rna9278, rna9278 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9278
Unique Name	rna9278
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2598
Alignment location	KK037252.1:272086..274522 +

Link to JBrowse

Properties


Property Name	Value
Product	ras-related gtp binding c
Orig transcript id	gnl\|cribi\|Naga_100147g9.4597.mrna
Orig protein id	gnl\|cribi\|Naga_100147g9.4597
Gbkey	mRNA
Note	encoded by transcript variant 3; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037252.1	supercontig	KK037252.1:272086..274522 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100147g9	gene9000	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9278	rna9278-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21416.1	cds9248	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037252.1:272086..274522+
coding sequence from alignment at KK037252.1:272086..274522+

mRNA sequence

>rna9278 ID=rna9278|Name=rna9278|organism=Nannochloropsis gaditana|type=mRNA|length=2598bp
TCGGACGCGGCTTTTCGCTCACTTGACCATTTTTACGGCTCATCTGATTC
TTGGCAGCCGTATTTAACTTGCCTGCCTTTGGCACGTACATCTCTTGGGT
CAAGGTCTGCGCATTTTTATTCCGTGGTGGTTGGATACTAAAGCACTGCA
GACACGAGCCCTAGAGTACAACACGAACGAGCGCTTCTGAGGACCCGACT
GGTGCCCACAAAACAAGAAAACGCGGTGGATCGATGCATCTGCCTTGGAC
TGGAGTACGGCAGATATTTGTGCTGCTTCATTTTGCGTGTCTGTGGAGTA
GCACCTGGTCTTTTTGGGCGAAACCCGTGCTACGACGAAATCTCGACCAT
CGGGCCATAGGAGCTGCTTTTGCTCCTTGCTCTCCGCTTCGACTGCCTTT
TACTCGTATGCAAGCATCAATTTTGTCTACGTCTACTGCCACGCCTGTGT
CTGGCGCCCTCGTAAACTCCACGTCTGCGTCCGGGCAAGACCGCGGCGCC
TACGACGACGCCCTCACGTTGTACAAGACTTTGCGTGCCGATGACGATTC
CTCCATGGCCGACAAGGTGCACACGGCACTCGACGTGGTGGAGCAGGCGC
TACGATTGTATGGCCCATCGCATGTCTTTGCCTCGTACAACGGGGGAAAG
GACGCAGTGGTAGTAATGCACCTCCTCCGCGCGGCCCTCGCCCGCCATGT
CCAAGCCTACGACCTCGACAGCCCCGCCCCTGCAGACACCGCCTCCTCCT
CACCGTCCTCGGGCCCCAGCACTATCCCTCGCCCTCGACTGGTCTATTTC
GAGCAACCGTCCACTGAGTTTCCGGAGGTGAAAGCCCTGGTTTCCCAAAC
TACTCAACGGTACGACCTTGATTTGCGCGTGTACCAGGACGTGCCTTTTG
CTCAAGGGCTCAAGGCCTGCATCGAGGGCGAAGGCGGCGCGCCTCTGGCT
TTTCTATTGGGTACCCGGAAAGGCGACCCGAACTGCAAGGAGCAAGAAAC
CTTCGCGCCAAGCAGCACCTGGATGCCGGCCTTCATGCGCGTCAACCCGA
TCCTGTCCTGGACCTATGGGGAGATATGGCATTTTTTACGCCGCTACAAT
CTGCCCTACTGCTCCCTGTACGACCAAGGGTACACGTCGCTGGGGAAGGT
CGATGACACAAGGCCTAATCCGGCCTTAGCCAAGTCGCGGGCCCGGGACG
ACGCGCAGGAGGGAGGGGAAGGGGGAGGCGCGGGTGGGGTGGGCGGAGGG
GAGTTCTACCCGGCCTACATGCTGACGGATTGGGATCTGGAGAGGGCAGG
CAGGGTGGACAAGAAGAAAGAGGCGACAGCACGAGCCGTGTCCAATAAGG
GGGTGGAAGGCGATGGGTGTAGAGCGGTGGAGGAGGCGGCGGCTGCAGCA
GCAAAAGCGGCCGCGCAGGGGGAAGGGAAGACGCCAGTCATGTCCGCAAA
GGCGTCAAGTAAAGGGTGGAACAAAGCCAGCGGTGGCCAGAGCAAAGAGG
CGGCCGAGGGCGGTGGGTCGAGGGAGAGCGTGAAGACGGCGGGGCTGGTC
ATTATCGGCGACGAGATCCTGAAGGGGAAGACATCGGACACGAACTCGCT
CTATGCGGCGAGGAGATTGCGGGAGAAAGGTGTGGCAGTGCAGCGAATCG
TGGTCCTTTCTGATAACCACGCAGACATCGAGCAGGAAGTTCGACGACAA
GCCTCCTTGTTTGATGTGGTCATCACGAGTGGGGGAGTGGGCCCTACCCA
TGACGACCTAACTATTAAGGCCGTGGCGGCGGCTTTGGGGCAAGGCGTGC
AAGAAAATGAAGAAATGATCCAGCGCCTGCAAGACGCCTATGGGGTAGCC
TCCAGGGATGATCTAAGCGAAGGACAACGAAAAATGGCCCTCCTTCCTGA
GCAAGCCCGCCTACGCGTCCCTCCCCCACCGCCCTCCCCGACCCCTGCAC
CCACTCCCCCCTCCGCGTTCACCACAGAGGCTGCAACCGTGGCAGCAACC
ACAGCCACGGCAGCAGCTGTGGTTGCGGTCGCTTCCAAAACCAAAGTGTG
GCCCATTTTGATGTGCGGAAACGTCTACGTTCTTCCAGGAGTACCGTCCT
TTTTCGAAGCCAAAATGGACACCATCGTCGACCACTTCTTGAACCACTTC
CCCATTTACACCCGGAAAATTGTCCTGGGATTGGACGAAGTGGAAATCGT
TGAGGCGTTGAACCAAGCGGTGGCTCATTTCGAGCCAGAAGGTTGCGTGT
TTGGGAGCTATCCATTCTATGGGGAGACCCGCCCGCGGGTAGTTATCACA
TTAGAAAGCGGGTGCGAGAAGACGGTGGAGGCGGCCACAGCGTTTCTGAT
CGAAAGCATACCTAAAGAGGCGGTTTTACAGGTGGGCAAGGATGACGATT
TGAGAGGCGGAGAGGGGCAGGTCCTCGATGGAGAGATACAAGGAAGGCAC
CCATTGTAAAGGAGTCAGATGGCAGAGGATATGGTAAATCTCAGCTAAAT
TTAAGGGGAGGGAAGAGATAGCTCTCAGAGCCGAGCCGTGGGAGAGAGCG
CAATGTCTTCTCTCCAAAAATAAGTAGTCCGCCTGTTAGGGTTACAGG

protein sequence of rna9278

>rna9278-protein ID=rna9278-protein|Name=rna9278|organism=Nannochloropsis gaditana|type=polypeptide|length=307bp
MIFSVPQLTDLTKPRILLMGPRRSGKTSILRVVFQKMPPHETLFLESTHA
VDIRLANNNPFLQFQIWDFPGDFFFYRVSRNGGEGGGGGRELGGSMTQEG
EGEGPKEGELLDEVGVFGVPAALVFVLDAQDEPYHEALTRLVDLVARGQS
VNPSLHVVVFIHKVDGDLFLSDEHKVDCQRDVQHRIAQELRDASLEHVEV
SCFLTSIYDHSIFEAFSKIVQRLTHQLPVMENLLNYLISACKMEKSFLFD
VVSRLYLATDSNPVDMQTYEMCVDMIDVVVDVSCIYGYVVGEERQAGGPL
GRNMIFG

mRNA from alignment at KK037252.1:272086..274522+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9278 ID=rna9278|Name=rna9278|organism=Nannochloropsis gaditana|type=mRNA|length=2437bp|location=Sequence derived from alignment at KK037252.1:272086..274522+ (Nannochloropsis gaditana)
TCTCTCAATACACAGATTGGGCCTCGTTTCCTAAGATAGCTCGCGGCCAG
TGTAAGGCGTAAGGCACACTGCCTCATTGGAGGGAGCTGCGATGGCTCTC
GAGTACACTGACGAGCAGCAAATGGTAATTTGTGAGCCGCAATATTTCCT
GCCATCCTTCCATTGTAATTTGCTCTGTTTTTCCATATAATTGTCATCGT
GAAGCAACAGTTCACTCGTAAACGTCACTCCTTTACCCCCGCCCTACTCC
TTCGGTGTGCATTTGCCACGAATTGTACATGGACGAGTTTCGGCTTATTT
CAGTGTCAAAGCTGGCAATTTGTCTTTAATCCCATTGTCATTACGTGCCC
TTATGCCTGGTTGGAGGGGAAGCTGTCCTGTGTCTGAGTGAGCCCTCTCT
AGCTCCTTGGCTcacttcctctgccccacccctttccccccctcgcacTA
TGATTTTCTCGGTCCCTCAGCTCACCGACTTGACCAAGCCCCGTATCCTT
CTTATGGGCCCCCGTCGCAGTGGAAAAACCAGCATTTTACGCGTCGTTTT
CCAAAAAATGCCTCCCCACGAAACTTTGTTTCTGGAGAGTACCCACGCCG
TCGACATCCGCTTGGCCAACAACAACCCCTTTCTGCAGTTTCAAATCTGG
GATTTCCCCGGAGATTTTTTTTTCTATCGTGTGAGCCGtaacggagggga
gggagggggagggggaagggaattGGGCGGGAGCATGacccaggagggag
aaggggagggtccgaaagagggagagcttcTGGACGAAGTCGGCGTCTTC
GGCGTCCCCGCAGCCTTGGTCTTCGTCTTGGATGCACAGGACGAGCCCTA
CCACGAGGCCTTGACCCGTCTCGTGGACCTGGTGGCCCGGGGCCAGAGCG
TGAACCCGTCGCTACATGTGGTCGTTTTCATCCACAAGGTGGACGGagac
ctcttcctttcgGACGAGCACAAGGTCGACTGCCAGCGTGACGTCCAACA
CCGGATCGCCCAGGAGCTCCGCGACGCCTCCCTTGAGCACGTGGAGGTTT
CATGTTTTCTCACCTCGATTTACGACCACTCGATCTTCGAGGCCTTTTCC
AAGATCGTCCAGCGCCTTACTCACCAGCTGCCCGTGATGGAGAATCTGCT
CAACTACCTAATCAGCGCCTGCAAGATGGAGAAatctttcctcttcgacG
TGGTCAGCCGCCTTTATCTGGCCACGGACTCGAATCCAGTTGACATGCAG
ACGTACGAGATGTGCGTGGATATGATCGACGTGGTCGTTGACGTCTCCTG
TATCTATGGGTATGtcgtgggggaagagaggcaggCTGGGGGGCCACTGG
GCCGAAACATGATTTTCGGGTGACTCCATGGGAAGTGTAGCATGCTTTGT
TCTTTGAGCGACTCGGTAGCGCATATGCACGGCTACAATATTTTAATTCC
GAAATGCTGCTGTGAGGGATGCTGTGATGGGCGACAtcattttctcccct
tctcacTTCTTTGAAAATACATTGCTCTCACTTTCTGATGCTATAGTGTC
AAATAcgacgcggagggggaggcgcagggCCCAGTCTACGACTCAGACTC
CTCCTCGACGATCCACCTTAGCAATGGCATGGTCCTCTACCTCCGAGAAG
TGGACGAGTGAGTAACGAGGGCCGGACGGATAGGGATTTGTTGTTGCGAC
CCGCGTGAATATCAACCGAAAATATGCGGTTATAATTTGTATCTGTGCAC
CACCTCGAATGTCAAATCTAACTTTCATTTTGACTATCCAAACAGCTATC
TCGCCTTTGTCGGACTGATGCGGGCGGAAAATTTTCAAAAGAAAGGCCTG
ATTGATTTTAACATTGACTGCCTGAAACGTTCGTTAGGGCGTCTCTCAAG
CGAgggtggaagtgggggaggtgggaaaggacaTGTTCacgaagaaaaga
gaaacaTCATGAGCGGCGCGTCTCGCAAAGGTACTCCCGATCCCTACCAG
AGAATAAGGAATGGGCCAGCGTCGATGAGCGACTTATTAGAAATAAAGTA
AAAACATATCTTCGACACCGCAAATTACTCTGCAACTCATGAAATATCGA
GTCGGAAGGCTTATGATACAATAATGTTGATTCAGACAGCTTATTATAAC
GATGCTATGTATCTTAAGGTTGACGCGGCAACAGTTTGCCCACCGGATGC
GTGACCTGGTTTGCTCGATGTTCTATGACTGTATTGTTGTAGTACAGCGT
CTCACTTCCTGACACTCTCTGCGACATGGACACAGTCACTGTACATACAA
CTTATGTATCTGCGACTGACACTGCTACGACACACGTTGTCAAGAATGCA
AGGATACGTTTCCATGTCGTCGAACGTACGACAACAGACATGAAGAAAAG
CATTTTCcgcaaagaaaagaaatgaaaaaATGTTTGA

Coding sequence (CDS) from alignment at KK037252.1:272086..274522+

>rna9278 ID=rna9278|Name=rna9278|organism=Nannochloropsis gaditana|type=CDS|length=924bp|location=Sequence derived from alignment at KK037252.1:272086..274522+ (Nannochloropsis gaditana)
ATGATTTTCTCGGTCCCTCAGCTCACCGACTTGACCAAGCCCCGTATCCT
TCTTATGGGCCCCCGTCGCAGTGGAAAAACCAGCATTTTACGCGTCGTTT
TCCAAAAAATGCCTCCCCACGAAACTTTGTTTCTGGAGAGTACCCACGCC
GTCGACATCCGCTTGGCCAACAACAACCCCTTTCTGCAGTTTCAAATCTG
GGATTTCCCCGGAGATTTTTTTTTCTATCGTGTGAGCCGtaacggagggg
agggagggggagggggaagggaattGGGCGGGAGCATGacccaggaggga
gaaggggagggtccgaaagagggagagcttcTGGACGAAGTCGGCGTCTT
CGGCGTCCCCGCAGCCTTGGTCTTCGTCTTGGATGCACAGGACGAGCCCT
ACCACGAGGCCTTGACCCGTCTCGTGGACCTGGTGGCCCGGGGCCAGAGC
GTGAACCCGTCGCTACATGTGGTCGTTTTCATCCACAAGGTGGACGGaga
cctcttcctttcgGACGAGCACAAGGTCGACTGCCAGCGTGACGTCCAAC
ACCGGATCGCCCAGGAGCTCCGCGACGCCTCCCTTGAGCACGTGGAGGTT
TCATGTTTTCTCACCTCGATTTACGACCACTCGATCTTCGAGGCCTTTTC
CAAGATCGTCCAGCGCCTTACTCACCAGCTGCCCGTGATGGAGAATCTGC
TCAACTACCTAATCAGCGCCTGCAAGATGGAGAAatctttcctcttcgac
GTGGTCAGCCGCCTTTATCTGGCCACGGACTCGAATCCAGTTGACATGCA
GACGTACGAGATGTGCGTGGATATGATCGACGTGGTCGTTGACGTCTCCT
GTATCTATGGGTATGtcgtgggggaagagaggcaggCTGGGGGGCCACTG
GGCCGAAACATGATTTTCGGGTGA

Synonyms

Publications