rna9279, rna9279 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9279
Unique Name	rna9279
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2299
Alignment location	KK037252.1:272086..274522 +

Link to JBrowse

Properties


Property Name	Value
Product	ras-related gtp binding c
Orig transcript id	gnl\|cribi\|Naga_100147g9.4596.mrna
Orig protein id	gnl\|cribi\|Naga_100147g9.4596
Gbkey	mRNA
Note	encoded by transcript variant 2; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037252.1	supercontig	KK037252.1:272086..274522 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100147g9	gene9000	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9279	rna9279-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21415.1	cds9249	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037252.1:272086..274522+
coding sequence from alignment at KK037252.1:272086..274522+

mRNA sequence

>rna9279 ID=rna9279|Name=rna9279|organism=Nannochloropsis gaditana|type=mRNA|length=2299bp
TCTCTCAATACACAGATTGGGCCTCGTTTCCTAAGATAGCTCGCGGCCAG
TGTAAGGCGTAAGGCACACTGCCTCATTGGAGGGAGCTGCGATGGCTCTC
GAGTACACTGACGAGCAGCAAATGGTAATTTGTGAGCCGCAATATTTCCT
GCCATCCTTCCATTGTAATTTGCTCTGTTTTTCCATATAATTGTCATCGT
GAAGCAACAGTTCACTCGTAAACGTCACTCCTTTACCCCCGCCCTACTCC
TTCGGTGTGCATTTGCCACGAATTGTACATGGACGAGTTTCGGCTTATTT
CAGTGTCAAAGCTGGCAATTTGTCTTTAATCCCATTGTCATTACGTGCCC
TTATGCCTGGTTGGAGGGGAAGCTGTCCTGTGTCTGAGTGAGCCCTCTCT
AGCTCCTTGGCTCACTTCCTCTGCCCCACCCCTTTCCCCCCCTCGCACTA
TGATTTTCTCGGTCCCTCAGCTCACCGACTTGACCAAGCCCCGTATCCTT
CTTATGGGCCCCCGTCGCAGTGGAAAAACCAGCATTTTACGCGTCGTTTT
CCAAAAAATGCCTCCCCACGAAACTTTGTTTCTGGAGAGTACCCACGCCG
TCGACATCCGCTTGGCCAACAACAACCCCTTTCTGCAGTTTCAAATCTGG
GATTTCCCCGGAGATTTTTTTTTCTATCGTGTGAGCCGTAACGGAGGGGA
GGGAGGGGGAGGGGGAAGGGAATTGGGCGGGAGCATGACCCAGGAGGGAG
AAGGGGAGGGTCCGAAAGAGGGAGAGCTTCTGGACGAAGTCGGCGTCTTC
GGCGTCCCCGCAGCCTTGGTCTTCGTCTTGGATGCACAGGACGAGCCCTA
CCACGAGGCCTTGACCCGTCTCGTGGACCTGGTGGCCCGGGGCCAGAGCG
TGAACCCGTCGCTACATGTGGTCGTTTTCATCCACAAGGTGGACGGAGAC
CTCTTCCTTTCGGACGAGCACAAGGTCGACTGCCAGCGTGACGTCCAACA
CCGGATCGCCCAGGAGCTCCGCGACGCCTCCCTTGAGCACGTGGAGGTTT
CATGTTTTCTCACCTCGATTTACGACCACTCGATCTTCGAGGCCTTTTCC
AAGATCGTCCAGCGCCTTACTCACCAGCTGCCCGTGATGGAGAATCTGCT
CAACTACCTAATCAGCGCCTGCAAGATGGAGAAATCTTTCCTCTTCGACG
TGGTCAGCCGCCTTTATCTGGCCACGGACTCGAATCCAGTTGACATGCAG
ACGTACGAGATGTGCGTGGATATGATCGACGTGGTCGTTGACGTCTCCTG
TATCTATGGGTATGTCGTGGGGGAAGAGAGGCAGGCTGGGGGGCCACTGG
GCCGAAACATGATTTTCGGGTGACTCCATGGGAAGTGTAGCATGCTTTGT
TCTTTGAGCGACTCGGTAGCGCATATGCACGGCTACAATATTTTAATTCC
GAAATGCTGCTGTGAGGGATGCTGTGATGGGCGACATCATTTTCTCCCCT
TCTCACTTCTTTGAAAATACATTGCTCTCACTTTCTGATGCTATAGTGTC
AAATACGACGCGGAGGGGGAGGCGCAGGGCCCAGTCTACGACTCAGACTC
CTCCTCGACGATCCACCTTAGCAATGGCATGGTCCTCTACCTCCGAGAAG
TGGACGACTATCTCGCCTTTGTCGGACTGATGCGGGCGGAAAATTTTCAA
AAGAAAGGCCTGATTGATTTTAACATTGACTGCCTGAAACGTTCGTTAGG
GCGTCTCTCAAGCGAGGGTGGAAGTGGGGGAGGTGGGAAAGGACATGTTC
ACGAAGAAAAGAGAAACATCATGAGCGGCGCGTCTCGCAAAGGTACTCCC
GATCCCTACCAGAGAATAAGGAATGGGCCAGCGTCGATGAGCGACTTATT
AGAAATAAAGTAAAAACATATCTTCGACACCGCAAATTACTCTGCAACTC
ATGAAATATCGAGTCGGAAGGCTTATGATACAATAATGTTGATTCAGACA
GCTTATTATAACGATGCTATGTATCTTAAGGTTGACGCGGCAACAGTTTG
CCCACCGGATGCGTGACCTGGTTTGCTCGATGTTCTATGACTGTATTGTT
GTAGTACAGCGTCTCACTTCCTGACACTCTCTGCGACATGGACACAGTCA
CTGTACATACAACTTATGTATCTGCGACTGACACTGCTACGACACACGTT
GTCAAGAATGCAAGGATACGTTTCCATGTCGTCGAACGTACGACAACAGA
CATGAAGAAAAGCATTTTCCGCAAAGAAAAGAAATGAAAAAATGTTTGA

protein sequence of rna9279

>rna9279-protein ID=rna9279-protein|Name=rna9279|organism=Nannochloropsis gaditana|type=polypeptide|length=311bp
MALEYTDEQQMLTDLTKPRILLMGPRRSGKTSILRVVFQKMPPHETLFLE
STHAVDIRLANNNPFLQFQIWDFPGDFFFYRVSRNGGEGGGGGRELGGSM
TQEGEGEGPKEGELLDEVGVFGVPAALVFVLDAQDEPYHEALTRLVDLVA
RGQSVNPSLHVVVFIHKVDGDLFLSDEHKVDCQRDVQHRIAQELRDASLE
HVEVSCFLTSIYDHSIFEAFSKIVQRLTHQLPVMENLLNYLISACKMEKS
FLFDVVSRLYLATDSNPVDMQTYEMCVDMIDVVVDVSCIYGYVVGEERQA
GGPLGRNMIFG

mRNA from alignment at KK037252.1:272086..274522+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9279 ID=rna9279|Name=rna9279|organism=Nannochloropsis gaditana|type=mRNA|length=2437bp|location=Sequence derived from alignment at KK037252.1:272086..274522+ (Nannochloropsis gaditana)
TCTCTCAATACACAGATTGGGCCTCGTTTCCTAAGATAGCTCGCGGCCAG
TGTAAGGCGTAAGGCACACTGCCTCATTGGAGGGAGCTGCGATGGCTCTC
GAGTACACTGACGAGCAGCAAATGGTAATTTGTGAGCCGCAATATTTCCT
GCCATCCTTCCATTGTAATTTGCTCTGTTTTTCCATATAATTGTCATCGT
GAAGCAACAGTTCACTCGTAAACGTCACTCCTTTACCCCCGCCCTACTCC
TTCGGTGTGCATTTGCCACGAATTGTACATGGACGAGTTTCGGCTTATTT
CAGTGTCAAAGCTGGCAATTTGTCTTTAATCCCATTGTCATTACGTGCCC
TTATGCCTGGTTGGAGGGGAAGCTGTCCTGTGTCTGAGTGAGCCCTCTCT
AGCTCCTTGGCTcacttcctctgccccacccctttccccccctcgcacTA
TGATTTTCTCGGTCCCTCAGCTCACCGACTTGACCAAGCCCCGTATCCTT
CTTATGGGCCCCCGTCGCAGTGGAAAAACCAGCATTTTACGCGTCGTTTT
CCAAAAAATGCCTCCCCACGAAACTTTGTTTCTGGAGAGTACCCACGCCG
TCGACATCCGCTTGGCCAACAACAACCCCTTTCTGCAGTTTCAAATCTGG
GATTTCCCCGGAGATTTTTTTTTCTATCGTGTGAGCCGtaacggagggga
gggagggggagggggaagggaattGGGCGGGAGCATGacccaggagggag
aaggggagggtccgaaagagggagagcttcTGGACGAAGTCGGCGTCTTC
GGCGTCCCCGCAGCCTTGGTCTTCGTCTTGGATGCACAGGACGAGCCCTA
CCACGAGGCCTTGACCCGTCTCGTGGACCTGGTGGCCCGGGGCCAGAGCG
TGAACCCGTCGCTACATGTGGTCGTTTTCATCCACAAGGTGGACGGagac
ctcttcctttcgGACGAGCACAAGGTCGACTGCCAGCGTGACGTCCAACA
CCGGATCGCCCAGGAGCTCCGCGACGCCTCCCTTGAGCACGTGGAGGTTT
CATGTTTTCTCACCTCGATTTACGACCACTCGATCTTCGAGGCCTTTTCC
AAGATCGTCCAGCGCCTTACTCACCAGCTGCCCGTGATGGAGAATCTGCT
CAACTACCTAATCAGCGCCTGCAAGATGGAGAAatctttcctcttcgacG
TGGTCAGCCGCCTTTATCTGGCCACGGACTCGAATCCAGTTGACATGCAG
ACGTACGAGATGTGCGTGGATATGATCGACGTGGTCGTTGACGTCTCCTG
TATCTATGGGTATGtcgtgggggaagagaggcaggCTGGGGGGCCACTGG
GCCGAAACATGATTTTCGGGTGACTCCATGGGAAGTGTAGCATGCTTTGT
TCTTTGAGCGACTCGGTAGCGCATATGCACGGCTACAATATTTTAATTCC
GAAATGCTGCTGTGAGGGATGCTGTGATGGGCGACAtcattttctcccct
tctcacTTCTTTGAAAATACATTGCTCTCACTTTCTGATGCTATAGTGTC
AAATAcgacgcggagggggaggcgcagggCCCAGTCTACGACTCAGACTC
CTCCTCGACGATCCACCTTAGCAATGGCATGGTCCTCTACCTCCGAGAAG
TGGACGAGTGAGTAACGAGGGCCGGACGGATAGGGATTTGTTGTTGCGAC
CCGCGTGAATATCAACCGAAAATATGCGGTTATAATTTGTATCTGTGCAC
CACCTCGAATGTCAAATCTAACTTTCATTTTGACTATCCAAACAGCTATC
TCGCCTTTGTCGGACTGATGCGGGCGGAAAATTTTCAAAAGAAAGGCCTG
ATTGATTTTAACATTGACTGCCTGAAACGTTCGTTAGGGCGTCTCTCAAG
CGAgggtggaagtgggggaggtgggaaaggacaTGTTCacgaagaaaaga
gaaacaTCATGAGCGGCGCGTCTCGCAAAGGTACTCCCGATCCCTACCAG
AGAATAAGGAATGGGCCAGCGTCGATGAGCGACTTATTAGAAATAAAGTA
AAAACATATCTTCGACACCGCAAATTACTCTGCAACTCATGAAATATCGA
GTCGGAAGGCTTATGATACAATAATGTTGATTCAGACAGCTTATTATAAC
GATGCTATGTATCTTAAGGTTGACGCGGCAACAGTTTGCCCACCGGATGC
GTGACCTGGTTTGCTCGATGTTCTATGACTGTATTGTTGTAGTACAGCGT
CTCACTTCCTGACACTCTCTGCGACATGGACACAGTCACTGTACATACAA
CTTATGTATCTGCGACTGACACTGCTACGACACACGTTGTCAAGAATGCA
AGGATACGTTTCCATGTCGTCGAACGTACGACAACAGACATGAAGAAAAG
CATTTTCcgcaaagaaaagaaatgaaaaaATGTTTGA

Coding sequence (CDS) from alignment at KK037252.1:272086..274522+

>rna9279 ID=rna9279|Name=rna9279|organism=Nannochloropsis gaditana|type=CDS|length=1872bp|location=Sequence derived from alignment at KK037252.1:272086..274522+ (Nannochloropsis gaditana)
ATGGCTCTCGAGTACACTGACGAGCAGCAAATGCTCACCGACTTGACCAA
GCCCCGTATCCTTCTTATGGGCCCCCGTCGCAGTGGAAAAACCAGCATTT
TACGCGTCGTTTTCCAAAAAATGCCTCCCCACGAAACTTTGTTTCTGGAG
AGTACCCACGCCGTCGACATCCGCTTGGCCAACAACAACCCCTTTCTGCA
GTTTCAAATCTGGGATTTCCCCGGAGATTTTTTTTTCTATCGTGTGAGCC
GtaacggaggggagggagggggagggggaagggaattGGGCGGGAGCATG
acccaggagggagaaggggagggtccgaaagagggagagcttcTGGACGA
AGTCGGCGTCTTCGGCGTCCCCGCAGCCTTGGTCTTCGTCTTGGATGCAC
AGGACGAGCCCTACCACGAGGCCTTGACCCGTCTCGTGGACCTGGTGGCC
CGGGGCCAGAGCGTGAACCCGTCGCTACATGTGGTCGTTTTCATCCACAA
GGTGGACGGagacctcttcctttcgGACGAGCACAAGGTCGACTGCCAGC
GTGACGTCCAACACCGGATCGCCCAGGAGCTCCGCGACGCCTCCCTTGAG
CACGTGGAGGTTTCATGTTTTCTCACCTCGATTTACGACCACTCGATCTT
CGAGGCCTTTTCCAAGATCGTCCAGCGCCTTACTCACCAGCTGCCCGTGA
TGGAGAATCTGCTCAACTACCTAATCAGCGCCTGCAAGATGGAGAAatct
ttcctcttcgacGTGGTCAGCCGCCTTTATCTGGCCACGGACTCGAATCC
AGTTGACATGCAGACGTACGAGATGTGCGTGGATATGATCGACGTGGTCG
TTGACGTCTCCTGTATCTATGGGTATGtcgtgggggaagagaggcaggCT
GGGGGGCCACTGGGCCGAAACATGATTTTCGGGTGAATGGCTCTCGAGTA
CACTGACGAGCAGCAAATGCTCACCGACTTGACCAAGCCCCGTATCCTTC
TTATGGGCCCCCGTCGCAGTGGAAAAACCAGCATTTTACGCGTCGTTTTC
CAAAAAATGCCTCCCCACGAAACTTTGTTTCTGGAGAGTACCCACGCCGT
CGACATCCGCTTGGCCAACAACAACCCCTTTCTGCAGTTTCAAATCTGGG
ATTTCCCCGGAGATTTTTTTTTCTATCGTGTGAGCCGtaacggaggggag
ggagggggagggggaagggaattGGGCGGGAGCATGacccaggagggaga
aggggagggtccgaaagagggagagcttcTGGACGAAGTCGGCGTCTTCG
GCGTCCCCGCAGCCTTGGTCTTCGTCTTGGATGCACAGGACGAGCCCTAC
CACGAGGCCTTGACCCGTCTCGTGGACCTGGTGGCCCGGGGCCAGAGCGT
GAACCCGTCGCTACATGTGGTCGTTTTCATCCACAAGGTGGACGGagacc
tcttcctttcgGACGAGCACAAGGTCGACTGCCAGCGTGACGTCCAACAC
CGGATCGCCCAGGAGCTCCGCGACGCCTCCCTTGAGCACGTGGAGGTTTC
ATGTTTTCTCACCTCGATTTACGACCACTCGATCTTCGAGGCCTTTTCCA
AGATCGTCCAGCGCCTTACTCACCAGCTGCCCGTGATGGAGAATCTGCTC
AACTACCTAATCAGCGCCTGCAAGATGGAGAAatctttcctcttcgacGT
GGTCAGCCGCCTTTATCTGGCCACGGACTCGAATCCAGTTGACATGCAGA
CGTACGAGATGTGCGTGGATATGATCGACGTGGTCGTTGACGTCTCCTGT
ATCTATGGGTATGtcgtgggggaagagaggcaggCTGGGGGGCCACTGGG
CCGAAACATGATTTTCGGGTGA

Synonyms

Publications