EWM21507.1, cds9174 (CDS) Nannochloropsis gaditana

Overview
NameEWM21507.1
Unique Namecds9174
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037252.1:101984..102317 -
Alignment locationKK037252.1:100083..101836 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21507.1
ProductWinged helix-turn-helix transcription repressor
Orig transcript idgnl|cribi|Naga_100019g66.529.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037252.1supercontigKK037252.1:101984..102317 -
KK037252.1supercontigKK037252.1:100083..101836 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006950response to stress
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0009628response to abiotic stimulus
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0043565sequence-specific DNA binding
GO:0003700DNA-binding transcription factor activity
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR027725HSF_fam
IPR011991WHTH_DNA-bd_dom
IPR000232HSF_DNA-bd
Homology
BLAST of EWM21507.1 vs. NCBI_GenBank
Match: gi|585101737|gb|EWM21507.1| (Winged helix-turn-helix transcription repressor [Nannochloropsis gaditana])

HSP 1 Score: 1418.29 bits (3670), Expect = 0.000e+0
Identity = 695/695 (100.00%), Postives = 695/695 (100.00%), Query Frame = 0
Query:    1 MTRAGRRSRSNSMSSTGSNAQGLVSISDKKMDMPVVLPTSEFNSSNITNVSCTSSTCSSVATDGNATTFPRKLAEMLQHESHVIAWSMHGLSFFICDNEALTYRLLPKYFRHNKLTSFQRQLNLYGFRRITKGTDTGAYFHPQFRRDRPELVNHIRRMPGQGATATAKFLPLYYKDVQNSSPTSMPDVSLAERSAFMDVSETNAGISVKKANRRSRKGGRAPRRRRDRSESSASNVSQASLTSSAGSECSFSSASTGISNQDGSDCVDGSAFGAGGLSCGPGEYASEGSMSSFPVGPRHYQYNALPGGAENLDGGSESAMEGFDFADPAPSLTLTSSYESGLSLLSDEGSYMSSSSATSKGAVEHAFLPHNHQPLVRLPNAFAASNSSGRQGKGYVLNGQKLTSRSPSPSAQHQAARAEVGLPPRHSSGGVQSVGPVRFFMPPLSDPVGADAMKMSKSCSARAAGNKMIEGDEDIKVTATLYHGSINGANVTSNNTGESDKNKLLSGSALPRTFSASSFSQWLNSGSNSQTTAQTSPHPAVLLPAKMDFRPLSSCGTNLGSETVGSDLVGTTELSSPSTTTSSVSMSPTSRAPSSPPLPLLKINRCSSMSSELWRGWGSTEDLEALADLDTSIDDIFGSAGPESDMTVQSAGGWDWSQGQNAEPARPQSYSTSGPSQAAATGVSALGALVGIKAS 695
            MTRAGRRSRSNSMSSTGSNAQGLVSISDKKMDMPVVLPTSEFNSSNITNVSCTSSTCSSVATDGNATTFPRKLAEMLQHESHVIAWSMHGLSFFICDNEALTYRLLPKYFRHNKLTSFQRQLNLYGFRRITKGTDTGAYFHPQFRRDRPELVNHIRRMPGQGATATAKFLPLYYKDVQNSSPTSMPDVSLAERSAFMDVSETNAGISVKKANRRSRKGGRAPRRRRDRSESSASNVSQASLTSSAGSECSFSSASTGISNQDGSDCVDGSAFGAGGLSCGPGEYASEGSMSSFPVGPRHYQYNALPGGAENLDGGSESAMEGFDFADPAPSLTLTSSYESGLSLLSDEGSYMSSSSATSKGAVEHAFLPHNHQPLVRLPNAFAASNSSGRQGKGYVLNGQKLTSRSPSPSAQHQAARAEVGLPPRHSSGGVQSVGPVRFFMPPLSDPVGADAMKMSKSCSARAAGNKMIEGDEDIKVTATLYHGSINGANVTSNNTGESDKNKLLSGSALPRTFSASSFSQWLNSGSNSQTTAQTSPHPAVLLPAKMDFRPLSSCGTNLGSETVGSDLVGTTELSSPSTTTSSVSMSPTSRAPSSPPLPLLKINRCSSMSSELWRGWGSTEDLEALADLDTSIDDIFGSAGPESDMTVQSAGGWDWSQGQNAEPARPQSYSTSGPSQAAATGVSALGALVGIKAS
Sbjct:    1 MTRAGRRSRSNSMSSTGSNAQGLVSISDKKMDMPVVLPTSEFNSSNITNVSCTSSTCSSVATDGNATTFPRKLAEMLQHESHVIAWSMHGLSFFICDNEALTYRLLPKYFRHNKLTSFQRQLNLYGFRRITKGTDTGAYFHPQFRRDRPELVNHIRRMPGQGATATAKFLPLYYKDVQNSSPTSMPDVSLAERSAFMDVSETNAGISVKKANRRSRKGGRAPRRRRDRSESSASNVSQASLTSSAGSECSFSSASTGISNQDGSDCVDGSAFGAGGLSCGPGEYASEGSMSSFPVGPRHYQYNALPGGAENLDGGSESAMEGFDFADPAPSLTLTSSYESGLSLLSDEGSYMSSSSATSKGAVEHAFLPHNHQPLVRLPNAFAASNSSGRQGKGYVLNGQKLTSRSPSPSAQHQAARAEVGLPPRHSSGGVQSVGPVRFFMPPLSDPVGADAMKMSKSCSARAAGNKMIEGDEDIKVTATLYHGSINGANVTSNNTGESDKNKLLSGSALPRTFSASSFSQWLNSGSNSQTTAQTSPHPAVLLPAKMDFRPLSSCGTNLGSETVGSDLVGTTELSSPSTTTSSVSMSPTSRAPSSPPLPLLKINRCSSMSSELWRGWGSTEDLEALADLDTSIDDIFGSAGPESDMTVQSAGGWDWSQGQNAEPARPQSYSTSGPSQAAATGVSALGALVGIKAS 695          
BLAST of EWM21507.1 vs. NCBI_GenBank
Match: gi|224009099|ref|XP_002293508.1| (hypothetical protein THAPSDRAFT_263978, partial [Thalassiosira pseudonana CCMP1335] >gi|220970908|gb|EED89244.1| hypothetical protein THAPSDRAFT_263978, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 115.546 bits (288), Expect = 8.264e-26
Identity = 53/90 (58.89%), Postives = 64/90 (71.11%), Query Frame = 0
Query:   69 FPRKLAEMLQHE-SHVIAWSMHGLSFFICDNEALTYRLLPKYFRHNKLTSFQRQLNLYGFRRITKGTDTGAYFHPQFRRDRPELVNHIRR 157
            FPRKL +ML  E S V++W   G +F + DNE     +LP+YFRH KLTSFQRQLNLYGFRRITKG D GAY H  F RD+P+L   ++R
Sbjct:   39 FPRKLMDMLTKEDSAVVSWLPTGDAFMVRDNERFVGDILPRYFRHTKLTSFQRQLNLYGFRRITKGPDQGAYRHEWFLRDQPDLCIQMKR 128          
BLAST of EWM21507.1 vs. NCBI_GenBank
Match: gi|219109838|ref|XP_002176672.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217411207|gb|EEC51135.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 119.013 bits (297), Expect = 1.994e-24
Identity = 54/96 (56.25%), Postives = 68/96 (70.83%), Query Frame = 0
Query:   69 FPRKLAEMLQHE-SHVIAWSMHGLSFFICDNEALTYRLLPKYFRHNKLTSFQRQLNLYGFRRITKGTDTGAYFHPQFRRDRPELVNHIRRMPGQGA 163
            FPRKL +ML+ E S V+AW   G SF + D++     +LP+YFRH KLTSFQRQLNLYGFRR+TKG D GAY H  FRRD P+L   ++R   +G+
Sbjct:  251 FPRKLMDMLRKEDSSVVAWLPSGDSFSVRDSDRFVADILPRYFRHTKLTSFQRQLNLYGFRRMTKGPDAGAYRHDMFRRDDPDLCLQMKRTKQKGS 346          
BLAST of EWM21507.1 vs. NCBI_GenBank
Match: gi|299470402|emb|CBN80163.1| (Putative Heat Shock transcription factor [Ectocarpus siliculosus])

HSP 1 Score: 113.235 bits (282), Expect = 2.157e-22
Identity = 49/90 (54.44%), Postives = 64/90 (71.11%), Query Frame = 0
Query:   69 FPRKLAEMLQHES-HVIAWSMHGLSFFICDNEALTYRLLPKYFRHNKLTSFQRQLNLYGFRRITKGTDTGAYFHPQFRRDRPELVNHIRR 157
            F RKLAE+L  ES   I+W+ +G +F + D E  +  +L KY+RH+K +SFQRQLNLY FR+I KG D G Y HP FRRDRP+ + H+RR
Sbjct:   14 FARKLAEILTTESTATISWNANGSAFQVHDVERFSEDILTKYYRHSKFSSFQRQLNLYSFRKIVKGADAGGYAHPMFRRDRPDDLYHVRR 103          
BLAST of EWM21507.1 vs. NCBI_GenBank
Match: gi|1210525459|dbj|GAX15802.1| (hypothetical protein FisN_3Lh248 [Fistulifera solaris])

HSP 1 Score: 111.309 bits (277), Expect = 3.713e-22
Identity = 58/116 (50.00%), Postives = 72/116 (62.07%), Query Frame = 0
Query:   51 SCTSSTCSSVATDGNATT-FPRKLAEMLQHESH-VIAWSMHGLSFFICDNEALTYRLLPKYFRHNKLTSFQRQLNLYGFRRITKGTDTGAYFHPQFRRDRPELVNHIRRMPGQGAT 164
            S T+ST SS A   + +  FPRKL +ML  E   V+A+   G  F + D E     +L +YFRH KLTSFQRQLNLYGFRRITKG D GAY H  F RD P+    ++R   +GA+
Sbjct:  154 SPTNSTTSSPALGSSGSNPFPRKLMDMLNKEDQSVVAFLPSGDGFVVRDPERFVNDILQRYFRHTKLTSFQRQLNLYGFRRITKGQDAGAYRHELFHRDHPDRCLQMKRTKQKGAS 269          
BLAST of EWM21507.1 vs. NCBI_GenBank
Match: gi|224010798|ref|XP_002294356.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220969851|gb|EED88190.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 111.694 bits (278), Expect = 8.264e-22
Identity = 49/98 (50.00%), Postives = 64/98 (65.31%), Query Frame = 0
Query:   69 FPRKLAEMLQHES----HVIAWSMHGLSFFICDNEALTYRLLPKYFRHNKLTSFQRQLNLYGFRRITKGTDTGAYFHPQFRRDRPELVNHIRRMPGQG 162
            FP KL +ML  ES     +I+W  HG +F +   +  T +L+ KYFR +KLTSFQRQLNLYGFRRIT+G D+GAY+H  F +DR  L   + R   +G
Sbjct:  443 FPEKLMDMLDKESLLHVDIISWCPHGRAFIVKKPKEFTSKLMEKYFRQSKLTSFQRQLNLYGFRRITQGIDSGAYYHELFLKDRRHLCTRMVRQKVKG 540          
BLAST of EWM21507.1 vs. NCBI_GenBank
Match: gi|1210529801|dbj|GAX11334.1| (hypothetical protein FisN_22Lh002 [Fistulifera solaris])

HSP 1 Score: 107.071 bits (266), Expect = 1.205e-21
Identity = 49/109 (44.95%), Postives = 67/109 (61.47%), Query Frame = 0
Query:   64 GNATTFPRKLAEMLQH-----ESHVIAWSMHGLSFFICDNEALTYRLLPKYFRHNKLTSFQRQLNLYGFRRITKGTDTGAYFHPQFRRDRPELVNHIRRMPGQGATATA 167
            G    FP +L EML+      + H+I+W +HG  F I D +     LLPK+FR  K +SF+RQ+NLYGFR++  GTD GAY+H  F R RP+L   +RR+ G+    TA
Sbjct:   39 GVTDPFPARLHEMLEDTLFDGQDHIISWQVHGRCFKIHDFDVFARELLPKFFRQTKFSSFKRQMNLYGFRKVLSGTDCGAYYHELFLRGRPDLAMILRRVGGKSTDGTA 147          
BLAST of EWM21507.1 vs. NCBI_GenBank
Match: gi|1210520680|dbj|GAX20436.1| (hypothetical protein FisN_22Hh002 [Fistulifera solaris])

HSP 1 Score: 106.686 bits (265), Expect = 1.358e-21
Identity = 49/109 (44.95%), Postives = 67/109 (61.47%), Query Frame = 0
Query:   64 GNATTFPRKLAEMLQH-----ESHVIAWSMHGLSFFICDNEALTYRLLPKYFRHNKLTSFQRQLNLYGFRRITKGTDTGAYFHPQFRRDRPELVNHIRRMPGQGATATA 167
            G    FP +L EML+      + H+I+W +HG  F I D +     LLPK+FR  K +SF+RQ+NLYGFR++  GTD GAY+H  F R RP+L   +RR+ G+    TA
Sbjct:   39 GVTDPFPARLHEMLEDTLFDGQDHIISWQVHGRCFKIHDFDVFARELLPKFFRQTKFSSFKRQMNLYGFRKVLSGTDCGAYYHELFLRGRPDLAMILRRVGGKSTDGTA 147          
BLAST of EWM21507.1 vs. NCBI_GenBank
Match: gi|1210525078|dbj|GAX16270.1| (hypothetical protein FisN_3Hh248 [Fistulifera solaris])

HSP 1 Score: 109.768 bits (273), Expect = 1.517e-21
Identity = 51/97 (52.58%), Postives = 62/97 (63.92%), Query Frame = 0
Query:   69 FPRKLAEMLQHESH-VIAWSMHGLSFFICDNEALTYRLLPKYFRHNKLTSFQRQLNLYGFRRITKGTDTGAYFHPQFRRDRPELVNHIRRMPGQGAT 164
            FPRKL +ML  E   V+A+   G  F + D E     +L +YFRH KLTSFQRQLNLYGFRRITKG D GAY H  F RD P+    ++R   +GA+
Sbjct:  225 FPRKLMDMLNKEDQSVVAFLPSGDGFVVRDPERFVNDILQRYFRHTKLTSFQRQLNLYGFRRITKGQDAGAYRHELFHRDHPDRCLQMKRTKQKGAS 321          
BLAST of EWM21507.1 vs. NCBI_GenBank
Match: gi|219125042|ref|XP_002182798.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217405592|gb|EEC45534.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 106.686 bits (265), Expect = 8.609e-21
Identity = 51/106 (48.11%), Postives = 64/106 (60.38%), Query Frame = 0
Query:   62 TDGNATTFPRKLAEMLQHESH-----VIAWSMHGLSFFICDNEALTYRLLPKYFRHNKLTSFQRQLNLYGFRRITKGTDTGAYFHPQFRRDRPELVNHIRRMPGQG 162
            T G    FP KL EML  E+      V++W  HG +F +   +  T +++P YFR  KLTSFQRQLNLYGFRRIT+G D GAY+H  F R RP L   + R   +G
Sbjct:  188 TGGVTQPFPEKLHEMLDSETSPAAQAVVSWLPHGRAFVVRKPKEFTSKIMPTYFRQTKLTSFQRQLNLYGFRRITQGADAGAYYHELFLRGRPSLSQRMVRQKVKG 293          
The following BLAST results are available for this feature:
BLAST of EWM21507.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101737|gb|EWM21507.1|0.000e+0100.00Winged helix-turn-helix transcription repressor [N... [more]
gi|224009099|ref|XP_002293508.1|8.264e-2658.89hypothetical protein THAPSDRAFT_263978, partial [T... [more]
gi|219109838|ref|XP_002176672.1|1.994e-2456.25predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|299470402|emb|CBN80163.1|2.157e-2254.44Putative Heat Shock transcription factor [Ectocarp... [more]
gi|1210525459|dbj|GAX15802.1|3.713e-2250.00hypothetical protein FisN_3Lh248 [Fistulifera sola... [more]
gi|224010798|ref|XP_002294356.1|8.264e-2250.00predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|1210529801|dbj|GAX11334.1|1.205e-2144.95hypothetical protein FisN_22Lh002 [Fistulifera sol... [more]
gi|1210520680|dbj|GAX20436.1|1.358e-2144.95hypothetical protein FisN_22Hh002 [Fistulifera sol... [more]
gi|1210525078|dbj|GAX16270.1|1.517e-2152.58hypothetical protein FisN_3Hh248 [Fistulifera sola... [more]
gi|219125042|ref|XP_002182798.1|8.609e-2148.11predicted protein [Phaeodactylum tricornutum CCAP ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9204rna9204Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications