rna9224, rna9224 (mRNA) Nannochloropsis gaditana

Overview
Namerna9224
Unique Namerna9224
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length3282
Alignment locationKK037252.1:139247..140755 -

Link to JBrowse

Properties
Property NameValue
Productnudix hydrolase
Orig transcript idgnl|cribi|Naga_100019g47.463.mrna
Orig protein idgnl|cribi|Naga_100019g47.463
GbkeymRNA
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037252.1supercontigKK037252.1:139247..140755 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100019g47gene8947Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21441.1cds9194Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9224rna9224-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9224 ID=rna9224|Name=rna9224|organism=Nannochloropsis gaditana|type=mRNA|length=3282bp
AATTAGTGGCTCATTATGGCATAAGACGTTTTAGATGAATGACACTCCAC
GTAGTTGACATTGTGATTGAATTTTTATCTTGACCGTTCTTCACATTGAT
GAAGCAGCATGACACTCATTTGCTACTCTCCCTCTTCAGAACGTCGCTGA
CCCGACTTGTACATCGTTCAGGTGTAATGGAGCCTGGCGGGGCAGGATTA
CTTCGTGAAAGTACAAGACCCTTCCTGATTTTCTCAGGCATCCATATTTC
CGTCGTTTTGATTCTCGTCCTTTATGCCGCCGCTATTCCATCCTCTGGAG
CACTTGTCACCTCCATCCCGCACCAGCCATGCAACAATCATGTGGAATCG
AAGGCGGCCATCACAATCCATACAGTTCGAGGAGACCTTCCAGTGCGAGC
CGGTCAAATCTTTGTTGTGGAGGTATATGCGACACCCAGTGCTGTACTGG
ATGGTGGAAAAATTACCATGGTTGTCAAGGCGATGGGAGTGACTGTCTCT
TCTCGTGCTTTTGGCATTTGTGAAGATATAGACCTTACGTGTCCTGTAGC
ACCAGAACAGAGCGTCAGGGCGCTGTTCCGTTTTCCCGTGCCATGGTACG
CGATCACGATGCGGGCGGATGTAGTGATTACGGCTACGGACACCGAGGGC
TCACCGCTCGCTTGCGTGGAGGCCCCACAGATCCCCGTCGTGCGCAAAGG
CCACATAGAGCCCGTGCTTTCAGGAGCAGACGAATTCCTTGGCGCGCCCA
GCCGTCACTGCGCGGGTTATGATGGAGGCGGAGGTGATTGTATGTGCAGC
GCCTCAAGCCCCTTTCACGATGATGCAAATCGCTGCCATCATCTGTGGGT
AGGTAAGCAGTGGTGCCTGAGGTGGCACGATGCGTTCGCCGACCTTCTCC
TTTCCTTGTAAATAACGTTACATCGCGTGGCTCTTTTCTATCTTCTTCTC
CTGCGAGAGAATGAATGAACACCTACATTTCATGCTTCAAATTGGTGATT
GGTAAATTCAGACGCTTGCAGGAGGCAGGTTCGCATCCAAGATGTCCCCT
AGAGTCTAATCTTCTTTCATGGGTTTATCGCTAAGAGAAAAAATGTATCC
CCCTCCATGCTACTCCGATCATCATGATTTTTTTTACAATTTCATATATA
TATATATATATTACATATTTCATTCTTTATTATTCAGTCACTCGGAGATA
TCACACTACTTGCTACTTTATTCGTGTGAAACGTACGTGTACTGACAAAA
CTTGTAAGTATATCGAAGCGGCACTGGGATTCCTTTGTTCACATTTCCCC
GAATGCCATACGTGTTGTGTTTTTCATCAAGGATGGGAGGCTGCGTGAGC
CTGCCGGGTGGGAGAGTTTGTTGCTACATCTACCAAGTGCTGGATAGAAT
GCCGAAGTCTGTGGAGGCGTCTGTGACGACAGCCAGGCGAGGAGACGGAT
AGAGTGTTGGATGAGCCCGAATTTGAATGTGAAGTCGTGATGGATGACTC
GGAAGCGGCGTGGATCGATCGGTGGCGTTGGTGCCGCAAGTTTCTTTTGC
TAAAGGCCTTGTCCACCAAAGCATGGCCAGAGGCCATCGTGTTTGTAGGC
GCGGGCGGTGTACCCTTCATAAGGGAAACAAACTCCTCATAGCTTATCTT
GCCGTCTCCGTCCGTGTCAACCTCGGCGAAGACTTCCTGCACTTGCTCGA
TTGTCATGTCTGCGCCCACAAGCTCGCCAAAGTTGCTTTGGGATATGTAA
CCCGTGCGATCTGAGTCAATGCGCTGAAAAGCAAGCTGGATATGCTCCTC
ATCCAGGAGCGCAGCATCCATCGTAGCCGCCAAGAACTCGTGCCAAGATA
TTGTGCCCGCGTGCTGATGCGCGACGTCTAACCCCTGCACCAGGGTCTCC
AAGTCACCAGGACTGAGGAGGCCTGACGCTTCAAGTGCTTGTGACAGCTC
CTCTAGGGTGATCTCTCCGTTGCTATCAAGGTCCACCTTCTCGAACTCTC
GGCGCAGATCCTTGATCTGCTCGGACCGTAGGCTGAAAGCTACCACCTCC
ATAGCCACCTTCTTGAGCGTGCTAAATTCGTGGAAGTTGCGGAGGGAACC
CAGAATATCAACATGCAAAGGCTCAGGCGATTGGTCCCACGAATGCAGCC
ATGGGTGTGCCTGTGCCTGCCGCGCCGTCATGCGTCGCGTGTGATCCACA
ACGAGCAGTCTCGATATGAAGTCTTTGGCCTGCGCTGACACCTGATGGAA
AGCAGACGGTGGAAAGCTAAATTTGCCTGCTCGCACGCGTATCAAGGTTT
CATTATCTGTGTCACCGTAGAACGGCGGACGGCCGCTCAAGAGCATGTAC
GCGATGACGCCGATAGACCACATGTCGCACTCCTGCGTGTATGATCCCTC
CAGCACGGAGGGGTCCACGTAGTAAGGCGTGCCCACAGGCCGATGCATGC
GCTGGTCGTCGCTGAAGAGCAATAAGAGGAAATGCGAGTGAGTGAACAAT
TACTTCGACACGACTAGCGTGTGACATCCTAGCGAACATCTTCCTGCGAA
GTCAATGCAAATTCGAGAACTGTTGGTAGTGCCACCAGGAAAGTGGACAC
TGCCTTTTACTGTCTTCACCGCAGGAATATAATGATGGCTTACCGATAGT
GACGCGATAGGCCAAAATCAATGAGCTTGAGCTCGGCATCTGCACCCTCG
TTTTCGAATAAAAAATTCTCGAGTTTTAAGTCTCTGTGAGCAATGTGATG
ATCGTGGCAGTAGCGGATTGCACCCACCATCTTCTTAACGAGCTGAGAGG
CAATCTGTTCCGAATAATGATGACCCTCCTGTCGGTGCAATTTGTCTAGA
AGCTCGCCCCCTGTGCAGAGCTCCATAATGAGAAAAATATGGTCATCCGT
CTCAAAGGTCTCGTAGAGCTGCACGATATTTGGATGATCGAGCTCGCTCA
TAATGCGAACTTCGTTCCGCAGGTCTGCCAAAGAGGCCTTGGATTTCAGC
CGATTCAAGTGCAGCGTCTTCATGGCGTAAGTGTTGCCAGTTGTCAGGTG
CCGCACAACCCGGACCATTCCGCTGATCCCTGTCCCCAAAATTTTGCCTT
TACCAACATCATAGACCTGTAATCGTTGAGTCGTGTTGATTTTACAGAGT
TAACTGGGAAATTTTCGGAAAACGGTACAATTCGAAGAAGTATCTGTCTT
GCTTAGAAAAGCATCATCCCACAGGAGACCCTTATTTGATTTCCCGTCTT
TGACGCATGAAAAAGTCGCAAGAAATTGAATC
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protein sequence of rna9224

>rna9224-protein ID=rna9224-protein|Name=rna9224|organism=Nannochloropsis gaditana|type=polypeptide|length=228bp
MDALIEAFVCASQKVGHAQSQQNVQCCPQASASSLTTPSSFGGSFVRNDA
MAYNRSRATSPVTLCKAAVLIPLFENREDGKIHCLLTVRPSHMRAHAGEV
CFPGGKLDDGEDVVSAALREAWEEVGLAPKVVRVLGTMTPTLSLHLYEVT
PVVAVIPPDFVAQPNPEVMKEREKWTRMTTIVTNYLFPFVLLHLLVSITG
GCRGIFLSAQPHHVPITWPTHMSRFALV
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mRNA from alignment at KK037252.1:139247..140755-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9224 ID=rna9224|Name=rna9224|organism=Nannochloropsis gaditana|type=mRNA|length=1509bp|location=Sequence derived from alignment at KK037252.1:139247..140755- (Nannochloropsis gaditana)
TCAGCCCAAAAGCGAACTCAACAATTGTCTCGCTCCCTGCAGTGTGAATT
GGAAAATATGAGTAAATCAGAAACATTTGCTACAACTCCGGGTGCAAGGA
AGGCCTACGGCTTTATCCATGGACGTGGCCTTGGTATCCTTGTGTCCCTC
CTTCGGGTCGCTGCACCCCGTGACTCACGCACTTAAGACCCTGCGTTCAA
GCCACCGAACTCAATTAACCTGTGCGACCCCGCTTAACAGGTATACAGTC
CTTCTTTGCTTGAGTGTATTTCATTTTGATAATCCCATGGAAATAGTGAT
GGCAATCTGTGCTCTGGACGGGTGAGGTTTGGGTTGATACAGCCTCCCAT
ATGCTTGCTAGCCCTTTCACTACGGTCATGTTTCCTCGCTCTCTCCCTAC
ACGATACGAAGTAGCTCACAGGCCAAACGGGATGGATGCACTGATCGAGG
CCTTTGTTTGTGCCTCCCAGAAGGTTGGCCATGCACAATCACAACAAAAT
GTCCAATGTTGTCCACAAGCGTCAGCTTCCAGTCTTACAACTCCATCGAG
TTTTGGTGGGAGCTTCGTGAGAAATGATGCCATGGCGTATAACAGGAGTC
GTGCTACCAGTCCCGTTACGCTTTGCAAAGCTGCTGTTCTTATACCTCTT
TTCGAAAACCGAGAAGATGGCAAGATACATTGCTTGCTGACCGTTCGACC
GTCGCACATGCGAGCTCATGCAGGAGAGGTGTGTTTCCCTGGCGGGAAAC
TAGACGATGGGGAGGATGTCGTGTCTGCAGCGCTGAGGGAAGCATGGGAG
GAGGTCGGACTTGCACCCAAGGTAGTGCGTGTGCTAGGAACAATGACCCC
GACCCTCTCACTTCATCTCTACGAAGTTACACCCGTGGTAGCTGTTATAC
CTCCTGACTTCGTCGCACAGCCCAACCCTGAGGTGATGAAAGAGCGAGAG
AAATGGACTCGGATGACTACCATAGTGACAAATTACTTGTTCCCCTTTGT
ATTATTACACCTCTTGGTGTCAATCACAGGAGGTTGCCGAGGTATTTTCT
TGTCCGCTCAGCCTCATCATGTCCCCATCACCTGGCCAACACACATGTCA
AGATTTGCACTGGTTTAGCGCCTGGCGGATGCACAAATTTCGGCATGCAG
ATAAATGGGATGTGTGGGGTTTGACAGCTGAGACCCTGCTTCGACTTGTC
ATCTTTTGCTTTCCTGAGCACCCTTTCCCATATGAAACATGTCATCCCGA
CGGAACACACATGGAAACATGGTATCGAAGGGTGCTGGCACTCCCAGAAT
TTCATGAGCAAGCACAGGCAGCTGAAAGTAAACGCGCAAGAAAAGCAGGC
AGCCGCGCTAATAGACAAAGCCGCAGGTCGCTCACAGGTGAAAAGAAGTC
TTAGCTGTGGAGTTGGGGAATGTTCTGTCTTCGAAGAAATTTTATATACA
TCGTCAGGAAAATGTACAAAGTAAGGGGAAAAAGAAAATAATAGAGCATG
CCCCGCAAA
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Coding sequence (CDS) from alignment at KK037252.1:139247..140755-

>rna9224 ID=rna9224|Name=rna9224|organism=Nannochloropsis gaditana|type=CDS|length=687bp|location=Sequence derived from alignment at KK037252.1:139247..140755- (Nannochloropsis gaditana)
ATGGATGCACTGATCGAGGCCTTTGTTTGTGCCTCCCAGAAGGTTGGCCA
TGCACAATCACAACAAAATGTCCAATGTTGTCCACAAGCGTCAGCTTCCA
GTCTTACAACTCCATCGAGTTTTGGTGGGAGCTTCGTGAGAAATGATGCC
ATGGCGTATAACAGGAGTCGTGCTACCAGTCCCGTTACGCTTTGCAAAGC
TGCTGTTCTTATACCTCTTTTCGAAAACCGAGAAGATGGCAAGATACATT
GCTTGCTGACCGTTCGACCGTCGCACATGCGAGCTCATGCAGGAGAGGTG
TGTTTCCCTGGCGGGAAACTAGACGATGGGGAGGATGTCGTGTCTGCAGC
GCTGAGGGAAGCATGGGAGGAGGTCGGACTTGCACCCAAGGTAGTGCGTG
TGCTAGGAACAATGACCCCGACCCTCTCACTTCATCTCTACGAAGTTACA
CCCGTGGTAGCTGTTATACCTCCTGACTTCGTCGCACAGCCCAACCCTGA
GGTGATGAAAGAGCGAGAGAAATGGACTCGGATGACTACCATAGTGACAA
ATTACTTGTTCCCCTTTGTATTATTACACCTCTTGGTGTCAATCACAGGA
GGTTGCCGAGGTATTTTCTTGTCCGCTCAGCCTCATCATGTCCCCATCAC
CTGGCCAACACACATGTCAAGATTTGCACTGGTTTAG
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Synonyms
Publications