EWM29779.1, cds942 (CDS) Nannochloropsis gaditana

Overview
NameEWM29779.1
Unique Namecds942
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:785771..785796 +
Alignment locationCM002456.1:785912..786065 +
Alignment locationCM002456.1:786157..786319 +
Alignment locationCM002456.1:786440..786999 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29779.1
Productrab family gtpase
Orig transcript idgnl|cribi|Naga_100022g58.878.mrna
GeneRab8C
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:785771..785796 +
CM002456.1supercontigCM002456.1:785912..786065 +
CM002456.1supercontigCM002456.1:786157..786319 +
CM002456.1supercontigCM002456.1:786440..786999 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0005515protein binding
GO:0000166nucleotide binding
GO:0003924GTPase activity
GO:0005525GTP binding
Vocabulary: Biological Process
TermDefinition
GO:0016043cellular component organization
GO:0009605response to external stimulus
GO:0006950response to stress
GO:0006810transport
GO:0048856anatomical structure development
GO:0015031protein transport
GO:0006913nucleocytoplasmic transport
GO:0007165signal transduction
GO:0006886intracellular protein transport
GO:0007264small GTPase mediated signal transduction
Vocabulary: Cellular Component
TermDefinition
GO:0005773vacuole
GO:0016020membrane
GO:0005622intracellular
Vocabulary: INTERPRO
TermDefinition
IPR005225Small_GTP-bd_dom
IPR027417P-loop_NTPase
IPR020849Small_GTPase_Ras
IPR003579Small_GTPase_Rab_type
IPR002041Ran_GTPase
IPR003578Small_GTPase_Rho
IPR001806Small_GTPase
Homology
BLAST of EWM29779.1 vs. NCBI_GenBank
Match: gi|585112359|gb|EWM29779.1| (rab family gtpase [Nannochloropsis gaditana])

HSP 1 Score: 627.476 bits (1617), Expect = 0.000e+0
Identity = 300/300 (100.00%), Postives = 300/300 (100.00%), Query Frame = 0
Query:    1 MEDMSPHLTTRATTSVAPSLQSSPRDSKVKSRNRGSGKRTAGLSQKTLNIVNNLQPAPATFSKERDDEEEERLLAMEEKRRQVAAGSDPSSSLPSSVVEYTEFMSIRILLLGDSGVGKTSLMMRYSENEFAPCLLSTAGVDFKVRHLTLEESKRKVKVQIWDTAGQERMHVITRTYYKGSHGIALVYNLTDPDSFRNVNYWMANIQQHAGDKVVKTLIGNKADLTDRAISYEQGAAMAKEYGFMHFFETSAKSGANVHGAFNALALDIVRRIEEAQNESVVAAFGNGGLGNNPKKQCVID 300
            MEDMSPHLTTRATTSVAPSLQSSPRDSKVKSRNRGSGKRTAGLSQKTLNIVNNLQPAPATFSKERDDEEEERLLAMEEKRRQVAAGSDPSSSLPSSVVEYTEFMSIRILLLGDSGVGKTSLMMRYSENEFAPCLLSTAGVDFKVRHLTLEESKRKVKVQIWDTAGQERMHVITRTYYKGSHGIALVYNLTDPDSFRNVNYWMANIQQHAGDKVVKTLIGNKADLTDRAISYEQGAAMAKEYGFMHFFETSAKSGANVHGAFNALALDIVRRIEEAQNESVVAAFGNGGLGNNPKKQCVID
Sbjct:    1 MEDMSPHLTTRATTSVAPSLQSSPRDSKVKSRNRGSGKRTAGLSQKTLNIVNNLQPAPATFSKERDDEEEERLLAMEEKRRQVAAGSDPSSSLPSSVVEYTEFMSIRILLLGDSGVGKTSLMMRYSENEFAPCLLSTAGVDFKVRHLTLEESKRKVKVQIWDTAGQERMHVITRTYYKGSHGIALVYNLTDPDSFRNVNYWMANIQQHAGDKVVKTLIGNKADLTDRAISYEQGAAMAKEYGFMHFFETSAKSGANVHGAFNALALDIVRRIEEAQNESVVAAFGNGGLGNNPKKQCVID 300          
BLAST of EWM29779.1 vs. NCBI_GenBank
Match: gi|298710848|emb|CBJ26357.1| (Rab8C, RAB family GTPase [Ectocarpus siliculosus])

HSP 1 Score: 224.172 bits (570), Expect = 3.956e-67
Identity = 125/229 (54.59%), Postives = 163/229 (71.18%), Query Frame = 0
Query:   43 LSQKTLNIVNNLQPAPATFSKERDDEEEERLLAMEEKRRQVAAGSDPSSSLPSSVVEYTEFMSIRILLLGDSGVGKTSLMMRYSENEFAPCLLSTAGVDFKVRHLTLEESKRKVKVQIWDTAGQERMHVITRTYYKGSHGIALVYNLTDPDSFRNVNYWMANIQQHA--GDKVVKTLIGNKADLTDRAISYEQGAAMAKEYGFMHFFETSAKSGANVHGAFNALALDIV 269
            LS+KTLNIV NL+      S   D    E +  +EE++R          +L     ++    +IRILLLGDSGVGKTSLM R+SE++FAP L+STAGVD+KV+  TL+ + ++V+ QIWDTAGQER HVITRTYY+G+HGIAL Y++TD DSF+NVNYWMANIQ HA  G ++ K ++GNK D+ DRAIS + G  +AKE+G + FFE SAK+G  V  AF +LA+DIV
Sbjct:   83 LSKKTLNIVTNLK------SHTTDVRSREEMEDLEEEKRLAEEERRFKENLRQKGDDFDH--TIRILLLGDSGVGKTSLMTRFSEDKFAPTLISTAGVDYKVQ--TLDINGKRVRCQIWDTAGQERFHVITRTYYRGAHGIALAYDVTDDDSFKNVNYWMANIQTHAEPGHRMQKMILGNKVDIEDRAISTKDGQDVAKEFG-VRFFEVSAKNGYGVSDAFYSLAVDIV 300          
BLAST of EWM29779.1 vs. NCBI_GenBank
Match: gi|145521654|ref|XP_001446682.1| (hypothetical protein [Paramecium tetraurelia strain d4-2] >gi|124414160|emb|CAK79285.1| unnamed protein product [Paramecium tetraurelia])

HSP 1 Score: 195.667 bits (496), Expect = 1.685e-58
Identity = 86/171 (50.29%), Postives = 125/171 (73.10%), Query Frame = 0
Query:  104 MSIRILLLGDSGVGKTSLMMRYSENEFAPCLLSTAGVDFKVRHLTLEESKRKVKVQIWDTAGQERMHVITRTYYKGSHGIALVYNLTDPDSFRNVNYWMANIQQHAGDKVVKTLIGNKADLTDRAISYEQGAAMAKEYGFMHFFETSAKSGANVHGAFNALALDIVRRIEE 274
            + I+ILL+G+SGVGKT +++RY+EN+F    LST G+DFK++ + ++E  + VK+QIWDTAGQER   IT+TYYKG+ GI LV+ + D ++F +++ WM  I+QHA D ++K LIGNK DL DR ISYEQ   MA++Y  + +FETSAK G N++  F  +A  I  ++E+
Sbjct:   14 LLIKILLIGNSGVGKTQILLRYTENQFKSSFLSTIGIDFKIKKIQVDE--KVVKMQIWDTAGQERYQTITQTYYKGAMGIILVFAVNDKETFNDIDKWMNQIKQHASDNIIKVLIGNKTDLPDRCISYEQALQMAQKYN-IPYFETSAKEGTNINDTFQQIAKTIKEQLEK 181          
BLAST of EWM29779.1 vs. NCBI_GenBank
Match: gi|66814402|ref|XP_641380.1| (Rab GTPase [Dictyostelium discoideum AX4] >gi|134228|sp|P20790.1|RAB8A_DICDI RecName: Full=Ras-related protein Rab-8A; AltName: Full=GTP-binding protein SAS1 >gi|167877|gb|AAA33249.1| GTP-binding protein SAS1 [Dictyostelium discoideum] >gi|60469254|gb|EAL67248.1| Rab GTPase [Dictyostelium discoideum AX4])

HSP 1 Score: 194.126 bits (492), Expect = 6.544e-58
Identity = 96/196 (48.98%), Postives = 133/196 (67.86%), Query Frame = 0
Query:  106 IRILLLGDSGVGKTSLMMRYSENEFAPCLLSTAGVDFKVRHLTLEESKRKVKVQIWDTAGQERMHVITRTYYKGSHGIALVYNLTDPDSFRNVNYWMANIQQHAGDKVVKTLIGNKADLTD-RAISYEQGAAMAKEYGFMHFFETSAKSGANVHGAFNALALDIVRRIEEAQNE--SVVAAFGNGGLGNNPKKQCV 298
            I++LL+GDSGVGK+ L++R+SE+ F P  ++T G+DFK+R + LE   +++K+QIWDTAGQER   IT  YY+G+ GI LVY++TD  SF N+  W+ NI+QHA D V K LIGNK D+ + + +   +G ++A EYG + F ETSAK+  NV  AF +LA DI +R+ +  NE   VV    N G  NN KK C 
Sbjct:   16 IKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELE--GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGNIRNWIRNIEQHATDSVNKMLIGNKCDMAEKKVVDSSRGKSLADEYG-IKFLETSAKNSINVEEAFISLAKDIKKRMIDTPNEQPQVVQPGTNLGANNNKKKACC 208          
BLAST of EWM29779.1 vs. NCBI_GenBank
Match: gi|673037838|ref|XP_008872880.1| (hypothetical protein H310_08786 [Aphanomyces invadans] >gi|574471676|gb|ETV98683.1| hypothetical protein H310_08786 [Aphanomyces invadans])

HSP 1 Score: 191.815 bits (486), Expect = 5.526e-57
Identity = 90/175 (51.43%), Postives = 127/175 (72.57%), Query Frame = 0
Query:  106 IRILLLGDSGVGKTSLMMRYSENEFAPCLLSTAGVDFKVRHLTLEESKRKVKVQIWDTAGQERMHVITRTYYKGSHGIALVYNLTDPDSFRNVNYWMANIQQHAGDKVVKTLIGNKADL--TDRAISYEQGAAMAKEYGFMHFFETSAKSGANVHGAFNALALDIVRRIEEAQNE 278
            +++LL+GDSGVGK+ L+MRYS++ F    ++T G+DFKV+  T++   ++VK+QIWDTAGQER   IT  YY+G+ GI LVY++TD  SF+NV  WM  IQQHA   V K L+ NK D+  +DRA+S EQG A+A EYG + FFETSAKS   V  AF ++A+D+ +R+ E+ ++
Sbjct:   12 VKLLLIGDSGVGKSCLLMRYSDDSFTTSFITTIGIDFKVK--TIDVDGKRVKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDDHSFQNVRNWMRQIQQHASPNVNKILVANKCDVDPSDRAVSKEQGEALAAEYG-VQFFETSAKSNLQVDEAFRSIAVDVQKRLAESDSD 183          
BLAST of EWM29779.1 vs. NCBI_GenBank
Match: gi|926791037|ref|XP_013903992.1| (small rab-related GTPase [Monoraphidium neglectum] >gi|761974949|gb|KIZ04973.1| small rab-related GTPase [Monoraphidium neglectum])

HSP 1 Score: 191.815 bits (486), Expect = 6.255e-57
Identity = 88/169 (52.07%), Postives = 124/169 (73.37%), Query Frame = 0
Query:  106 IRILLLGDSGVGKTSLMMRYSENEFAPCLLSTAGVDFKVRHLTLEESKRKVKVQIWDTAGQERMHVITRTYYKGSHGIALVYNLTDPDSFRNVNYWMANIQQHAGDKVVKTLIGNKADLTD--RAISYEQGAAMAKEYGFMHFFETSAKSGANVHGAFNALALDIVRRI 272
            I++LL+GDSGVGK+ L++R+SE  F P  ++T G+DFK++ + L+   + VK+QIWDTAGQER   IT  YY+G+ GI LVY++TD  SF N+  WM NI+QHA D V K L+GNK+D+ D  RA+ Y +G A+A EYG + FFETSAK  +NV  AF ++A D+++R+
Sbjct:   13 IKLLLIGDSGVGKSCLLLRFSEESFTPSFITTIGIDFKIKKIFLDN--KWVKLQIWDTAGQERFRTITSAYYRGAMGILLVYDVTDEASFNNIRNWMRNIEQHASDTVNKILVGNKSDMADERRAVPYARGKALADEYG-IAFFETSAKDNSNVEEAFTSIARDVMQRL 178          
BLAST of EWM29779.1 vs. NCBI_GenBank
Match: gi|302766964|ref|XP_002966902.1| (rab family GTPase [Selaginella moellendorffii] >gi|300164893|gb|EFJ31501.1| rab family GTPase [Selaginella moellendorffii])

HSP 1 Score: 191.815 bits (486), Expect = 8.122e-57
Identity = 88/173 (50.87%), Postives = 128/173 (73.99%), Query Frame = 0
Query:  106 IRILLLGDSGVGKTSLMMRYSENEFAPCLLSTAGVDFKVRHLTLEESKRKVKVQIWDTAGQERMHVITRTYYKGSHGIALVYNLTDPDSFRNVNYWMANIQQHAGDKVVKTLIGNKADLTD--RAISYEQGAAMAKEYGFMHFFETSAKSGANVHGAFNALALDIVRRIEEAQ 276
            I++LL+GDSGVGK+ +++R+S++ F    ++T G+DFK+R  T+E   R+VK+Q+WDTAGQER   IT  YY+G+ GI LVY++TD  SF N+  W+ NI+Q+A + V + L+GNKAD+ +  RA++  QG A+A EYG + FFETSAK+G NV   F A+A DI RR+EE++
Sbjct:   17 IKLLLIGDSGVGKSCVLLRFSDDSFTTSFITTIGIDFKIR--TIELDGRRVKLQVWDTAGQERFRTITTAYYRGAMGIILVYDVTDESSFNNIRNWVKNIEQNASENVSRVLVGNKADMDESKRAVTTAQGQALANEYG-IRFFETSAKTGQNVEETFFAIARDIKRRLEESE 186          
BLAST of EWM29779.1 vs. NCBI_GenBank
Match: gi|302755370|ref|XP_002961109.1| (rab family GTPase [Selaginella moellendorffii] >gi|300172048|gb|EFJ38648.1| rab family GTPase [Selaginella moellendorffii])

HSP 1 Score: 191.43 bits (485), Expect = 1.042e-56
Identity = 88/173 (50.87%), Postives = 128/173 (73.99%), Query Frame = 0
Query:  106 IRILLLGDSGVGKTSLMMRYSENEFAPCLLSTAGVDFKVRHLTLEESKRKVKVQIWDTAGQERMHVITRTYYKGSHGIALVYNLTDPDSFRNVNYWMANIQQHAGDKVVKTLIGNKADLTD--RAISYEQGAAMAKEYGFMHFFETSAKSGANVHGAFNALALDIVRRIEEAQ 276
            I++LL+GDSGVGK+ +++R+S++ F    ++T G+DFK+R  T+E   R+VK+Q+WDTAGQER   IT  YY+G+ GI LVY++TD  SF N+  W+ NI+Q+A + V + L+GNKAD+ +  RA++  QG A+A EYG + FFETSAK+G NV   F A+A DI RR+EE++
Sbjct:   17 IKLLLIGDSGVGKSCVLLRFSDDSFTTSFITTIGIDFKIR--TIELDGRRVKLQVWDTAGQERFRTITTAYYRGAMGIILVYDVTDESSFNNIRNWVKNIEQNASENVSRVLVGNKADMDESKRAVTTAQGQALANEYG-IRFFETSAKTGQNVEETFFAIARDIKRRLEESE 186          
BLAST of EWM29779.1 vs. NCBI_GenBank
Match: gi|145512599|ref|XP_001442216.1| (hypothetical protein [Paramecium tetraurelia strain d4-2] >gi|74831288|emb|CAI39277.1| rab_B67 [Paramecium tetraurelia] >gi|74833789|emb|CAI39358.1| rab_A67 [Paramecium tetraurelia] >gi|124409488|emb|CAK74819.1| unnamed protein product (macronuclear) [Paramecium tetraurelia])

HSP 1 Score: 191.045 bits (484), Expect = 1.239e-56
Identity = 89/160 (55.62%), Postives = 120/160 (75.00%), Query Frame = 0
Query:  106 IRILLLGDSGVGKTSLMMRYSENEFAPCLLSTAGVDFKVRHLTLEESKRKVKVQIWDTAGQERMHVITRTYYKGSHGIALVYNLTDPDSFRNVNYWMANIQQHAGDKVVKTLIGNKADLTDRAISYEQGAAMAKEYGFMHFFETSAKSGANVHGAFNALA 265
            I+ILL+GDSGVGKT++++R+ EN F    LST G+DFK++ + +E   +K+K+QIWDTAGQER   IT+TYYKG+ GI LVY++ D DSF N++ WM  I+QHA + V K LIGNK D+ +R +S E+G A+AK+YG + FFETSAK G  V  AF A+A
Sbjct:   16 IKILLIGDSGVGKTNVLLRFCENNFQQTYLSTIGIDFKIKSIDVE--GKKIKMQIWDTAGQERFKTITQTYYKGAMGIILVYSIDDKDSFTNISSWMNQIKQHASENVCKLLIGNKIDVPNRQVSKEEGEALAKQYG-VPFFETSAKDGTQVAEAFIAMA 172          
BLAST of EWM29779.1 vs. NCBI_GenBank
Match: gi|145522135|ref|XP_001446917.1| (hypothetical protein [Paramecium tetraurelia strain d4-2] >gi|74833715|emb|CAI39332.1| rab_C73 [Paramecium tetraurelia] >gi|124414406|emb|CAK79520.1| unnamed protein product [Paramecium tetraurelia])

HSP 1 Score: 191.045 bits (484), Expect = 1.280e-56
Identity = 86/160 (53.75%), Postives = 120/160 (75.00%), Query Frame = 0
Query:  106 IRILLLGDSGVGKTSLMMRYSENEFAPCLLSTAGVDFKVRHLTLEESKRKVKVQIWDTAGQERMHVITRTYYKGSHGIALVYNLTDPDSFRNVNYWMANIQQHAGDKVVKTLIGNKADLTDRAISYEQGAAMAKEYGFMHFFETSAKSGANVHGAFNALA 265
            I++LL+GDSGVGKT++++R+ EN F P  LST G+DFK++ + +E   +K+K+QIWDTAGQER   IT+TYYKG+ GI LVY++ D +SF+N+  WM+ I+QHA + V K LIGNK D+ +R ++ E+G  +AK YG + FFETSAK G  V  AF A+A
Sbjct:   16 IKVLLIGDSGVGKTNVLLRFCENNFQPTYLSTIGIDFKIKSIDVE--GKKIKMQIWDTAGQERFKTITQTYYKGAMGIILVYSIDDRESFKNIQNWMSQIKQHASENVCKLLIGNKIDVPNRQVTKEEGEELAKSYG-VSFFETSAKEGTQVSDAFYAIA 172          
The following BLAST results are available for this feature:
BLAST of EWM29779.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112359|gb|EWM29779.1|0.000e+0100.00rab family gtpase [Nannochloropsis gaditana][more]
gi|298710848|emb|CBJ26357.1|3.956e-6754.59Rab8C, RAB family GTPase [Ectocarpus siliculosus][more]
gi|145521654|ref|XP_001446682.1|1.685e-5850.29hypothetical protein [Paramecium tetraurelia strai... [more]
gi|66814402|ref|XP_641380.1|6.544e-5848.98Rab GTPase [Dictyostelium discoideum AX4] >gi|1342... [more]
gi|673037838|ref|XP_008872880.1|5.526e-5751.43hypothetical protein H310_08786 [Aphanomyces invad... [more]
gi|926791037|ref|XP_013903992.1|6.255e-5752.07small rab-related GTPase [Monoraphidium neglectum]... [more]
gi|302766964|ref|XP_002966902.1|8.122e-5750.87rab family GTPase [Selaginella moellendorffii] >gi... [more]
gi|302755370|ref|XP_002961109.1|1.042e-5650.87rab family GTPase [Selaginella moellendorffii] >gi... [more]
gi|145512599|ref|XP_001442216.1|1.239e-5655.63hypothetical protein [Paramecium tetraurelia strai... [more]
gi|145522135|ref|XP_001446917.1|1.280e-5653.75hypothetical protein [Paramecium tetraurelia strai... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna942rna942Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications