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Properties
| Property Name | Value |
|---|
| Product | Winged helix-turn-helix transcription repressor |
| Orig transcript id | gnl|cribi|Naga_100019g66.529.mrna |
| Orig protein id | gnl|cribi|Naga_100019g66.529 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| KK037252.1 | supercontig | KK037252.1:98891..103161 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna9204 ID=rna9204|Name=rna9204|organism=Nannochloropsis gaditana|type=mRNA|length=852bp
ATGCCCGGTACCTCCTATCCTACGACGCAACGCCGGTACTTGAATGATAC
CTATCTCTACGACATATCTTCCACAATTTTAGCTGTGGAGCCCATGCCCC
CGGACACCTCAGCTGGCAGCAACAAAATGCCATATTTTGGCCTTGTGATA
GCCGAAACAGTTTTTCATCCTCAAGGGGGTGGTCAACCATCAGATGTCGG
GCGTGTGGTTGGGGAAAATGGCGTGACCTTTTTCGTCGATAACGTGCGTG
TGGGAGAGAACGCGATTATTTATCACTACGGCACTTTTCAACATGAAATG
AGCGAGAATGAAGATGGCGCGCGCTGTATTCCATTCAGATCTGGCGAGAA
AGTGAAGCTAGAGATTGATGCTGCCCGGCGAAGGCTTCACGCGCGCCTCC
ATTCGGCAGGGCATGCTTTAGACGTGGCTGTGCTCCGGCTGGGCTTGGAA
TTACGGCCCACAAAGGGATATCATTTCGAGGATCATCCATTTGTGGAGTA
TTTAGGAAGGTTGCCTGCTGATAAAGGGTCATCAGAAAGACTTATCGAGG
CTTTGACCTTGAAAATACAAGAACTCATCGAGGAAGACATTGCGACTGAA
CTGTACTCCACTTCCAAGGCCGAAGCGGCGAGTATCCTGTCAGGTGGAGT
GAAGGACGTGGCTCATTTCCCTGAAGGGGCACAAGTGCGTCTGGTCTCTG
TGGGTGGGAATATATGCCCATGTGGAGGGACACATGTAAAGAGCACTAAG
GAGCTAAGAGGAGTGGAGATAACCAGGATCAAAACCAAGAAAAATGTCAC
AAAGATTAGCTATAGGATAAGTAAAGAGGGAAAAGAGAGACAGATATCAT
AA back to topprotein sequence of rna9204 >rna9204-protein ID=rna9204-protein|Name=rna9204|organism=Nannochloropsis gaditana|type=polypeptide|length=695bp
MTRAGRRSRSNSMSSTGSNAQGLVSISDKKMDMPVVLPTSEFNSSNITNV
SCTSSTCSSVATDGNATTFPRKLAEMLQHESHVIAWSMHGLSFFICDNEA
LTYRLLPKYFRHNKLTSFQRQLNLYGFRRITKGTDTGAYFHPQFRRDRPE
LVNHIRRMPGQGATATAKFLPLYYKDVQNSSPTSMPDVSLAERSAFMDVS
ETNAGISVKKANRRSRKGGRAPRRRRDRSESSASNVSQASLTSSAGSECS
FSSASTGISNQDGSDCVDGSAFGAGGLSCGPGEYASEGSMSSFPVGPRHY
QYNALPGGAENLDGGSESAMEGFDFADPAPSLTLTSSYESGLSLLSDEGS
YMSSSSATSKGAVEHAFLPHNHQPLVRLPNAFAASNSSGRQGKGYVLNGQ
KLTSRSPSPSAQHQAARAEVGLPPRHSSGGVQSVGPVRFFMPPLSDPVGA
DAMKMSKSCSARAAGNKMIEGDEDIKVTATLYHGSINGANVTSNNTGESD
KNKLLSGSALPRTFSASSFSQWLNSGSNSQTTAQTSPHPAVLLPAKMDFR
PLSSCGTNLGSETVGSDLVGTTELSSPSTTTSSVSMSPTSRAPSSPPLPL
LKINRCSSMSSELWRGWGSTEDLEALADLDTSIDDIFGSAGPESDMTVQS
AGGWDWSQGQNAEPARPQSYSTSGPSQAAATGVSALGALVGIKAS back to topmRNA from alignment at KK037252.1:98891..103161- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna9204 ID=rna9204|Name=rna9204|organism=Nannochloropsis gaditana|type=mRNA|length=4271bp|location=Sequence derived from alignment at KK037252.1:98891..103161- (Nannochloropsis gaditana)
CAGCGCATTAATACCTTGGAGAGGCCGAAATGCCATATGGTGGTATTTTG
AGAGTGGCTCTGCCATCCTGACAGCGTTTGTTTAAATTGCTTTCCTCGAG
CAATTTCACGCAGCGTAAAGTGCCATGGCTTGGATCAATGTAGTAGAGAG
AGAAATGCTTGTGGGTGGAAAATCGCTCGAAGTGGTGGTGGTCCCTGTCA
TGCAGGTGGCAGATGTCCAGGCAACTTGCCTCGTTGTCTGAGCGACACCG
CGACTTTGGGGTGTGATGTGGCCCTCTCACTCAGTTGCGTCCGATCCTGC
TATGTTAACAAAAAGTGTCCTGGCTGAATACTCGGAACTTTTCTTTTGCG
TGGATGGTGCGGAATAAGGTAGTAGATGTGGGTCTACACGACTCAGAGAA
AAGATCGTGGAAAGCCGCCAACCCTCCTTATCCGGGCAAACATATTTCGT
GGTGCGGCGTTGAGACTATTGCTGAGGAAAATGCGCAATAAGCACGCTGC
CTCATTATGCTACACGCTTTATGACCGTCTTTCTTGTCCTGTAGCATAGG
CATTATCCTCTTCCTGGTAATTGCCTGCGGAAAGTAATTCAACTTGCCCC
CCTTCTCTGTGAGCTAGGTTGAGTTTGACGCCGCAGCACTAAGGACTTTT
AATGGCACCATATGAAATAATCTTGTCTCATTTCTATATCCTCATATATT
GTACTTCACTAGTGATTTCTCGCACCGTGAACCTGCCGGATCTGGTCTCC
AAGGTGTTCTTGTATTTGCCCGACAGAGCCGCTCCAGAGAGCACTGGCGC
GCTTCCTCGCTTTTGAGCAATCCTTATTGACTTCATCAAGCAATATGACG
CGAGCTGGCCGACGGAGCCGCTCCAACTCGATGAGTAGCACGGGCAGTAA
TGCGCAGGGTTTGGTGTCAATTTCTGACAAGAAGATGGACATGCCCGTTG
TGCTGCCTACCTCAGAGTTTAACAGCTCCAACATCACCAATGTGAGCTGT
ACAAGTAGTACTTGTAGCAGTGTTGCCACCGATGGCAATGCCACAACTTT
CCCCCGAAAATTGGCGGAGATGCTACAGCACGAGTCGCACGTGATAGCGT
GGTCAATGCATGGTCTTTCCTTCTTCATCTGCGACAACGAGGCGCTCACC
TATAGGCTCTTGCCTAAATACTTTCGACGTATGTATTAGGCAAATATGGA
AGGGGCTGCAAATATTGAATGGTGATGTGTTTTGATTTGTCTTGATTTAA
GTGTAGCCTGTGACTTTAAAAAAATTGCACCTTGGACCACTCATTATGAA
CCTCTCCTCGTTGTACCAACCCCAGACAATAAATTGACCAGTTTTCAGCG
TCAACTCAATTTGTACGGCTTCAGACGTATAACTAAAGGCACGGACACTG
GCGCGTACTTTCACCCTCAGTTCCGCCGAGACCGCCCGGAGCTGGTGAAC
CACATCCGCCGTATGCCCGGGCAGGGGGCCACCGCCACTGCCAAGTTTCT
GCCCCTCTACTACAAAGACGTCCAGAACTCCTCCCCTACAAGCATGCCTG
ATGTGTCATTGGCTGAGAGGAGTGCCTTTATGGATGTGAGCGAAACAAAT
GCAGGGATATCCGTGAAGAAGGCCAACCGCCGAAGCCGAAAAGGTGGCCG
AGCGCCGCGACGGCGACGCGATCGCTCCGAGTCAAGCGCCTCGAATGTCT
CGCAGGCTTCTTTGACGTCCTCTGCCGGCTCTGAATGCTCCTTTTCCTCT
GCTTCGACCGGAATCTCGAACCAGGATGGCAGCGACTGCGTCGATGGATC
GGCTTTCGGGGCGGGCGGCCTCTCCTGTGGCCCGGGCGAGTATGCTTCGG
AGGGCAGTATGAGTTCCTTCCCCGTCGGTCCTCGCCATTACCAGTACAAT
GCACTTCCAGGAGGCGCTGAGAACTTGGACGGTGGGTCCGAGAGCGCAAT
GGAGGGTTTCGATTTTGCGGACCCTGCGCCATCCCTCACACTGACCTCTT
CCTATGAGAGCGGCCTTTCTCTTCTTTCGGATGAGGGGAGCTACATGAGC
AGCAGCAGCGCGACGAGCAAGGGCGCTGTGGAGCACGCATTTCTCCCCCA
TAACCATCAGCCCTTAGTGCGGCTGCCCAACGCCTTTGCGGCCTCTAACT
CCTCCGGCAGGCAAGGCAAGGGTTATGTCTTGAACGGACAGAAGCTTACC
TCCCGCTCCCCCTCGCCTTCCGCCCAGCACCAGGCCGCACGGGCGGAAGT
CGGCTTACCTCCCCGTCACTCCTCGGGGGGGGTCCAGTCAGTCGGCCCAG
TACGGTTCTTCATGCCTCCTCTCTCTGACCCTGTCGGGGCGGACGCCATG
AAGATGTCCAAGAGCTGCAGCGCCCGTGCAGCCGGCAACAAGATGATCGA
AGGCGACGAGGACATTAAAGTTACTGCCACGCTATACCACGGGTCTATCA
ACGGCGCAAACGTGACCAGCAACAACACTGGTGAAAGTGACAAGAACAAA
CTTCTTTCAGGGAGTGCATTGCCTCGCACATTCTCCGCGTCTTCTTTCTC
CCAGTGGCTTAACAGCGGCAGTAATTCTCAGACAACAGCCCAGACGTCGC
CCCATCCCGCCGTGCTTCTTCCTGCCAAGATGGACTTTCGCCCACTTTCT
TCCTGCGGAACGAATCTGGGATCAGAGACCGTTGGTTCGGACTTGGTAGG
GACCACGGAGCTTTCCTCTCCCTCTACGACTACCTCGTCTGTGTCGATGT
CGCCCACCTCCCGCGCTCCAAGCTCGCCCCCTCTTCCCCTTCTGAAAATA
AACCGCTGCTCCTCCATGAGCTCGGAGCTTTGGCGTGGGTGGGGTTCGAC
AGAGGACTTAGAGGCTCTCGCGGACCTGGACACGTCGATCGACGACATTT
TCGGGTCAGCGGGCCCCGAGAGCGACATGACTGTGCAGTCTGCGGGAGGC
TGGGATTGGAGCCAGGGCCAGAACGCGGAACCTGCTCGTCCACAGAGCTA
CTCCACGAGCGGCCCATCGCAAGCGGCAGCCACTGGAGTCAGTGCCCTTG
GAGCCTTGGTTGGTATAAAGGCATCATAAAGGTGGAAATGTGGATATAAT
ACGAGAATTCAGGCAGCCGTGGAAGAAGTGAGCGACGTAATATACTCCCC
GCCGGCTCAAGCCTAGTTGAAGAGCAACAATACGGCTCTGTATAATTACT
GTCAGTCCCCTGAGCTCGGCAAGGGCCCCATGTAGGAGGTGAAGTGAAAG
ATAAGTCTCAAGAGACGTTATGGGGCTGAAAGTTTTTTTGTGTTTTGCGC
ATTGATGAGATTTTTTTGGTGCTCGAGGTGTGAGAATGTACGTGCGTGTA
CAGAGAAGCCGAGATAGAGCGAACCAGAGATGAAGATGATTTGATTTCAA
TCGGAAGAGGAACGTTGTAAATCGAATAAACACTGAGGAATTGAAGCCTC
AGGAGGAAGGAAGGCACATGAAAAGACGATGCGTGTTAAGGCATGCCATT
TTATGACATACTTAGGAAGAAGTGATGAACGTTGGGCTGAGACGAATTTA
AAAAAAAAAAATGACGAGGAAAAGATGATGAAATATTGAGGAGGTATCGA
TATGCAGTCAAAAATCAGTCAAGTGTGCAGAAGCGGTAGCTAGGTCAAAG
ACGCACGTACAGGTTCAGGCGAGGGCGACACTACGTGAAGTATTGTGAAG
GGAGGGACGAGGTGGAGGATACAGTGGGAATGCTGGACAGCCAGATGGTG
GCGTAGGCGTTGTAAATATTGTCTGCATACGGAGAAAGATGCTGAGAATG
AAGGGCTTGACACGAAATTCGTGGGACAGGGAGGATAGTAGCGCTGCTTC
GCTTTCGTGGAGGTCGGTGCGAGAACTGTGCAAGCAGTGGATGAGCGGTC
CAAACGAAAGTCGTAGCATGAACTCTTTGGGGCTTACTCCACCTATCCAT
TATACAGATACCGTTGATTGGGATCGTATGGTTCTGCACAGTGTGCTATG
GGAAGCTGTCAAACTTCGAATTAGATCTTCAAAGAGACCCAAATGCATTC
CAATATCAAAAGGAGATGAACATGTCAAAGAGAGATGCTGGGAATAACCT
TGAATCTTCTTAATTTTACGCTTTTCTGTGCATCTCTTCTAATTAGGTTC
ATCAGCGACTTACCCTTCTTCATTTCCCCCAGGGTTCAATGTCATAAGCG
GGCACCAACTGCCACCGTTTACATCACGAAGGATTATGATATCTGTCTCT
CTTTTCCCTCTTTACTTATCC back to topCoding sequence (CDS) from alignment at KK037252.1:98891..103161- >rna9204 ID=rna9204|Name=rna9204|organism=Nannochloropsis gaditana|type=CDS|length=4176bp|location=Sequence derived from alignment at KK037252.1:98891..103161- (Nannochloropsis gaditana)
ACAATAAATTGACCAGTTTTCAGCGTCAACTCAATTTGTACGGCTTCAGA
CGTATAACTAAAGGCACGGACACTGGCGCGTACTTTCACCCTCAGTTCCG
CCGAGACCGCCCGGAGCTGGTGAACCACATCCGCCGTATGCCCGGGCAGG
GGGCCACCGCCACTGCCAAGTTTCTGCCCCTCTACTACAAAGACGTCCAG
AACTCCTCCCCTACAAGCATGCCTGATGTGTCATTGGCTGAGAGGAGTGC
CTTTATGGATGTGAGCGAAACAAATGCAGGGATATCCGTGAAGAAGGCCA
ACCGCCGAAGCCGAAAAGGTGGCCGAGCGCCGCGACGGCGACGCGATCGC
TCCGAGTCAAGCGCCTCGAATGTCTCGCAGGCTTCTTTGACGTCCTCTGC
CGGCTCTGAATGCTCCTTTTCCTCTGCTTCGACCGGAATCTCGAACCAGG
ATGGCAGCGACTGCGTCGATGGATCGGCTTTCGGGGCGGGCGGCCTCTCC
TGTGGCCCGGGCGAGTATGCTTCGGAGGGCAGTATGAGTTCCTTCCCCGT
CGGTCCTCGCCATTACCAGTACAATGCACTTCCAGGAGGCGCTGAGAACT
TGGACGGTGGGTCCGAGAGCGCAATGGAGGGTTTCGATTTTGCGGACCCT
GCGCCATCCCTCACACTGACCTCTTCCTATGAGAGCGGCCTTTCTCTTCT
TTCGGATGAGGGGAGCTACATGAGCAGCAGCAGCGCGACGAGCAAGGGCG
CTGTGGAGCACGCATTTCTCCCCCATAACCATCAGCCCTTAGTGCGGCTG
CCCAACGCCTTTGCGGCCTCTAACTCCTCCGGCAGGCAAGGCAAGGGTTA
TGTCTTGAACGGACAGAAGCTTACCTCCCGCTCCCCCTCGCCTTCCGCCC
AGCACCAGGCCGCACGGGCGGAAGTCGGCTTACCTCCCCGTCACTCCTCG
GGGGGGGTCCAGTCAGTCGGCCCAGTACGGTTCTTCATGCCTCCTCTCTC
TGACCCTGTCGGGGCGGACGCCATGAAGATGTCCAAGAGCTGCAGCGCCC
GTGCAGCCGGCAACAAGATGATCGAAGGCGACGAGGACATTAAAGTTACT
GCCACGCTATACCACGGGTCTATCAACGGCGCAAACGTGACCAGCAACAA
CACTGGTGAAAGTGACAAGAACAAACTTCTTTCAGGGAGTGCATTGCCTC
GCACATTCTCCGCGTCTTCTTTCTCCCAGTGGCTTAACAGCGGCAGTAAT
TCTCAGACAACAGCCCAGACGTCGCCCCATCCCGCCGTGCTTCTTCCTGC
CAAGATGGACTTTCGCCCACTTTCTTCCTGCGGAACGAATCTGGGATCAG
AGACCGTTGGTTCGGACTTGGTAGGGACCACGGAGCTTTCCTCTCCCTCT
ACGACTACCTCGTCTGTGTCGATGTCGCCCACCTCCCGCGCTCCAAGCTC
GCCCCCTCTTCCCCTTCTGAAAATAAACCGCTGCTCCTCCATGAGCTCGG
AGCTTTGGCGTGGGTGGGGTTCGACAGAGGACTTAGAGGCTCTCGCGGAC
CTGGACACGTCGATCGACGACATTTTCGGGTCAGCGGGCCCCGAGAGCGA
CATGACTGTGCAGTCTGCGGGAGGCTGGGATTGGAGCCAGGGCCAGAACG
CGGAACCTGCTCGTCCACAGAGCTACTCCACGAGCGGCCCATCGCAAGCG
GCAGCCACTGGAGTCAGTGCCCTTGGAGCCTTGGTTGGTATAAAGGCATC
ATAAATGACGCGAGCTGGCCGACGGAGCCGCTCCAACTCGATGAGTAGCA
CGGGCAGTAATGCGCAGGGTTTGGTGTCAATTTCTGACAAGAAGATGGAC
ATGCCCGTTGTGCTGCCTACCTCAGAGTTTAACAGCTCCAACATCACCAA
TGTGAGCTGTACAAGTAGTACTTGTAGCAGTGTTGCCACCGATGGCAATG
CCACAACTTTCCCCCGAAAATTGGCGGAGATGCTACAGCACGAGTCGCAC
GTGATAGCGTGGTCAATGCATGGTCTTTCCTTCTTCATCTGCGACAACGA
GGCGCTCACCTATAGGCTCTTGCCTAAATACTTTCGACACAATAAATTGA
CCAGTTTTCAGCGTCAACTCAATTTGTACGGCTTCAGACGTATAACTAAA
GGCACGGACACTGGCGCGTACTTTCACCCTCAGTTCCGCCGAGACCGCCC
GGAGCTGGTGAACCACATCCGCCGTATGCCCGGGCAGGGGGCCACCGCCA
CTGCCAAGTTTCTGCCCCTCTACTACAAAGACGTCCAGAACTCCTCCCCT
ACAAGCATGCCTGATGTGTCATTGGCTGAGAGGAGTGCCTTTATGGATGT
GAGCGAAACAAATGCAGGGATATCCGTGAAGAAGGCCAACCGCCGAAGCC
GAAAAGGTGGCCGAGCGCCGCGACGGCGACGCGATCGCTCCGAGTCAAGC
GCCTCGAATGTCTCGCAGGCTTCTTTGACGTCCTCTGCCGGCTCTGAATG
CTCCTTTTCCTCTGCTTCGACCGGAATCTCGAACCAGGATGGCAGCGACT
GCGTCGATGGATCGGCTTTCGGGGCGGGCGGCCTCTCCTGTGGCCCGGGC
GAGTATGCTTCGGAGGGCAGTATGAGTTCCTTCCCCGTCGGTCCTCGCCA
TTACCAGTACAATGCACTTCCAGGAGGCGCTGAGAACTTGGACGGTGGGT
CCGAGAGCGCAATGGAGGGTTTCGATTTTGCGGACCCTGCGCCATCCCTC
ACACTGACCTCTTCCTATGAGAGCGGCCTTTCTCTTCTTTCGGATGAGGG
GAGCTACATGAGCAGCAGCAGCGCGACGAGCAAGGGCGCTGTGGAGCACG
CATTTCTCCCCCATAACCATCAGCCCTTAGTGCGGCTGCCCAACGCCTTT
GCGGCCTCTAACTCCTCCGGCAGGCAAGGCAAGGGTTATGTCTTGAACGG
ACAGAAGCTTACCTCCCGCTCCCCCTCGCCTTCCGCCCAGCACCAGGCCG
CACGGGCGGAAGTCGGCTTACCTCCCCGTCACTCCTCGGGGGGGGTCCAG
TCAGTCGGCCCAGTACGGTTCTTCATGCCTCCTCTCTCTGACCCTGTCGG
GGCGGACGCCATGAAGATGTCCAAGAGCTGCAGCGCCCGTGCAGCCGGCA
ACAAGATGATCGAAGGCGACGAGGACATTAAAGTTACTGCCACGCTATAC
CACGGGTCTATCAACGGCGCAAACGTGACCAGCAACAACACTGGTGAAAG
TGACAAGAACAAACTTCTTTCAGGGAGTGCATTGCCTCGCACATTCTCCG
CGTCTTCTTTCTCCCAGTGGCTTAACAGCGGCAGTAATTCTCAGACAACA
GCCCAGACGTCGCCCCATCCCGCCGTGCTTCTTCCTGCCAAGATGGACTT
TCGCCCACTTTCTTCCTGCGGAACGAATCTGGGATCAGAGACCGTTGGTT
CGGACTTGGTAGGGACCACGGAGCTTTCCTCTCCCTCTACGACTACCTCG
TCTGTGTCGATGTCGCCCACCTCCCGCGCTCCAAGCTCGCCCCCTCTTCC
CCTTCTGAAAATAAACCGCTGCTCCTCCATGAGCTCGGAGCTTTGGCGTG
GGTGGGGTTCGACAGAGGACTTAGAGGCTCTCGCGGACCTGGACACGTCG
ATCGACGACATTTTCGGGTCAGCGGGCCCCGAGAGCGACATGACTGTGCA
GTCTGCGGGAGGCTGGGATTGGAGCCAGGGCCAGAACGCGGAACCTGCTC
GTCCACAGAGCTACTCCACGAGCGGCCCATCGCAAGCGGCAGCCACTGGA
GTCAGTGCCCTTGGAGCCTTGGTTGGTATAAAGGCATCATAAATGACGCG
AGCTGGCCGACGGAGCCGCTCCAACTCGATGAGTAGCACGGGCAGTAATG
CGCAGGGTTTGGTGTCAATTTCTGACAAGAAGATGGACATGCCCGTTGTG
CTGCCTACCTCAGAGTTTAACAGCTCCAACATCACCAATGTGAGCTGTAC
AAGTAGTACTTGTAGCAGTGTTGCCACCGATGGCAATGCCACAACTTTCC
CCCGAAAATTGGCGGAGATGCTACAGCACGAGTCGCACGTGATAGCGTGG
TCAATGCATGGTCTTTCCTTCTTCATCTGCGACAACGAGGCGCTCACCTA
TAGGCTCTTGCCTAAATACTTTCGAC back to top
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