EWM21507.1, cds9174 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21507.1 vs. NCBI_GenBank
Match: gi|585101737|gb|EWM21507.1| (Winged helix-turn-helix transcription repressor [Nannochloropsis gaditana]) HSP 1 Score: 1418.29 bits (3670), Expect = 0.000e+0 Identity = 695/695 (100.00%), Postives = 695/695 (100.00%), Query Frame = 0
Query: 1 MTRAGRRSRSNSMSSTGSNAQGLVSISDKKMDMPVVLPTSEFNSSNITNVSCTSSTCSSVATDGNATTFPRKLAEMLQHESHVIAWSMHGLSFFICDNEALTYRLLPKYFRHNKLTSFQRQLNLYGFRRITKGTDTGAYFHPQFRRDRPELVNHIRRMPGQGATATAKFLPLYYKDVQNSSPTSMPDVSLAERSAFMDVSETNAGISVKKANRRSRKGGRAPRRRRDRSESSASNVSQASLTSSAGSECSFSSASTGISNQDGSDCVDGSAFGAGGLSCGPGEYASEGSMSSFPVGPRHYQYNALPGGAENLDGGSESAMEGFDFADPAPSLTLTSSYESGLSLLSDEGSYMSSSSATSKGAVEHAFLPHNHQPLVRLPNAFAASNSSGRQGKGYVLNGQKLTSRSPSPSAQHQAARAEVGLPPRHSSGGVQSVGPVRFFMPPLSDPVGADAMKMSKSCSARAAGNKMIEGDEDIKVTATLYHGSINGANVTSNNTGESDKNKLLSGSALPRTFSASSFSQWLNSGSNSQTTAQTSPHPAVLLPAKMDFRPLSSCGTNLGSETVGSDLVGTTELSSPSTTTSSVSMSPTSRAPSSPPLPLLKINRCSSMSSELWRGWGSTEDLEALADLDTSIDDIFGSAGPESDMTVQSAGGWDWSQGQNAEPARPQSYSTSGPSQAAATGVSALGALVGIKAS 695
MTRAGRRSRSNSMSSTGSNAQGLVSISDKKMDMPVVLPTSEFNSSNITNVSCTSSTCSSVATDGNATTFPRKLAEMLQHESHVIAWSMHGLSFFICDNEALTYRLLPKYFRHNKLTSFQRQLNLYGFRRITKGTDTGAYFHPQFRRDRPELVNHIRRMPGQGATATAKFLPLYYKDVQNSSPTSMPDVSLAERSAFMDVSETNAGISVKKANRRSRKGGRAPRRRRDRSESSASNVSQASLTSSAGSECSFSSASTGISNQDGSDCVDGSAFGAGGLSCGPGEYASEGSMSSFPVGPRHYQYNALPGGAENLDGGSESAMEGFDFADPAPSLTLTSSYESGLSLLSDEGSYMSSSSATSKGAVEHAFLPHNHQPLVRLPNAFAASNSSGRQGKGYVLNGQKLTSRSPSPSAQHQAARAEVGLPPRHSSGGVQSVGPVRFFMPPLSDPVGADAMKMSKSCSARAAGNKMIEGDEDIKVTATLYHGSINGANVTSNNTGESDKNKLLSGSALPRTFSASSFSQWLNSGSNSQTTAQTSPHPAVLLPAKMDFRPLSSCGTNLGSETVGSDLVGTTELSSPSTTTSSVSMSPTSRAPSSPPLPLLKINRCSSMSSELWRGWGSTEDLEALADLDTSIDDIFGSAGPESDMTVQSAGGWDWSQGQNAEPARPQSYSTSGPSQAAATGVSALGALVGIKAS
Sbjct: 1 MTRAGRRSRSNSMSSTGSNAQGLVSISDKKMDMPVVLPTSEFNSSNITNVSCTSSTCSSVATDGNATTFPRKLAEMLQHESHVIAWSMHGLSFFICDNEALTYRLLPKYFRHNKLTSFQRQLNLYGFRRITKGTDTGAYFHPQFRRDRPELVNHIRRMPGQGATATAKFLPLYYKDVQNSSPTSMPDVSLAERSAFMDVSETNAGISVKKANRRSRKGGRAPRRRRDRSESSASNVSQASLTSSAGSECSFSSASTGISNQDGSDCVDGSAFGAGGLSCGPGEYASEGSMSSFPVGPRHYQYNALPGGAENLDGGSESAMEGFDFADPAPSLTLTSSYESGLSLLSDEGSYMSSSSATSKGAVEHAFLPHNHQPLVRLPNAFAASNSSGRQGKGYVLNGQKLTSRSPSPSAQHQAARAEVGLPPRHSSGGVQSVGPVRFFMPPLSDPVGADAMKMSKSCSARAAGNKMIEGDEDIKVTATLYHGSINGANVTSNNTGESDKNKLLSGSALPRTFSASSFSQWLNSGSNSQTTAQTSPHPAVLLPAKMDFRPLSSCGTNLGSETVGSDLVGTTELSSPSTTTSSVSMSPTSRAPSSPPLPLLKINRCSSMSSELWRGWGSTEDLEALADLDTSIDDIFGSAGPESDMTVQSAGGWDWSQGQNAEPARPQSYSTSGPSQAAATGVSALGALVGIKAS 695
BLAST of EWM21507.1 vs. NCBI_GenBank
Match: gi|224009099|ref|XP_002293508.1| (hypothetical protein THAPSDRAFT_263978, partial [Thalassiosira pseudonana CCMP1335] >gi|220970908|gb|EED89244.1| hypothetical protein THAPSDRAFT_263978, partial [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 115.546 bits (288), Expect = 8.264e-26 Identity = 53/90 (58.89%), Postives = 64/90 (71.11%), Query Frame = 0
Query: 69 FPRKLAEMLQHE-SHVIAWSMHGLSFFICDNEALTYRLLPKYFRHNKLTSFQRQLNLYGFRRITKGTDTGAYFHPQFRRDRPELVNHIRR 157
FPRKL +ML E S V++W G +F + DNE +LP+YFRH KLTSFQRQLNLYGFRRITKG D GAY H F RD+P+L ++R
Sbjct: 39 FPRKLMDMLTKEDSAVVSWLPTGDAFMVRDNERFVGDILPRYFRHTKLTSFQRQLNLYGFRRITKGPDQGAYRHEWFLRDQPDLCIQMKR 128
BLAST of EWM21507.1 vs. NCBI_GenBank
Match: gi|219109838|ref|XP_002176672.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217411207|gb|EEC51135.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 119.013 bits (297), Expect = 1.994e-24 Identity = 54/96 (56.25%), Postives = 68/96 (70.83%), Query Frame = 0
Query: 69 FPRKLAEMLQHE-SHVIAWSMHGLSFFICDNEALTYRLLPKYFRHNKLTSFQRQLNLYGFRRITKGTDTGAYFHPQFRRDRPELVNHIRRMPGQGA 163
FPRKL +ML+ E S V+AW G SF + D++ +LP+YFRH KLTSFQRQLNLYGFRR+TKG D GAY H FRRD P+L ++R +G+
Sbjct: 251 FPRKLMDMLRKEDSSVVAWLPSGDSFSVRDSDRFVADILPRYFRHTKLTSFQRQLNLYGFRRMTKGPDAGAYRHDMFRRDDPDLCLQMKRTKQKGS 346
BLAST of EWM21507.1 vs. NCBI_GenBank
Match: gi|299470402|emb|CBN80163.1| (Putative Heat Shock transcription factor [Ectocarpus siliculosus]) HSP 1 Score: 113.235 bits (282), Expect = 2.157e-22 Identity = 49/90 (54.44%), Postives = 64/90 (71.11%), Query Frame = 0
Query: 69 FPRKLAEMLQHES-HVIAWSMHGLSFFICDNEALTYRLLPKYFRHNKLTSFQRQLNLYGFRRITKGTDTGAYFHPQFRRDRPELVNHIRR 157
F RKLAE+L ES I+W+ +G +F + D E + +L KY+RH+K +SFQRQLNLY FR+I KG D G Y HP FRRDRP+ + H+RR
Sbjct: 14 FARKLAEILTTESTATISWNANGSAFQVHDVERFSEDILTKYYRHSKFSSFQRQLNLYSFRKIVKGADAGGYAHPMFRRDRPDDLYHVRR 103
BLAST of EWM21507.1 vs. NCBI_GenBank
Match: gi|1210525459|dbj|GAX15802.1| (hypothetical protein FisN_3Lh248 [Fistulifera solaris]) HSP 1 Score: 111.309 bits (277), Expect = 3.713e-22 Identity = 58/116 (50.00%), Postives = 72/116 (62.07%), Query Frame = 0
Query: 51 SCTSSTCSSVATDGNATT-FPRKLAEMLQHESH-VIAWSMHGLSFFICDNEALTYRLLPKYFRHNKLTSFQRQLNLYGFRRITKGTDTGAYFHPQFRRDRPELVNHIRRMPGQGAT 164
S T+ST SS A + + FPRKL +ML E V+A+ G F + D E +L +YFRH KLTSFQRQLNLYGFRRITKG D GAY H F RD P+ ++R +GA+
Sbjct: 154 SPTNSTTSSPALGSSGSNPFPRKLMDMLNKEDQSVVAFLPSGDGFVVRDPERFVNDILQRYFRHTKLTSFQRQLNLYGFRRITKGQDAGAYRHELFHRDHPDRCLQMKRTKQKGAS 269
BLAST of EWM21507.1 vs. NCBI_GenBank
Match: gi|224010798|ref|XP_002294356.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220969851|gb|EED88190.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 111.694 bits (278), Expect = 8.264e-22 Identity = 49/98 (50.00%), Postives = 64/98 (65.31%), Query Frame = 0
Query: 69 FPRKLAEMLQHES----HVIAWSMHGLSFFICDNEALTYRLLPKYFRHNKLTSFQRQLNLYGFRRITKGTDTGAYFHPQFRRDRPELVNHIRRMPGQG 162
FP KL +ML ES +I+W HG +F + + T +L+ KYFR +KLTSFQRQLNLYGFRRIT+G D+GAY+H F +DR L + R +G
Sbjct: 443 FPEKLMDMLDKESLLHVDIISWCPHGRAFIVKKPKEFTSKLMEKYFRQSKLTSFQRQLNLYGFRRITQGIDSGAYYHELFLKDRRHLCTRMVRQKVKG 540
BLAST of EWM21507.1 vs. NCBI_GenBank
Match: gi|1210529801|dbj|GAX11334.1| (hypothetical protein FisN_22Lh002 [Fistulifera solaris]) HSP 1 Score: 107.071 bits (266), Expect = 1.205e-21 Identity = 49/109 (44.95%), Postives = 67/109 (61.47%), Query Frame = 0
Query: 64 GNATTFPRKLAEMLQH-----ESHVIAWSMHGLSFFICDNEALTYRLLPKYFRHNKLTSFQRQLNLYGFRRITKGTDTGAYFHPQFRRDRPELVNHIRRMPGQGATATA 167
G FP +L EML+ + H+I+W +HG F I D + LLPK+FR K +SF+RQ+NLYGFR++ GTD GAY+H F R RP+L +RR+ G+ TA
Sbjct: 39 GVTDPFPARLHEMLEDTLFDGQDHIISWQVHGRCFKIHDFDVFARELLPKFFRQTKFSSFKRQMNLYGFRKVLSGTDCGAYYHELFLRGRPDLAMILRRVGGKSTDGTA 147
BLAST of EWM21507.1 vs. NCBI_GenBank
Match: gi|1210520680|dbj|GAX20436.1| (hypothetical protein FisN_22Hh002 [Fistulifera solaris]) HSP 1 Score: 106.686 bits (265), Expect = 1.358e-21 Identity = 49/109 (44.95%), Postives = 67/109 (61.47%), Query Frame = 0
Query: 64 GNATTFPRKLAEMLQH-----ESHVIAWSMHGLSFFICDNEALTYRLLPKYFRHNKLTSFQRQLNLYGFRRITKGTDTGAYFHPQFRRDRPELVNHIRRMPGQGATATA 167
G FP +L EML+ + H+I+W +HG F I D + LLPK+FR K +SF+RQ+NLYGFR++ GTD GAY+H F R RP+L +RR+ G+ TA
Sbjct: 39 GVTDPFPARLHEMLEDTLFDGQDHIISWQVHGRCFKIHDFDVFARELLPKFFRQTKFSSFKRQMNLYGFRKVLSGTDCGAYYHELFLRGRPDLAMILRRVGGKSTDGTA 147
BLAST of EWM21507.1 vs. NCBI_GenBank
Match: gi|1210525078|dbj|GAX16270.1| (hypothetical protein FisN_3Hh248 [Fistulifera solaris]) HSP 1 Score: 109.768 bits (273), Expect = 1.517e-21 Identity = 51/97 (52.58%), Postives = 62/97 (63.92%), Query Frame = 0
Query: 69 FPRKLAEMLQHESH-VIAWSMHGLSFFICDNEALTYRLLPKYFRHNKLTSFQRQLNLYGFRRITKGTDTGAYFHPQFRRDRPELVNHIRRMPGQGAT 164
FPRKL +ML E V+A+ G F + D E +L +YFRH KLTSFQRQLNLYGFRRITKG D GAY H F RD P+ ++R +GA+
Sbjct: 225 FPRKLMDMLNKEDQSVVAFLPSGDGFVVRDPERFVNDILQRYFRHTKLTSFQRQLNLYGFRRITKGQDAGAYRHELFHRDHPDRCLQMKRTKQKGAS 321
BLAST of EWM21507.1 vs. NCBI_GenBank
Match: gi|219125042|ref|XP_002182798.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217405592|gb|EEC45534.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 106.686 bits (265), Expect = 8.609e-21 Identity = 51/106 (48.11%), Postives = 64/106 (60.38%), Query Frame = 0
Query: 62 TDGNATTFPRKLAEMLQHESH-----VIAWSMHGLSFFICDNEALTYRLLPKYFRHNKLTSFQRQLNLYGFRRITKGTDTGAYFHPQFRRDRPELVNHIRRMPGQG 162
T G FP KL EML E+ V++W HG +F + + T +++P YFR KLTSFQRQLNLYGFRRIT+G D GAY+H F R RP L + R +G
Sbjct: 188 TGGVTQPFPEKLHEMLDSETSPAAQAVVSWLPHGRAFVVRKPKEFTSKIMPTYFRQTKLTSFQRQLNLYGFRRITQGADAGAYYHELFLRGRPSLSQRMVRQKVKG 293 The following BLAST results are available for this feature:
BLAST of EWM21507.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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