EWM29779.1, cds942 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29779.1 vs. NCBI_GenBank
Match: gi|585112359|gb|EWM29779.1| (rab family gtpase [Nannochloropsis gaditana]) HSP 1 Score: 627.476 bits (1617), Expect = 0.000e+0 Identity = 300/300 (100.00%), Postives = 300/300 (100.00%), Query Frame = 0 Query: 1 MEDMSPHLTTRATTSVAPSLQSSPRDSKVKSRNRGSGKRTAGLSQKTLNIVNNLQPAPATFSKERDDEEEERLLAMEEKRRQVAAGSDPSSSLPSSVVEYTEFMSIRILLLGDSGVGKTSLMMRYSENEFAPCLLSTAGVDFKVRHLTLEESKRKVKVQIWDTAGQERMHVITRTYYKGSHGIALVYNLTDPDSFRNVNYWMANIQQHAGDKVVKTLIGNKADLTDRAISYEQGAAMAKEYGFMHFFETSAKSGANVHGAFNALALDIVRRIEEAQNESVVAAFGNGGLGNNPKKQCVID 300 MEDMSPHLTTRATTSVAPSLQSSPRDSKVKSRNRGSGKRTAGLSQKTLNIVNNLQPAPATFSKERDDEEEERLLAMEEKRRQVAAGSDPSSSLPSSVVEYTEFMSIRILLLGDSGVGKTSLMMRYSENEFAPCLLSTAGVDFKVRHLTLEESKRKVKVQIWDTAGQERMHVITRTYYKGSHGIALVYNLTDPDSFRNVNYWMANIQQHAGDKVVKTLIGNKADLTDRAISYEQGAAMAKEYGFMHFFETSAKSGANVHGAFNALALDIVRRIEEAQNESVVAAFGNGGLGNNPKKQCVID Sbjct: 1 MEDMSPHLTTRATTSVAPSLQSSPRDSKVKSRNRGSGKRTAGLSQKTLNIVNNLQPAPATFSKERDDEEEERLLAMEEKRRQVAAGSDPSSSLPSSVVEYTEFMSIRILLLGDSGVGKTSLMMRYSENEFAPCLLSTAGVDFKVRHLTLEESKRKVKVQIWDTAGQERMHVITRTYYKGSHGIALVYNLTDPDSFRNVNYWMANIQQHAGDKVVKTLIGNKADLTDRAISYEQGAAMAKEYGFMHFFETSAKSGANVHGAFNALALDIVRRIEEAQNESVVAAFGNGGLGNNPKKQCVID 300
BLAST of EWM29779.1 vs. NCBI_GenBank
Match: gi|298710848|emb|CBJ26357.1| (Rab8C, RAB family GTPase [Ectocarpus siliculosus]) HSP 1 Score: 224.172 bits (570), Expect = 3.956e-67 Identity = 125/229 (54.59%), Postives = 163/229 (71.18%), Query Frame = 0 Query: 43 LSQKTLNIVNNLQPAPATFSKERDDEEEERLLAMEEKRRQVAAGSDPSSSLPSSVVEYTEFMSIRILLLGDSGVGKTSLMMRYSENEFAPCLLSTAGVDFKVRHLTLEESKRKVKVQIWDTAGQERMHVITRTYYKGSHGIALVYNLTDPDSFRNVNYWMANIQQHA--GDKVVKTLIGNKADLTDRAISYEQGAAMAKEYGFMHFFETSAKSGANVHGAFNALALDIV 269 LS+KTLNIV NL+ S D E + +EE++R +L ++ +IRILLLGDSGVGKTSLM R+SE++FAP L+STAGVD+KV+ TL+ + ++V+ QIWDTAGQER HVITRTYY+G+HGIAL Y++TD DSF+NVNYWMANIQ HA G ++ K ++GNK D+ DRAIS + G +AKE+G + FFE SAK+G V AF +LA+DIV Sbjct: 83 LSKKTLNIVTNLK------SHTTDVRSREEMEDLEEEKRLAEEERRFKENLRQKGDDFDH--TIRILLLGDSGVGKTSLMTRFSEDKFAPTLISTAGVDYKVQ--TLDINGKRVRCQIWDTAGQERFHVITRTYYRGAHGIALAYDVTDDDSFKNVNYWMANIQTHAEPGHRMQKMILGNKVDIEDRAISTKDGQDVAKEFG-VRFFEVSAKNGYGVSDAFYSLAVDIV 300
BLAST of EWM29779.1 vs. NCBI_GenBank
Match: gi|145521654|ref|XP_001446682.1| (hypothetical protein [Paramecium tetraurelia strain d4-2] >gi|124414160|emb|CAK79285.1| unnamed protein product [Paramecium tetraurelia]) HSP 1 Score: 195.667 bits (496), Expect = 1.685e-58 Identity = 86/171 (50.29%), Postives = 125/171 (73.10%), Query Frame = 0 Query: 104 MSIRILLLGDSGVGKTSLMMRYSENEFAPCLLSTAGVDFKVRHLTLEESKRKVKVQIWDTAGQERMHVITRTYYKGSHGIALVYNLTDPDSFRNVNYWMANIQQHAGDKVVKTLIGNKADLTDRAISYEQGAAMAKEYGFMHFFETSAKSGANVHGAFNALALDIVRRIEE 274 + I+ILL+G+SGVGKT +++RY+EN+F LST G+DFK++ + ++E + VK+QIWDTAGQER IT+TYYKG+ GI LV+ + D ++F +++ WM I+QHA D ++K LIGNK DL DR ISYEQ MA++Y + +FETSAK G N++ F +A I ++E+ Sbjct: 14 LLIKILLIGNSGVGKTQILLRYTENQFKSSFLSTIGIDFKIKKIQVDE--KVVKMQIWDTAGQERYQTITQTYYKGAMGIILVFAVNDKETFNDIDKWMNQIKQHASDNIIKVLIGNKTDLPDRCISYEQALQMAQKYN-IPYFETSAKEGTNINDTFQQIAKTIKEQLEK 181
BLAST of EWM29779.1 vs. NCBI_GenBank
Match: gi|66814402|ref|XP_641380.1| (Rab GTPase [Dictyostelium discoideum AX4] >gi|134228|sp|P20790.1|RAB8A_DICDI RecName: Full=Ras-related protein Rab-8A; AltName: Full=GTP-binding protein SAS1 >gi|167877|gb|AAA33249.1| GTP-binding protein SAS1 [Dictyostelium discoideum] >gi|60469254|gb|EAL67248.1| Rab GTPase [Dictyostelium discoideum AX4]) HSP 1 Score: 194.126 bits (492), Expect = 6.544e-58 Identity = 96/196 (48.98%), Postives = 133/196 (67.86%), Query Frame = 0 Query: 106 IRILLLGDSGVGKTSLMMRYSENEFAPCLLSTAGVDFKVRHLTLEESKRKVKVQIWDTAGQERMHVITRTYYKGSHGIALVYNLTDPDSFRNVNYWMANIQQHAGDKVVKTLIGNKADLTD-RAISYEQGAAMAKEYGFMHFFETSAKSGANVHGAFNALALDIVRRIEEAQNE--SVVAAFGNGGLGNNPKKQCV 298 I++LL+GDSGVGK+ L++R+SE+ F P ++T G+DFK+R + LE +++K+QIWDTAGQER IT YY+G+ GI LVY++TD SF N+ W+ NI+QHA D V K LIGNK D+ + + + +G ++A EYG + F ETSAK+ NV AF +LA DI +R+ + NE VV N G NN KK C Sbjct: 16 IKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELE--GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGNIRNWIRNIEQHATDSVNKMLIGNKCDMAEKKVVDSSRGKSLADEYG-IKFLETSAKNSINVEEAFISLAKDIKKRMIDTPNEQPQVVQPGTNLGANNNKKKACC 208
BLAST of EWM29779.1 vs. NCBI_GenBank
Match: gi|673037838|ref|XP_008872880.1| (hypothetical protein H310_08786 [Aphanomyces invadans] >gi|574471676|gb|ETV98683.1| hypothetical protein H310_08786 [Aphanomyces invadans]) HSP 1 Score: 191.815 bits (486), Expect = 5.526e-57 Identity = 90/175 (51.43%), Postives = 127/175 (72.57%), Query Frame = 0 Query: 106 IRILLLGDSGVGKTSLMMRYSENEFAPCLLSTAGVDFKVRHLTLEESKRKVKVQIWDTAGQERMHVITRTYYKGSHGIALVYNLTDPDSFRNVNYWMANIQQHAGDKVVKTLIGNKADL--TDRAISYEQGAAMAKEYGFMHFFETSAKSGANVHGAFNALALDIVRRIEEAQNE 278 +++LL+GDSGVGK+ L+MRYS++ F ++T G+DFKV+ T++ ++VK+QIWDTAGQER IT YY+G+ GI LVY++TD SF+NV WM IQQHA V K L+ NK D+ +DRA+S EQG A+A EYG + FFETSAKS V AF ++A+D+ +R+ E+ ++ Sbjct: 12 VKLLLIGDSGVGKSCLLMRYSDDSFTTSFITTIGIDFKVK--TIDVDGKRVKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDDHSFQNVRNWMRQIQQHASPNVNKILVANKCDVDPSDRAVSKEQGEALAAEYG-VQFFETSAKSNLQVDEAFRSIAVDVQKRLAESDSD 183
BLAST of EWM29779.1 vs. NCBI_GenBank
Match: gi|926791037|ref|XP_013903992.1| (small rab-related GTPase [Monoraphidium neglectum] >gi|761974949|gb|KIZ04973.1| small rab-related GTPase [Monoraphidium neglectum]) HSP 1 Score: 191.815 bits (486), Expect = 6.255e-57 Identity = 88/169 (52.07%), Postives = 124/169 (73.37%), Query Frame = 0 Query: 106 IRILLLGDSGVGKTSLMMRYSENEFAPCLLSTAGVDFKVRHLTLEESKRKVKVQIWDTAGQERMHVITRTYYKGSHGIALVYNLTDPDSFRNVNYWMANIQQHAGDKVVKTLIGNKADLTD--RAISYEQGAAMAKEYGFMHFFETSAKSGANVHGAFNALALDIVRRI 272 I++LL+GDSGVGK+ L++R+SE F P ++T G+DFK++ + L+ + VK+QIWDTAGQER IT YY+G+ GI LVY++TD SF N+ WM NI+QHA D V K L+GNK+D+ D RA+ Y +G A+A EYG + FFETSAK +NV AF ++A D+++R+ Sbjct: 13 IKLLLIGDSGVGKSCLLLRFSEESFTPSFITTIGIDFKIKKIFLDN--KWVKLQIWDTAGQERFRTITSAYYRGAMGILLVYDVTDEASFNNIRNWMRNIEQHASDTVNKILVGNKSDMADERRAVPYARGKALADEYG-IAFFETSAKDNSNVEEAFTSIARDVMQRL 178
BLAST of EWM29779.1 vs. NCBI_GenBank
Match: gi|302766964|ref|XP_002966902.1| (rab family GTPase [Selaginella moellendorffii] >gi|300164893|gb|EFJ31501.1| rab family GTPase [Selaginella moellendorffii]) HSP 1 Score: 191.815 bits (486), Expect = 8.122e-57 Identity = 88/173 (50.87%), Postives = 128/173 (73.99%), Query Frame = 0 Query: 106 IRILLLGDSGVGKTSLMMRYSENEFAPCLLSTAGVDFKVRHLTLEESKRKVKVQIWDTAGQERMHVITRTYYKGSHGIALVYNLTDPDSFRNVNYWMANIQQHAGDKVVKTLIGNKADLTD--RAISYEQGAAMAKEYGFMHFFETSAKSGANVHGAFNALALDIVRRIEEAQ 276 I++LL+GDSGVGK+ +++R+S++ F ++T G+DFK+R T+E R+VK+Q+WDTAGQER IT YY+G+ GI LVY++TD SF N+ W+ NI+Q+A + V + L+GNKAD+ + RA++ QG A+A EYG + FFETSAK+G NV F A+A DI RR+EE++ Sbjct: 17 IKLLLIGDSGVGKSCVLLRFSDDSFTTSFITTIGIDFKIR--TIELDGRRVKLQVWDTAGQERFRTITTAYYRGAMGIILVYDVTDESSFNNIRNWVKNIEQNASENVSRVLVGNKADMDESKRAVTTAQGQALANEYG-IRFFETSAKTGQNVEETFFAIARDIKRRLEESE 186
BLAST of EWM29779.1 vs. NCBI_GenBank
Match: gi|302755370|ref|XP_002961109.1| (rab family GTPase [Selaginella moellendorffii] >gi|300172048|gb|EFJ38648.1| rab family GTPase [Selaginella moellendorffii]) HSP 1 Score: 191.43 bits (485), Expect = 1.042e-56 Identity = 88/173 (50.87%), Postives = 128/173 (73.99%), Query Frame = 0 Query: 106 IRILLLGDSGVGKTSLMMRYSENEFAPCLLSTAGVDFKVRHLTLEESKRKVKVQIWDTAGQERMHVITRTYYKGSHGIALVYNLTDPDSFRNVNYWMANIQQHAGDKVVKTLIGNKADLTD--RAISYEQGAAMAKEYGFMHFFETSAKSGANVHGAFNALALDIVRRIEEAQ 276 I++LL+GDSGVGK+ +++R+S++ F ++T G+DFK+R T+E R+VK+Q+WDTAGQER IT YY+G+ GI LVY++TD SF N+ W+ NI+Q+A + V + L+GNKAD+ + RA++ QG A+A EYG + FFETSAK+G NV F A+A DI RR+EE++ Sbjct: 17 IKLLLIGDSGVGKSCVLLRFSDDSFTTSFITTIGIDFKIR--TIELDGRRVKLQVWDTAGQERFRTITTAYYRGAMGIILVYDVTDESSFNNIRNWVKNIEQNASENVSRVLVGNKADMDESKRAVTTAQGQALANEYG-IRFFETSAKTGQNVEETFFAIARDIKRRLEESE 186
BLAST of EWM29779.1 vs. NCBI_GenBank
Match: gi|145512599|ref|XP_001442216.1| (hypothetical protein [Paramecium tetraurelia strain d4-2] >gi|74831288|emb|CAI39277.1| rab_B67 [Paramecium tetraurelia] >gi|74833789|emb|CAI39358.1| rab_A67 [Paramecium tetraurelia] >gi|124409488|emb|CAK74819.1| unnamed protein product (macronuclear) [Paramecium tetraurelia]) HSP 1 Score: 191.045 bits (484), Expect = 1.239e-56 Identity = 89/160 (55.62%), Postives = 120/160 (75.00%), Query Frame = 0 Query: 106 IRILLLGDSGVGKTSLMMRYSENEFAPCLLSTAGVDFKVRHLTLEESKRKVKVQIWDTAGQERMHVITRTYYKGSHGIALVYNLTDPDSFRNVNYWMANIQQHAGDKVVKTLIGNKADLTDRAISYEQGAAMAKEYGFMHFFETSAKSGANVHGAFNALA 265 I+ILL+GDSGVGKT++++R+ EN F LST G+DFK++ + +E +K+K+QIWDTAGQER IT+TYYKG+ GI LVY++ D DSF N++ WM I+QHA + V K LIGNK D+ +R +S E+G A+AK+YG + FFETSAK G V AF A+A Sbjct: 16 IKILLIGDSGVGKTNVLLRFCENNFQQTYLSTIGIDFKIKSIDVE--GKKIKMQIWDTAGQERFKTITQTYYKGAMGIILVYSIDDKDSFTNISSWMNQIKQHASENVCKLLIGNKIDVPNRQVSKEEGEALAKQYG-VPFFETSAKDGTQVAEAFIAMA 172
BLAST of EWM29779.1 vs. NCBI_GenBank
Match: gi|145522135|ref|XP_001446917.1| (hypothetical protein [Paramecium tetraurelia strain d4-2] >gi|74833715|emb|CAI39332.1| rab_C73 [Paramecium tetraurelia] >gi|124414406|emb|CAK79520.1| unnamed protein product [Paramecium tetraurelia]) HSP 1 Score: 191.045 bits (484), Expect = 1.280e-56 Identity = 86/160 (53.75%), Postives = 120/160 (75.00%), Query Frame = 0 Query: 106 IRILLLGDSGVGKTSLMMRYSENEFAPCLLSTAGVDFKVRHLTLEESKRKVKVQIWDTAGQERMHVITRTYYKGSHGIALVYNLTDPDSFRNVNYWMANIQQHAGDKVVKTLIGNKADLTDRAISYEQGAAMAKEYGFMHFFETSAKSGANVHGAFNALA 265 I++LL+GDSGVGKT++++R+ EN F P LST G+DFK++ + +E +K+K+QIWDTAGQER IT+TYYKG+ GI LVY++ D +SF+N+ WM+ I+QHA + V K LIGNK D+ +R ++ E+G +AK YG + FFETSAK G V AF A+A Sbjct: 16 IKVLLIGDSGVGKTNVLLRFCENNFQPTYLSTIGIDFKIKSIDVE--GKKIKMQIWDTAGQERFKTITQTYYKGAMGIILVYSIDDRESFKNIQNWMSQIKQHASENVCKLLIGNKIDVPNRQVTKEEGEELAKSYG-VSFFETSAKEGTQVSDAFYAIA 172 The following BLAST results are available for this feature:
BLAST of EWM29779.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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