rna942, rna942 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna942
Unique Name	rna942
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1057
Alignment location	CM002456.1:785685..787007 +

Link to JBrowse

Properties


Property Name	Value
Product	rab family gtpase
Orig transcript id	gnl\|cribi\|Naga_100022g58.878.mrna
Orig protein id	gnl\|cribi\|Naga_100022g58.878
Gene	Rab8C
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:785685..787007 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Rab8C	gene905	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna942	rna942-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29779.1	cds942	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:785685..787007+
coding sequence from alignment at CM002456.1:785685..787007+

mRNA sequence

>rna942 ID=rna942|Name=rna942|organism=Nannochloropsis gaditana|type=mRNA|length=1057bp
CGCTGGGGGACGGCCATACTCGAAGTGCTCTTGTGTACAGTGACCAGAAA
TGTGTTCAACTGGCCTATAGGACACAGCAATTACATGACATCTATGCACT
GGCCAATGATTATTTCTCCCCTCCTTGCACGCAACCTTGTCCGTCTTCTC
GCTTCGCTTCGGCTAGCCTATGGTTCCACACTCCGGTTCTCACTCTCCGC
CACGTGCTACGTACTATCATGTCAAATAGAGCAGTACGTTGCCTAATCAA
TTGTGCTTTTCCTTGCGTATCTCATGCGAGCGGTCGCATCGGTCAGCCAT
ATGACACATGGACGCTTTGCTATTTAAAAATCCCTCTTATGGTTCGGGAC
AGGCAAATGGTTGATTCCCTTCGGCTAAGGAGGCTATGTGCTACGTCATG
CAACTTCTACTCGTCCTTTTCCTGTGGGCCTCGCATGCTCGCAAACCATC
CCCAACTTTGCTCGAGGCTGCCCACAGTTTGCCTAACTCGCGTCCAGCTA
CGCTTCAGTGTCCACTCCATGGGACACGGGGTCATTAACAAAAGATCGAG
AGCGAAGTTGAAGAAGGAAAACATTTTTCACACTTGACATTGTCTCATTG
GTTGTTGAATGACGACCCGCATCGCGTGCAACAAGACCCCTTTCCCACAT
AGAAGAAGAGCGTAGGTCGATTTATGAGTAATGTAGACGATACCGAGAAG
GACGCGTCCTCCTGGAAGGGTATTCGGAGGAGTATCGGTACGGACAGCAG
CAGCGTGGCCGATAAAGACGATTGCCTCAAGTGCAAAGTGGTGGGCAGCG
CGACTTTTTTTGCTGTATCTATTTACACATGGAGTCAAGGGGCGTCGTTA
CCCCCGGTCAACTCGAATAGACGTTTTCTATTCATATTCTCTGCTGTCTC
TGCCACCATTGGATTGGCGAGAGCGATCATATGAGAACTAGTCGAACTTA
TGGTGTCGAGCAGAGCAGACATTTTGCGCGAAAGAACAAAATGTTATGCA
TTAAGTTTTATAAAGTAAGTGATGACATAAAAACTTATCTCCGAAGCTTT
CCAGATT

protein sequence of rna942

>rna942-protein ID=rna942-protein|Name=rna942|organism=Nannochloropsis gaditana|type=polypeptide|length=300bp
MEDMSPHLTTRATTSVAPSLQSSPRDSKVKSRNRGSGKRTAGLSQKTLNI
VNNLQPAPATFSKERDDEEEERLLAMEEKRRQVAAGSDPSSSLPSSVVEY
TEFMSIRILLLGDSGVGKTSLMMRYSENEFAPCLLSTAGVDFKVRHLTLE
ESKRKVKVQIWDTAGQERMHVITRTYYKGSHGIALVYNLTDPDSFRNVNY
WMANIQQHAGDKVVKTLIGNKADLTDRAISYEQGAAMAKEYGFMHFFETS
AKSGANVHGAFNALALDIVRRIEEAQNESVVAAFGNGGLGNNPKKQCVID

mRNA from alignment at CM002456.1:785685..787007+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna942 ID=rna942|Name=rna942|organism=Nannochloropsis gaditana|type=mRNA|length=1323bp|location=Sequence derived from alignment at CM002456.1:785685..787007+ (Nannochloropsis gaditana)
TGGGCTCAGCCCCGCCTCGCGGCAGTGTTAAAGGAAAGTCATTATACTCA
ACCACAATACAAATATTCCAATCTCCATGCACAGCAATGGAAGATATGTC
TCCACATCTAACGTAAGTCGCATGAGGCTGTCTGACTTTTCACTTTCTTG
GTCGAAAACATAGCTTTCACGCCTCTCAGCGCACCTCACGACGACCCGTA
TGTGTCTCGTACCGTTCACACGAACAGCACAAGGGCCACGACCTCTGTGG
CGCCCTCACTCCAATCGTCTCCACGCGATAGCAAAGTGAAATCCCGGAAC
AGGGGCAGCGGCAAGCGAACGGCGGGTTTAAGTCAGAAAACTCTAAACAT
TGTCAACAATTTGCAGCCCGCACCTGCAACGGTGCGTCATGTTATTCTCG
CAATCATCACTGGTACACCACTCGTGCATCAACTTTTTTTCTGAGTTAAA
TCATACGACTTATTTACACAAGTTTTcaaaggaaagggacgatgaagaag
aggaacggtTGCTGGCtatggaagaaaaaagaaggcaAGTGGCAGCCGGT
TCGGATCCCTCGTCATCCTTGCCCTCCAGCGTTGTAGAATACACCGAGTT
CATGAGCATCCGCATCCTGTTGCTAGGAGACTCAGGTAAGTCAAATCTCT
CCGTCAAGAACTTCGAATGCGGCCCACGAGTTCCAAACTCATGCCTCCAT
TTCTCTGTTTCCGTTTTGTCGAGCTCGTCTAATAATTGTTCCGTACATTC
AACAGGCGTGGGGAAAACTAGCTTAATGATGAGGTATTCTGAGAACGAGT
TTGCCCCCTGCCTACTCAGCACGGCGGGTGTAGATTTCAAAGTGCGGCAC
CTGACActggaagaaagcaagaggaaggtgaaaGTTCAGATCTGGGATAC
TGCGGGTCAGGAGCGGATGCACGTCATCACCAGAACATACTACAAGGGCA
GCCATGGCATTGCGCTCGTTTATAACCTCACAGATCCAGACTCGTTCAGA
AATGTCAACTATTGGATGGCGAATATCCAGCAGCACGCAGGTGATAAAGT
CGTGAAAACCCTCATAGGTAACAAAGCCGACCTCACGGACCGCGCCATTT
CTTACGAGCAAGGCGCAGCAATGGCGAAGGAATATGGCTTCATGCATTTT
TTCGAAACCTCGGCCAAAAGTGGCGCCAATGTGCATGGCGCATTTAATGC
ACTAGCGCTCGACATAGTTCGTCGCATTGAGGAAGCTCAGAACGAGTCAG
TAGTCGCTGCGTTCGGCAATGGAGGGCTAGGAAATAATCCGAAAAAGCAA
TGTGTCATAGACTGAAAGATTTT

Coding sequence (CDS) from alignment at CM002456.1:785685..787007+

>rna942 ID=rna942|Name=rna942|organism=Nannochloropsis gaditana|type=CDS|length=3612bp|location=Sequence derived from alignment at CM002456.1:785685..787007+ (Nannochloropsis gaditana)
ATGGAAGATATGTCTCCACATCTAACCACAAGGGCCACGACCTCTGTGGC
GCCCTCACTCCAATCGTCTCCACGCGATAGCAAAGTGAAATCCCGGAACA
GGGGCAGCGGCAAGCGAACGGCGGGTTTAAGTCAGAAAACTCTAAACATT
GTCAACAATTTGCAGCCCGCACCTGCAACGTTTTcaaaggaaagggacga
tgaagaagaggaacggtTGCTGGCtatggaagaaaaaagaaggcaAGTGG
CAGCCGGTTCGGATCCCTCGTCATCCTTGCCCTCCAGCGTTGTAGAATAC
ACCGAGTTCATGAGCATCCGCATCCTGTTGCTAGGAGACTCAGGCGTGGG
GAAAACTAGCTTAATGATGAGGTATTCTGAGAACGAGTTTGCCCCCTGCC
TACTCAGCACGGCGGGTGTAGATTTCAAAGTGCGGCACCTGACActggaa
gaaagcaagaggaaggtgaaaGTTCAGATCTGGGATACTGCGGGTCAGGA
GCGGATGCACGTCATCACCAGAACATACTACAAGGGCAGCCATGGCATTG
CGCTCGTTTATAACCTCACAGATCCAGACTCGTTCAGAAATGTCAACTAT
TGGATGGCGAATATCCAGCAGCACGCAGGTGATAAAGTCGTGAAAACCCT
CATAGGTAACAAAGCCGACCTCACGGACCGCGCCATTTCTTACGAGCAAG
GCGCAGCAATGGCGAAGGAATATGGCTTCATGCATTTTTTCGAAACCTCG
GCCAAAAGTGGCGCCAATGTGCATGGCGCATTTAATGCACTAGCGCTCGA
CATAGTTCGTCGCATTGAGGAAGCTCAGAACGAGTCAGTAGTCGCTGCGT
TCGGCAATGGAGGGCTAGGAAATAATCCGAAAAAGCAATGTGTCATAGAC
TGAATGGAAGATATGTCTCCACATCTAACCACAAGGGCCACGACCTCTGT
GGCGCCCTCACTCCAATCGTCTCCACGCGATAGCAAAGTGAAATCCCGGA
ACAGGGGCAGCGGCAAGCGAACGGCGGGTTTAAGTCAGAAAACTCTAAAC
ATTGTCAACAATTTGCAGCCCGCACCTGCAACGTTTTcaaaggaaaggga
cgatgaagaagaggaacggtTGCTGGCtatggaagaaaaaagaaggcaAG
TGGCAGCCGGTTCGGATCCCTCGTCATCCTTGCCCTCCAGCGTTGTAGAA
TACACCGAGTTCATGAGCATCCGCATCCTGTTGCTAGGAGACTCAGGCGT
GGGGAAAACTAGCTTAATGATGAGGTATTCTGAGAACGAGTTTGCCCCCT
GCCTACTCAGCACGGCGGGTGTAGATTTCAAAGTGCGGCACCTGACActg
gaagaaagcaagaggaaggtgaaaGTTCAGATCTGGGATACTGCGGGTCA
GGAGCGGATGCACGTCATCACCAGAACATACTACAAGGGCAGCCATGGCA
TTGCGCTCGTTTATAACCTCACAGATCCAGACTCGTTCAGAAATGTCAAC
TATTGGATGGCGAATATCCAGCAGCACGCAGGTGATAAAGTCGTGAAAAC
CCTCATAGGTAACAAAGCCGACCTCACGGACCGCGCCATTTCTTACGAGC
AAGGCGCAGCAATGGCGAAGGAATATGGCTTCATGCATTTTTTCGAAACC
TCGGCCAAAAGTGGCGCCAATGTGCATGGCGCATTTAATGCACTAGCGCT
CGACATAGTTCGTCGCATTGAGGAAGCTCAGAACGAGTCAGTAGTCGCTG
CGTTCGGCAATGGAGGGCTAGGAAATAATCCGAAAAAGCAATGTGTCATA
GACTGAATGGAAGATATGTCTCCACATCTAACCACAAGGGCCACGACCTC
TGTGGCGCCCTCACTCCAATCGTCTCCACGCGATAGCAAAGTGAAATCCC
GGAACAGGGGCAGCGGCAAGCGAACGGCGGGTTTAAGTCAGAAAACTCTA
AACATTGTCAACAATTTGCAGCCCGCACCTGCAACGTTTTcaaaggaaag
ggacgatgaagaagaggaacggtTGCTGGCtatggaagaaaaaagaaggc
aAGTGGCAGCCGGTTCGGATCCCTCGTCATCCTTGCCCTCCAGCGTTGTA
GAATACACCGAGTTCATGAGCATCCGCATCCTGTTGCTAGGAGACTCAGG
CGTGGGGAAAACTAGCTTAATGATGAGGTATTCTGAGAACGAGTTTGCCC
CCTGCCTACTCAGCACGGCGGGTGTAGATTTCAAAGTGCGGCACCTGACA
ctggaagaaagcaagaggaaggtgaaaGTTCAGATCTGGGATACTGCGGG
TCAGGAGCGGATGCACGTCATCACCAGAACATACTACAAGGGCAGCCATG
GCATTGCGCTCGTTTATAACCTCACAGATCCAGACTCGTTCAGAAATGTC
AACTATTGGATGGCGAATATCCAGCAGCACGCAGGTGATAAAGTCGTGAA
AACCCTCATAGGTAACAAAGCCGACCTCACGGACCGCGCCATTTCTTACG
AGCAAGGCGCAGCAATGGCGAAGGAATATGGCTTCATGCATTTTTTCGAA
ACCTCGGCCAAAAGTGGCGCCAATGTGCATGGCGCATTTAATGCACTAGC
GCTCGACATAGTTCGTCGCATTGAGGAAGCTCAGAACGAGTCAGTAGTCG
CTGCGTTCGGCAATGGAGGGCTAGGAAATAATCCGAAAAAGCAATGTGTC
ATAGACTGAATGGAAGATATGTCTCCACATCTAACCACAAGGGCCACGAC
CTCTGTGGCGCCCTCACTCCAATCGTCTCCACGCGATAGCAAAGTGAAAT
CCCGGAACAGGGGCAGCGGCAAGCGAACGGCGGGTTTAAGTCAGAAAACT
CTAAACATTGTCAACAATTTGCAGCCCGCACCTGCAACGTTTTcaaagga
aagggacgatgaagaagaggaacggtTGCTGGCtatggaagaaaaaagaa
ggcaAGTGGCAGCCGGTTCGGATCCCTCGTCATCCTTGCCCTCCAGCGTT
GTAGAATACACCGAGTTCATGAGCATCCGCATCCTGTTGCTAGGAGACTC
AGGCGTGGGGAAAACTAGCTTAATGATGAGGTATTCTGAGAACGAGTTTG
CCCCCTGCCTACTCAGCACGGCGGGTGTAGATTTCAAAGTGCGGCACCTG
ACActggaagaaagcaagaggaaggtgaaaGTTCAGATCTGGGATACTGC
GGGTCAGGAGCGGATGCACGTCATCACCAGAACATACTACAAGGGCAGCC
ATGGCATTGCGCTCGTTTATAACCTCACAGATCCAGACTCGTTCAGAAAT
GTCAACTATTGGATGGCGAATATCCAGCAGCACGCAGGTGATAAAGTCGT
GAAAACCCTCATAGGTAACAAAGCCGACCTCACGGACCGCGCCATTTCTT
ACGAGCAAGGCGCAGCAATGGCGAAGGAATATGGCTTCATGCATTTTTTC
GAAACCTCGGCCAAAAGTGGCGCCAATGTGCATGGCGCATTTAATGCACT
AGCGCTCGACATAGTTCGTCGCATTGAGGAAGCTCAGAACGAGTCAGTAG
TCGCTGCGTTCGGCAATGGAGGGCTAGGAAATAATCCGAAAAAGCAATGT
GTCATAGACTGA

Synonyms

Publications