 0
Query:    1 MKFCPICSNLLLVELGEQNFRFCCQTCPYISVITKKISKTMKLKRKEVDDVLGGEDAWAAADRTTTACPFCDSMEAFFVQMQIRSADEPMTTFYRCTLCANRWS 104
            M FCP C NLL+VE      RFCCQTCPYI  IT+K+ K + L+RK+VDDVLGG++AW   D+T T CPFC+  +A+F+Q+QIRSADEP TTFY+C  C  +W+
Sbjct:    1 MHFCPTCGNLLMVEPDSDGMRFCCQTCPYIYQITRKVQKKVPLQRKQVDDVLGGDEAWENVDQTDTRCPFCEHHKAYFMQIQIRSADEPSTTFYKCVGCKKQWN 104          
BLAST of EWM21114.1 vs. NCBI_GenBank
Match: gi|1173944008|gb|OQR92793.1| (DNA-directed RNA polymerases III 12.5 kDa polypeptide [Achlya hypogyna])

HSP 1 Score: 141.354 bits (355), Expect = 1.322e-41
Identity = 61/104 (58.65%), Postives = 78/104 (75.00%), Query Frame = 0
Query:    1 MKFCPICSNLLLVELGEQNFRFCCQTCPYISVITKKISKTMKLKRKEVDDVLGGEDAWAAADRTTTACPFCDSMEAFFVQMQIRSADEPMTTFYRCTLCANRWS 104
            M FCP C NLL+VE      RFCCQTCPYI  IT+K+ K + L+RK+VDDVLGG++AW   D+T T CPFC+  +A+F+Q+QIRSADEP TTFY+C  C  +W+
Sbjct:    1 MHFCPTCGNLLMVEPDSDGMRFCCQTCPYIYQITRKVQKKVPLQRKQVDDVLGGDEAWENVDQTDTRCPFCEHNKAYFMQIQIRSADEPSTTFYKCVGCKKQWN 104          
BLAST of EWM21114.1 vs. NCBI_GenBank
Match: gi|1173961418|gb|OQS07450.1| (DNA-directed RNA polymerases III 12.5 kDa polypeptide [Thraustotheca clavata])

HSP 1 Score: 140.198 bits (352), Expect = 4.768e-41
Identity = 60/104 (57.69%), Postives = 77/104 (74.04%), Query Frame = 0
Query:    1 MKFCPICSNLLLVELGEQNFRFCCQTCPYISVITKKISKTMKLKRKEVDDVLGGEDAWAAADRTTTACPFCDSMEAFFVQMQIRSADEPMTTFYRCTLCANRWS 104
            M FCP C NLL+VE      RFCCQTCPYI  I +K+ K + L+RK+VDDVLGG++AW   D+T T CPFC+  +A+F+Q+QIRSADEP TTFY+C  C  +W+
Sbjct:    1 MHFCPTCGNLLMVEPDSDGMRFCCQTCPYIYQINRKVQKKVPLQRKQVDDVLGGDEAWENVDQTDTRCPFCEHNKAYFMQIQIRSADEPSTTFYKCVGCKKQWN 104          
BLAST of EWM21114.1 vs. NCBI_GenBank
Match: gi|673018072|ref|XP_008862997.1| (transcription factor S [Aphanomyces invadans] >gi|574482200|gb|ETW09192.1| transcription factor S [Aphanomyces invadans])

HSP 1 Score: 139.043 bits (349), Expect = 1.279e-40
Identity = 60/104 (57.69%), Postives = 77/104 (74.04%), Query Frame = 0
Query:    1 MKFCPICSNLLLVELGEQNFRFCCQTCPYISVITKKISKTMKLKRKEVDDVLGGEDAWAAADRTTTACPFCDSMEAFFVQMQIRSADEPMTTFYRCTLCANRWS 104
            M FCP C NLL+VE      RFCCQTCPYI  I +K+   + L+RK+VDDVLGG++AW   D+T T CPFC+  +A+F+Q+QIRSADEP TTFY+CT C  +W+
Sbjct:    1 MHFCPTCGNLLMVEPDSDGMRFCCQTCPYIYKINQKVETKVPLQRKKVDDVLGGDEAWENVDQTDTRCPFCEHTKAYFMQIQIRSADEPSTTFYKCTGCKKQWN 104          
BLAST of EWM21114.1 vs. NCBI_GenBank
Match: gi|698775868|ref|XP_009820978.1| (transcription factor S [Aphanomyces astaci] >gi|574123103|gb|ETV88578.1| transcription factor S [Aphanomyces astaci])

HSP 1 Score: 138.272 bits (347), Expect = 2.551e-40
Identity = 60/104 (57.69%), Postives = 77/104 (74.04%), Query Frame = 0
Query:    1 MKFCPICSNLLLVELGEQNFRFCCQTCPYISVITKKISKTMKLKRKEVDDVLGGEDAWAAADRTTTACPFCDSMEAFFVQMQIRSADEPMTTFYRCTLCANRWS 104
            M FCP C NLL+VE      RFCCQTCPYI  I +K+   + L+RK+VDDVLGG++AW   D+T T CPFC+  +A+F+Q+QIRSADEP TTFY+CT C  +W+
Sbjct:    1 MHFCPTCGNLLMVEPDSDGMRFCCQTCPYIFKINQKVETKVPLQRKKVDDVLGGDEAWENVDQTDTRCPFCEHTKAYFMQIQIRSADEPSTTFYKCTGCKKQWN 104          
BLAST of EWM21114.1 vs. NCBI_GenBank
Match: gi|678340292|emb|CDW74015.1| (rna polymerase iii smallest subunit [Stylonychia lemnae])

HSP 1 Score: 135.961 bits (341), Expect = 1.717e-39
Identity = 58/106 (54.72%), Postives = 79/106 (74.53%), Query Frame = 0
Query:    1 MKFCPICSNLLLVELGEQNFRFCCQTCPYISVITKKISKTMKLKRKEVDDVLGGEDAWAAADRTTTACPFCDSMEAFFVQMQIRSADEPMTTFYRCTLCANRWSGD 106
            M FCP C+NLLL+E    +FRF C+TCPY+ V+ +   K M+L+RKEVDDVLGG++AW   D+    CP C++  A+F+Q+QIRSADEPMTTFY+CT C+ +W  +
Sbjct:    1 MLFCPTCANLLLIEKTHSDFRFFCKTCPYVFVVEQNFEKKMQLERKEVDDVLGGKEAWENVDQIEAQCPKCNNKRAYFMQIQIRSADEPMTTFYKCTQCSYQWREN 106          
BLAST of EWM21114.1 vs. NCBI_GenBank
Match: gi|325187761|emb|CCA22306.1| (DNAdirected RNA polymerases III 12.5 kDa polypeptide putative [Albugo laibachii Nc14])

HSP 1 Score: 133.65 bits (335), Expect = 1.293e-38
Identity = 57/104 (54.81%), Postives = 75/104 (72.12%), Query Frame = 0
Query:    1 MKFCPICSNLLLVELGEQNFRFCCQTCPYISVITKKISKTMKLKRKEVDDVLGGEDAWAAADRTTTACPFCDSMEAFFVQMQIRSADEPMTTFYRCTLCANRWS 104
            M FCP C+NLLLVE   +  RF CQTCPY+  I  +I K ++L+RK+VDDVLGG++AW   D+T   CP C+   A+F+Q+QIRSADEP TTFY+C  C  +W+
Sbjct:    1 MHFCPSCANLLLVEPNSEGMRFFCQTCPYLYQIESRIEKHVQLQRKQVDDVLGGDEAWDNVDQTEVRCPHCEHNHAYFMQIQIRSADEPSTTFYKCVQCKKQWN 104          
BLAST of EWM21114.1 vs. NCBI_GenBank
Match: gi|403352044|gb|EJY75527.1| (DNA-directed RNA polymerase subunit (macronuclear) [Oxytricha trifallax])

HSP 1 Score: 131.724 bits (330), Expect = 7.953e-38
Identity = 57/106 (53.77%), Postives = 77/106 (72.64%), Query Frame = 0
Query:    1 MKFCPICSNLLLVELGEQNFRFCCQTCPYISVITKKISKTMKLKRKEVDDVLGGEDAWAAADRTTTACPFCDSMEAFFVQMQIRSADEPMTTFYRCTLCANRWSGD 106
            M FCP C+NLLL+E    +FRF C+TCPY+ V+ +   K M+L+RKEVDDVLGG++AW   D+    C  C +  A+F+Q+QIRSADEPMTTFY+CT C+ +W  +
Sbjct:    1 MLFCPTCANLLLIEKTHNDFRFFCKTCPYVFVVEQNFEKKMQLERKEVDDVLGGKEAWENVDQIEAECHKCGNRRAYFMQIQIRSADEPMTTFYKCTKCSYQWREN 106          
BLAST of EWM21114.1 vs. NCBI_GenBank
Match: gi|675177815|ref|XP_008897792.1| (transcription factor S [Phytophthora parasitica INRA-310] >gi|566009851|gb|ETI32762.1| transcription factor S [Phytophthora parasitica P1569] >gi|567947319|gb|ETK73103.1| transcription factor S [Phytophthora parasitica] >gi|567976014|gb|ETL26543.1| transcription factor S [Phytophthora parasitica] >gi|568005471|gb|ETL79767.1| transcription factor S [Phytophthora parasitica] >gi|568035361|gb|ETM33006.1| transcription factor S [Phytophthora parasitica] >gi|568101973|gb|ETN16655.1| transcription factor S [Phytophthora parasitica INRA-310] >gi|570313551|gb|ETO61499.1| transcription factor S [Phytophthora parasitica P1976] >gi|570937327|gb|ETP02584.1| transcription factor S [Phytophthora parasitica CJ01A1] >gi|570967639|gb|ETP30758.1| transcription factor S [Phytophthora parasitica P10297] >gi|1214674272|gb|OWY96623.1| Transcription factor S [Phytophthora megakarya])

HSP 1 Score: 131.724 bits (330), Expect = 1.049e-37
Identity = 57/104 (54.81%), Postives = 75/104 (72.12%), Query Frame = 0
Query:    1 MKFCPICSNLLLVELGEQNFRFCCQTCPYISVITKKISKTMKLKRKEVDDVLGGEDAWAAADRTTTACPFCDSMEAFFVQMQIRSADEPMTTFYRCTLCANRWS 104
            M FCP C N+LLVE      RF CQTCPY+  I +K+ K + L+RK+VDDVLGG++AW   D+T T CP C+  +A+F+Q+QIRSADEP TTFY+C  C  +W+
Sbjct:    1 MHFCPSCGNILLVEPDSDGMRFFCQTCPYLFQINEKVEKKVPLQRKQVDDVLGGDEAWENVDQTETRCPHCEYNKAYFMQIQIRSADEPSTTFYKCVQCKKQWN 104          
The following BLAST results are available for this feature:
BLAST of EWM21114.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|553187474|ref|XP_005854618.1|1.183e-73100.00DNA-directed RNA polymerase III subunit RPC10 [Nan... [more]
gi|669159206|ref|XP_008615165.1|6.275e-4258.65DNA-directed RNA polymerase III subunit RPC10 [Sap... [more]
gi|1173944008|gb|OQR92793.1|1.322e-4158.65DNA-directed RNA polymerases III 12.5 kDa polypept... [more]
gi|1173961418|gb|OQS07450.1|4.768e-4157.69DNA-directed RNA polymerases III 12.5 kDa polypept... [more]
gi|673018072|ref|XP_008862997.1|1.279e-4057.69transcription factor S [Aphanomyces invadans] >gi|... [more]
gi|698775868|ref|XP_009820978.1|2.551e-4057.69transcription factor S [Aphanomyces astaci] >gi|57... [more]
gi|678340292|emb|CDW74015.1|1.717e-3954.72rna polymerase iii smallest subunit [Stylonychia l... [more]
gi|325187761|emb|CCA22306.1|1.293e-3854.81DNAdirected RNA polymerases III 12.5 kDa polypepti... [more]
gi|403352044|gb|EJY75527.1|7.953e-3853.77DNA-directed RNA polymerase subunit (macronuclear)... [more]
gi|675177815|ref|XP_008897792.1|1.049e-3754.81transcription factor S [Phytophthora parasitica IN... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9567rna9567Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications