EWM21114.1, cds9536 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21114.1 vs. NCBI_GenBank
Match: gi|553187474|ref|XP_005854618.1| (DNA-directed RNA polymerase III subunit RPC10 [Nannochloropsis gaditana CCMP526] >gi|422294442|gb|EKU21742.1| DNA-directed RNA polymerase III subunit RPC10 [Nannochloropsis gaditana CCMP526] >gi|585101181|gb|EWM21114.1| dna-directed rna polymerase iii subunit rpc10 [Nannochloropsis gaditana]) HSP 1 Score: 222.246 bits (565), Expect = 1.183e-73 Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0 Query: 1 MKFCPICSNLLLVELGEQNFRFCCQTCPYISVITKKISKTMKLKRKEVDDVLGGEDAWAAADRTTTACPFCDSMEAFFVQMQIRSADEPMTTFYRCTLCANRWSGD 106 MKFCPICSNLLLVELGEQNFRFCCQTCPYISVITKKISKTMKLKRKEVDDVLGGEDAWAAADRTTTACPFCDSMEAFFVQMQIRSADEPMTTFYRCTLCANRWSGD Sbjct: 1 MKFCPICSNLLLVELGEQNFRFCCQTCPYISVITKKISKTMKLKRKEVDDVLGGEDAWAAADRTTTACPFCDSMEAFFVQMQIRSADEPMTTFYRCTLCANRWSGD 106
BLAST of EWM21114.1 vs. NCBI_GenBank
Match: gi|669159206|ref|XP_008615165.1| (DNA-directed RNA polymerase III subunit RPC10 [Saprolegnia diclina VS20] >gi|813118946|ref|XP_012196111.1| hypothetical protein SPRG_02170 [Saprolegnia parasitica CBS 223.65] >gi|530733082|gb|EQC31324.1| DNA-directed RNA polymerase III subunit RPC10 [Saprolegnia diclina VS20] >gi|641539554|gb|KDO33363.1| hypothetical protein SPRG_02170 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 142.124 bits (357), Expect = 6.275e-42 Identity = 61/104 (58.65%), Postives = 78/104 (75.00%), Query Frame = 0 Query: 1 MKFCPICSNLLLVELGEQNFRFCCQTCPYISVITKKISKTMKLKRKEVDDVLGGEDAWAAADRTTTACPFCDSMEAFFVQMQIRSADEPMTTFYRCTLCANRWS 104 M FCP C NLL+VE RFCCQTCPYI IT+K+ K + L+RK+VDDVLGG++AW D+T T CPFC+ +A+F+Q+QIRSADEP TTFY+C C +W+ Sbjct: 1 MHFCPTCGNLLMVEPDSDGMRFCCQTCPYIYQITRKVQKKVPLQRKQVDDVLGGDEAWENVDQTDTRCPFCEHHKAYFMQIQIRSADEPSTTFYKCVGCKKQWN 104
BLAST of EWM21114.1 vs. NCBI_GenBank
Match: gi|1173944008|gb|OQR92793.1| (DNA-directed RNA polymerases III 12.5 kDa polypeptide [Achlya hypogyna]) HSP 1 Score: 141.354 bits (355), Expect = 1.322e-41 Identity = 61/104 (58.65%), Postives = 78/104 (75.00%), Query Frame = 0 Query: 1 MKFCPICSNLLLVELGEQNFRFCCQTCPYISVITKKISKTMKLKRKEVDDVLGGEDAWAAADRTTTACPFCDSMEAFFVQMQIRSADEPMTTFYRCTLCANRWS 104 M FCP C NLL+VE RFCCQTCPYI IT+K+ K + L+RK+VDDVLGG++AW D+T T CPFC+ +A+F+Q+QIRSADEP TTFY+C C +W+ Sbjct: 1 MHFCPTCGNLLMVEPDSDGMRFCCQTCPYIYQITRKVQKKVPLQRKQVDDVLGGDEAWENVDQTDTRCPFCEHNKAYFMQIQIRSADEPSTTFYKCVGCKKQWN 104
BLAST of EWM21114.1 vs. NCBI_GenBank
Match: gi|1173961418|gb|OQS07450.1| (DNA-directed RNA polymerases III 12.5 kDa polypeptide [Thraustotheca clavata]) HSP 1 Score: 140.198 bits (352), Expect = 4.768e-41 Identity = 60/104 (57.69%), Postives = 77/104 (74.04%), Query Frame = 0 Query: 1 MKFCPICSNLLLVELGEQNFRFCCQTCPYISVITKKISKTMKLKRKEVDDVLGGEDAWAAADRTTTACPFCDSMEAFFVQMQIRSADEPMTTFYRCTLCANRWS 104 M FCP C NLL+VE RFCCQTCPYI I +K+ K + L+RK+VDDVLGG++AW D+T T CPFC+ +A+F+Q+QIRSADEP TTFY+C C +W+ Sbjct: 1 MHFCPTCGNLLMVEPDSDGMRFCCQTCPYIYQINRKVQKKVPLQRKQVDDVLGGDEAWENVDQTDTRCPFCEHNKAYFMQIQIRSADEPSTTFYKCVGCKKQWN 104
BLAST of EWM21114.1 vs. NCBI_GenBank
Match: gi|673018072|ref|XP_008862997.1| (transcription factor S [Aphanomyces invadans] >gi|574482200|gb|ETW09192.1| transcription factor S [Aphanomyces invadans]) HSP 1 Score: 139.043 bits (349), Expect = 1.279e-40 Identity = 60/104 (57.69%), Postives = 77/104 (74.04%), Query Frame = 0 Query: 1 MKFCPICSNLLLVELGEQNFRFCCQTCPYISVITKKISKTMKLKRKEVDDVLGGEDAWAAADRTTTACPFCDSMEAFFVQMQIRSADEPMTTFYRCTLCANRWS 104 M FCP C NLL+VE RFCCQTCPYI I +K+ + L+RK+VDDVLGG++AW D+T T CPFC+ +A+F+Q+QIRSADEP TTFY+CT C +W+ Sbjct: 1 MHFCPTCGNLLMVEPDSDGMRFCCQTCPYIYKINQKVETKVPLQRKKVDDVLGGDEAWENVDQTDTRCPFCEHTKAYFMQIQIRSADEPSTTFYKCTGCKKQWN 104
BLAST of EWM21114.1 vs. NCBI_GenBank
Match: gi|698775868|ref|XP_009820978.1| (transcription factor S [Aphanomyces astaci] >gi|574123103|gb|ETV88578.1| transcription factor S [Aphanomyces astaci]) HSP 1 Score: 138.272 bits (347), Expect = 2.551e-40 Identity = 60/104 (57.69%), Postives = 77/104 (74.04%), Query Frame = 0 Query: 1 MKFCPICSNLLLVELGEQNFRFCCQTCPYISVITKKISKTMKLKRKEVDDVLGGEDAWAAADRTTTACPFCDSMEAFFVQMQIRSADEPMTTFYRCTLCANRWS 104 M FCP C NLL+VE RFCCQTCPYI I +K+ + L+RK+VDDVLGG++AW D+T T CPFC+ +A+F+Q+QIRSADEP TTFY+CT C +W+ Sbjct: 1 MHFCPTCGNLLMVEPDSDGMRFCCQTCPYIFKINQKVETKVPLQRKKVDDVLGGDEAWENVDQTDTRCPFCEHTKAYFMQIQIRSADEPSTTFYKCTGCKKQWN 104
BLAST of EWM21114.1 vs. NCBI_GenBank
Match: gi|678340292|emb|CDW74015.1| (rna polymerase iii smallest subunit [Stylonychia lemnae]) HSP 1 Score: 135.961 bits (341), Expect = 1.717e-39 Identity = 58/106 (54.72%), Postives = 79/106 (74.53%), Query Frame = 0 Query: 1 MKFCPICSNLLLVELGEQNFRFCCQTCPYISVITKKISKTMKLKRKEVDDVLGGEDAWAAADRTTTACPFCDSMEAFFVQMQIRSADEPMTTFYRCTLCANRWSGD 106 M FCP C+NLLL+E +FRF C+TCPY+ V+ + K M+L+RKEVDDVLGG++AW D+ CP C++ A+F+Q+QIRSADEPMTTFY+CT C+ +W + Sbjct: 1 MLFCPTCANLLLIEKTHSDFRFFCKTCPYVFVVEQNFEKKMQLERKEVDDVLGGKEAWENVDQIEAQCPKCNNKRAYFMQIQIRSADEPMTTFYKCTQCSYQWREN 106
BLAST of EWM21114.1 vs. NCBI_GenBank
Match: gi|325187761|emb|CCA22306.1| (DNAdirected RNA polymerases III 12.5 kDa polypeptide putative [Albugo laibachii Nc14]) HSP 1 Score: 133.65 bits (335), Expect = 1.293e-38 Identity = 57/104 (54.81%), Postives = 75/104 (72.12%), Query Frame = 0 Query: 1 MKFCPICSNLLLVELGEQNFRFCCQTCPYISVITKKISKTMKLKRKEVDDVLGGEDAWAAADRTTTACPFCDSMEAFFVQMQIRSADEPMTTFYRCTLCANRWS 104 M FCP C+NLLLVE + RF CQTCPY+ I +I K ++L+RK+VDDVLGG++AW D+T CP C+ A+F+Q+QIRSADEP TTFY+C C +W+ Sbjct: 1 MHFCPSCANLLLVEPNSEGMRFFCQTCPYLYQIESRIEKHVQLQRKQVDDVLGGDEAWDNVDQTEVRCPHCEHNHAYFMQIQIRSADEPSTTFYKCVQCKKQWN 104
BLAST of EWM21114.1 vs. NCBI_GenBank
Match: gi|403352044|gb|EJY75527.1| (DNA-directed RNA polymerase subunit (macronuclear) [Oxytricha trifallax]) HSP 1 Score: 131.724 bits (330), Expect = 7.953e-38 Identity = 57/106 (53.77%), Postives = 77/106 (72.64%), Query Frame = 0 Query: 1 MKFCPICSNLLLVELGEQNFRFCCQTCPYISVITKKISKTMKLKRKEVDDVLGGEDAWAAADRTTTACPFCDSMEAFFVQMQIRSADEPMTTFYRCTLCANRWSGD 106 M FCP C+NLLL+E +FRF C+TCPY+ V+ + K M+L+RKEVDDVLGG++AW D+ C C + A+F+Q+QIRSADEPMTTFY+CT C+ +W + Sbjct: 1 MLFCPTCANLLLIEKTHNDFRFFCKTCPYVFVVEQNFEKKMQLERKEVDDVLGGKEAWENVDQIEAECHKCGNRRAYFMQIQIRSADEPMTTFYKCTKCSYQWREN 106
BLAST of EWM21114.1 vs. NCBI_GenBank
Match: gi|675177815|ref|XP_008897792.1| (transcription factor S [Phytophthora parasitica INRA-310] >gi|566009851|gb|ETI32762.1| transcription factor S [Phytophthora parasitica P1569] >gi|567947319|gb|ETK73103.1| transcription factor S [Phytophthora parasitica] >gi|567976014|gb|ETL26543.1| transcription factor S [Phytophthora parasitica] >gi|568005471|gb|ETL79767.1| transcription factor S [Phytophthora parasitica] >gi|568035361|gb|ETM33006.1| transcription factor S [Phytophthora parasitica] >gi|568101973|gb|ETN16655.1| transcription factor S [Phytophthora parasitica INRA-310] >gi|570313551|gb|ETO61499.1| transcription factor S [Phytophthora parasitica P1976] >gi|570937327|gb|ETP02584.1| transcription factor S [Phytophthora parasitica CJ01A1] >gi|570967639|gb|ETP30758.1| transcription factor S [Phytophthora parasitica P10297] >gi|1214674272|gb|OWY96623.1| Transcription factor S [Phytophthora megakarya]) HSP 1 Score: 131.724 bits (330), Expect = 1.049e-37 Identity = 57/104 (54.81%), Postives = 75/104 (72.12%), Query Frame = 0 Query: 1 MKFCPICSNLLLVELGEQNFRFCCQTCPYISVITKKISKTMKLKRKEVDDVLGGEDAWAAADRTTTACPFCDSMEAFFVQMQIRSADEPMTTFYRCTLCANRWS 104 M FCP C N+LLVE RF CQTCPY+ I +K+ K + L+RK+VDDVLGG++AW D+T T CP C+ +A+F+Q+QIRSADEP TTFY+C C +W+ Sbjct: 1 MHFCPSCGNILLVEPDSDGMRFFCQTCPYLFQINEKVEKKVPLQRKQVDDVLGGDEAWENVDQTETRCPHCEYNKAYFMQIQIRSADEPSTTFYKCVQCKKQWN 104 The following BLAST results are available for this feature:
BLAST of EWM21114.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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